Wall clock time and date at job start Tue Mar 31 2020 22:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42907 * 113.99770 * 2 1 4 4 H 1.08997 * 109.46823 * 330.00104 * 3 2 1 5 5 C 1.52997 * 109.46999 * 89.99924 * 3 2 1 6 6 C 1.50699 * 109.46975 * 209.99743 * 3 2 1 7 7 O 1.21277 * 119.99904 * 341.87871 * 6 3 2 8 8 N 1.34774 * 119.99836 * 161.87531 * 6 3 2 9 9 C 1.45519 * 119.38033 * 4.28757 * 8 6 3 10 10 C 1.52075 * 110.65110 * 131.23908 * 9 8 6 11 11 C 1.51206 * 114.39172 * 47.78100 * 10 9 8 12 12 H 1.09006 * 109.65059 * 86.80481 * 11 10 9 13 13 C 1.55038 * 107.28181 * 205.43477 * 11 10 9 14 14 C 1.55037 * 103.30726 * 139.28212 * 13 11 10 15 15 N 1.49322 * 102.75829 * 324.39455 * 14 13 11 16 16 C 1.46903 * 110.99659 * 161.50829 * 15 14 13 17 17 C 1.50694 * 109.47259 * 75.46440 * 16 15 14 18 18 O 1.21289 * 120.00523 * 359.97438 * 17 16 15 19 19 N 1.34782 * 119.99525 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99518 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00255 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99706 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00080 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00188 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46754 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47201 * 119.99746 * 24 22 20 27 27 H 1.48499 * 109.46994 * 240.00371 * 24 22 20 28 28 C 1.47169 * 103.50224 * 42.36712 * 15 14 13 29 29 H 1.08996 * 103.92739 * 77.21320 * 28 15 14 30 30 C 1.45228 * 119.37988 * 184.56048 * 8 6 3 31 31 H 1.09007 * 109.47355 * 60.00169 * 1 2 3 32 32 H 1.09001 * 109.47184 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47294 * 300.00262 * 1 2 3 34 34 H 1.09006 * 109.47217 * 54.81556 * 5 3 2 35 35 H 1.08993 * 109.47168 * 174.81778 * 5 3 2 36 36 H 1.09001 * 109.47157 * 294.81995 * 5 3 2 37 37 H 1.09002 * 109.09479 * 252.81140 * 9 8 6 38 38 H 1.08999 * 109.09625 * 11.83026 * 9 8 6 39 39 H 1.09004 * 109.59135 * 285.83892 * 10 9 8 40 40 H 1.08994 * 107.73007 * 168.36136 * 10 9 8 41 41 H 1.09000 * 110.25423 * 21.00238 * 13 11 10 42 42 H 1.08998 * 111.16938 * 257.99341 * 13 11 10 43 43 H 1.09002 * 110.74902 * 206.07961 * 14 13 11 44 44 H 1.08993 * 110.75744 * 82.71169 * 14 13 11 45 45 H 1.08996 * 109.46913 * 195.46821 * 16 15 14 46 46 H 1.09003 * 109.46869 * 315.46477 * 16 15 14 47 47 H 0.96999 * 120.00349 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99963 * 179.97438 * 23 22 20 49 49 H 1.08990 * 108.51697 * 337.62736 * 30 8 6 50 50 H 1.09001 * 108.51947 * 95.13823 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3386 1.2640 -0.7104 7 8 3.9028 0.2039 -0.8796 8 7 3.8996 2.4049 -1.1576 9 6 3.2582 3.6781 -0.8656 10 6 4.2679 4.6736 -0.3158 11 6 5.5514 4.7643 -1.1099 12 1 5.4315 5.4846 -1.9193 13 6 6.6575 5.2589 -0.1426 14 6 7.8861 4.3990 -0.5360 15 7 7.2703 3.0842 -0.8848 16 6 8.1897 2.2696 -1.6906 17 6 9.2679 1.7029 -0.8033 18 8 9.2706 1.9532 0.3835 19 7 10.2293 0.9177 -1.3286 20 6 11.2105 0.4026 -0.5214 21 1 11.2133 0.6262 0.5352 22 6 12.2013 -0.4073 -1.0628 23 7 12.1976 -0.6798 -2.3483 24 14 13.5379 -1.1099 0.0370 25 1 13.3179 -0.6572 1.4341 26 1 13.4936 -2.5932 -0.0161 27 1 14.8648 -0.6370 -0.4329 28 6 6.0780 3.4585 -1.6621 29 1 6.4757 3.7213 -2.6423 30 6 5.1296 2.3402 -1.9270 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 2.8071 1.0304 1.9825 35 1 2.7441 2.7258 1.4439 36 1 1.2493 1.8899 1.9288 37 1 2.8023 4.0650 -1.7769 38 1 2.4809 3.5225 -0.1175 39 1 4.5174 4.4110 0.7123 40 1 3.7962 5.6562 -0.3108 41 1 6.3686 5.0669 0.8907 42 1 6.8659 6.3183 -0.2917 43 1 8.5696 4.2940 0.3066 44 1 8.3971 4.8271 -1.3983 45 1 7.6379 1.4541 -2.1581 46 1 8.6438 2.8907 -2.4627 47 1 10.2274 0.7178 -2.2777 48 1 12.8895 -1.2449 -2.7263 49 1 5.6311 1.3996 -1.6994 50 1 4.8756 2.3455 -2.9870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222348353.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:38 Heat of formation + Delta-G solvation = -88.102041 kcal Electronic energy + Delta-G solvation = -31040.425827 eV Core-core repulsion = 26875.528745 eV Total energy + Delta-G solvation = -4164.897082 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.97608 -39.53822 -38.00524 -37.56136 -35.98594 -33.90841 -33.41807 -32.31588 -31.16149 -30.11437 -29.97968 -27.11439 -26.64874 -25.48558 -24.37399 -23.41846 -22.97572 -21.29287 -20.33450 -19.17902 -18.27223 -17.82801 -17.75415 -17.02757 -16.21184 -15.92650 -15.80448 -15.47047 -15.26468 -15.08033 -14.79375 -14.48744 -14.17904 -14.03806 -13.79483 -13.72750 -13.38346 -13.17215 -13.07641 -12.68632 -12.56229 -12.41704 -12.26451 -12.03058 -11.84944 -11.61352 -11.44469 -11.42355 -11.25976 -11.11347 -10.85368 -10.78700 -10.64414 -10.51332 -10.28661 -10.19935 -10.15386 -9.55173 -9.43127 -8.72699 -8.42554 -7.94944 -7.87129 -6.34437 -3.74783 2.52968 2.61551 3.21662 3.31569 3.39051 3.63682 3.87529 3.99744 4.22529 4.27929 4.39312 4.43845 4.53432 4.58596 4.72039 4.85268 4.97324 5.00779 5.04615 5.07807 5.13366 5.20488 5.24709 5.31543 5.34467 5.35030 5.38263 5.42378 5.50023 5.61297 5.65485 5.70013 5.82513 5.84757 5.88387 5.89505 6.03134 6.12369 6.22156 6.34649 6.37885 6.46471 6.76600 7.13798 7.22653 7.29529 7.62404 8.13815 8.14050 8.69958 9.26004 9.62648 10.14935 10.83697 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.002891 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.814704 B = 9682.877989 C =11069.115033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.073 3.927 4 H 0.082 0.918 5 C -0.175 4.175 6 C 0.512 3.488 7 O -0.508 6.508 8 N -0.597 5.597 9 C 0.103 3.897 10 C -0.123 4.123 11 C -0.078 4.078 12 H 0.076 0.924 13 C -0.119 4.119 14 C 0.037 3.963 15 N -0.479 5.479 16 C 0.033 3.967 17 C 0.449 3.551 18 O -0.575 6.575 19 N -0.567 5.567 20 C -0.295 4.295 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.064 3.936 29 H 0.032 0.968 30 C 0.129 3.871 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.041 0.959 45 H 0.088 0.912 46 H 0.051 0.949 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.101 0.899 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.918 13.216 -0.379 27.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.012 3.988 4 H 0.100 0.900 5 C -0.232 4.232 6 C 0.298 3.702 7 O -0.381 6.381 8 N -0.333 5.333 9 C -0.021 4.021 10 C -0.161 4.161 11 C -0.097 4.097 12 H 0.095 0.905 13 C -0.157 4.157 14 C -0.091 4.091 15 N -0.203 5.203 16 C -0.098 4.098 17 C 0.234 3.766 18 O -0.458 6.458 19 N -0.204 5.204 20 C -0.425 4.425 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.209 1.209 28 C -0.046 4.046 29 H 0.050 0.950 30 C 0.007 3.993 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.116 0.884 44 H 0.059 0.941 45 H 0.106 0.894 46 H 0.069 0.931 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.119 0.881 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.473 12.179 0.679 26.453 hybrid contribution 0.790 0.223 -1.018 1.308 sum -22.683 12.402 -0.340 25.854 Atomic orbital electron populations 1.22884 0.80740 1.03296 0.99893 1.88091 1.19517 1.25172 1.94935 1.21945 0.93364 0.86623 0.96916 0.90009 1.22315 1.03284 1.02751 0.94885 1.20387 0.86929 0.83948 0.78929 1.90758 1.62801 1.29514 1.55054 1.47077 1.25207 1.05953 1.55021 1.21348 0.95619 0.84242 1.00851 1.21361 0.95089 0.99024 1.00641 1.20836 0.95341 0.95330 0.98190 0.90534 1.22846 0.94525 0.98702 0.99645 1.23402 0.96480 0.87987 1.01198 1.64649 1.03558 1.14434 1.37694 1.22113 0.94770 0.98106 0.94838 1.19622 0.84097 0.84049 0.88827 1.90506 1.76500 1.62881 1.15954 1.41859 1.23802 1.43669 1.11091 1.19733 1.02834 1.26102 0.93799 0.87932 1.25247 0.99033 0.97534 0.96242 1.69623 1.35355 1.38339 1.11176 0.85812 0.80009 0.78521 0.80075 1.19249 1.20758 1.20854 1.20907 0.93174 0.93931 0.96597 0.95030 1.20244 0.84285 1.00936 0.93874 0.93940 0.89109 0.93831 0.90452 0.90506 0.91237 0.91570 0.89646 0.90810 0.90838 0.90499 0.91277 0.88405 0.94124 0.89398 0.93116 0.77564 0.92013 0.88107 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.31 16 2 O -0.36 -4.47 9.95 -54.46 -0.54 -5.01 16 3 C 0.07 0.76 2.27 -27.89 -0.06 0.70 16 4 H 0.08 0.58 6.81 -51.93 -0.35 0.23 16 5 C -0.17 -1.54 9.08 37.16 0.34 -1.20 16 6 C 0.51 7.38 6.93 -10.99 -0.08 7.30 16 7 O -0.51 -10.02 15.94 -13.67 -0.22 -10.24 16 8 N -0.60 -7.20 3.05 -178.40 -0.55 -7.74 16 9 C 0.10 0.79 5.68 -5.04 -0.03 0.76 16 10 C -0.12 -0.98 5.43 -28.11 -0.15 -1.13 16 11 C -0.08 -0.78 3.20 -91.33 -0.29 -1.07 16 12 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 13 C -0.12 -1.34 6.53 -24.58 -0.16 -1.50 16 14 C 0.04 0.57 6.00 -1.40 -0.01 0.56 16 15 N -0.48 -8.23 4.77 -227.89 -1.09 -9.31 16 16 C 0.03 0.63 5.02 -4.98 -0.02 0.60 16 17 C 0.45 11.09 7.64 -10.99 -0.08 11.01 16 18 O -0.58 -16.14 14.87 5.55 0.08 -16.06 16 19 N -0.57 -14.98 5.29 -10.96 -0.06 -15.04 16 20 C -0.30 -8.51 9.68 -14.93 -0.14 -8.66 16 21 H 0.10 3.11 7.16 -52.49 -0.38 2.73 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -25.37 13.05 55.50 0.72 -24.65 16 24 Si 0.93 21.76 29.55 -169.99 -5.02 16.73 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 C 0.06 0.83 2.13 -70.41 -0.15 0.68 16 29 H 0.03 0.39 7.58 -51.93 -0.39 0.00 16 30 C 0.13 1.76 5.82 -6.68 -0.04 1.72 16 31 H 0.04 0.25 8.09 -51.92 -0.42 -0.17 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.24 7.99 -51.93 -0.42 -0.17 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.59 6.28 -51.93 -0.33 0.26 16 36 H 0.07 0.44 7.99 -51.93 -0.42 0.03 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.50 4.20 -51.93 -0.22 0.28 16 39 H 0.07 0.68 7.14 -51.93 -0.37 0.31 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.90 7.13 -51.93 -0.37 0.53 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 1.80 7.28 -51.93 -0.38 1.43 16 44 H 0.04 0.59 7.82 -51.93 -0.41 0.18 16 45 H 0.09 1.58 6.90 -51.93 -0.36 1.22 16 46 H 0.05 0.86 7.80 -51.93 -0.40 0.45 16 47 H 0.39 9.91 7.90 -40.82 -0.32 9.59 16 48 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 49 H 0.10 1.75 5.80 -51.93 -0.30 1.45 16 50 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -36.88 388.68 -8.62 -45.51 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -7.92 Total: 8.41 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 0.11 Total: 11.56 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.97 Total: -56.75 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.68 Total: -31.31 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.88 -8.62 -45.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222348353.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.596 kcal (2) G-P(sol) polarization free energy of solvation -36.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds