Wall clock time and date at job start Tue Mar 31 2020 22:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42907 * 113.99770 * 2 1 4 4 H 1.08997 * 109.46823 * 330.00104 * 3 2 1 5 5 C 1.52997 * 109.46999 * 89.99924 * 3 2 1 6 6 C 1.50699 * 109.46975 * 209.99743 * 3 2 1 7 7 O 1.21277 * 119.99904 * 341.87871 * 6 3 2 8 8 N 1.34774 * 119.99836 * 161.87531 * 6 3 2 9 9 C 1.45519 * 119.38033 * 4.28757 * 8 6 3 10 10 C 1.52075 * 110.65110 * 131.23908 * 9 8 6 11 11 C 1.51206 * 114.39172 * 47.78100 * 10 9 8 12 12 H 1.09006 * 109.65059 * 86.80481 * 11 10 9 13 13 C 1.55038 * 107.28181 * 205.43477 * 11 10 9 14 14 C 1.55037 * 103.30726 * 139.28212 * 13 11 10 15 15 N 1.49322 * 102.75829 * 324.39455 * 14 13 11 16 16 C 1.46903 * 110.99659 * 161.50829 * 15 14 13 17 17 C 1.50694 * 109.47259 * 75.46440 * 16 15 14 18 18 O 1.21289 * 120.00523 * 359.97438 * 17 16 15 19 19 N 1.34782 * 119.99525 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99518 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00255 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99706 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00080 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00188 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46754 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47201 * 119.99746 * 24 22 20 27 27 H 1.48499 * 109.46994 * 240.00371 * 24 22 20 28 28 C 1.47169 * 103.50224 * 42.36712 * 15 14 13 29 29 H 1.08996 * 103.92739 * 77.21320 * 28 15 14 30 30 C 1.45228 * 119.37988 * 184.56048 * 8 6 3 31 31 H 1.09007 * 109.47355 * 60.00169 * 1 2 3 32 32 H 1.09001 * 109.47184 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47294 * 300.00262 * 1 2 3 34 34 H 1.09006 * 109.47217 * 54.81556 * 5 3 2 35 35 H 1.08993 * 109.47168 * 174.81778 * 5 3 2 36 36 H 1.09001 * 109.47157 * 294.81995 * 5 3 2 37 37 H 1.09002 * 109.09479 * 252.81140 * 9 8 6 38 38 H 1.08999 * 109.09625 * 11.83026 * 9 8 6 39 39 H 1.09004 * 109.59135 * 285.83892 * 10 9 8 40 40 H 1.08994 * 107.73007 * 168.36136 * 10 9 8 41 41 H 1.09000 * 110.25423 * 21.00238 * 13 11 10 42 42 H 1.08998 * 111.16938 * 257.99341 * 13 11 10 43 43 H 1.09002 * 110.74902 * 206.07961 * 14 13 11 44 44 H 1.08993 * 110.75744 * 82.71169 * 14 13 11 45 45 H 1.08996 * 109.46913 * 195.46821 * 16 15 14 46 46 H 1.09003 * 109.46869 * 315.46477 * 16 15 14 47 47 H 0.96999 * 120.00349 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99963 * 179.97438 * 23 22 20 49 49 H 1.08990 * 108.51697 * 337.62736 * 30 8 6 50 50 H 1.09001 * 108.51947 * 95.13823 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3386 1.2640 -0.7104 7 8 3.9028 0.2039 -0.8796 8 7 3.8996 2.4049 -1.1576 9 6 3.2582 3.6781 -0.8656 10 6 4.2679 4.6736 -0.3158 11 6 5.5514 4.7643 -1.1099 12 1 5.4315 5.4846 -1.9193 13 6 6.6575 5.2589 -0.1426 14 6 7.8861 4.3990 -0.5360 15 7 7.2703 3.0842 -0.8848 16 6 8.1897 2.2696 -1.6906 17 6 9.2679 1.7029 -0.8033 18 8 9.2706 1.9532 0.3835 19 7 10.2293 0.9177 -1.3286 20 6 11.2105 0.4026 -0.5214 21 1 11.2133 0.6262 0.5352 22 6 12.2013 -0.4073 -1.0628 23 7 12.1976 -0.6798 -2.3483 24 14 13.5379 -1.1099 0.0370 25 1 13.3179 -0.6572 1.4341 26 1 13.4936 -2.5932 -0.0161 27 1 14.8648 -0.6370 -0.4329 28 6 6.0780 3.4585 -1.6621 29 1 6.4757 3.7213 -2.6423 30 6 5.1296 2.3402 -1.9270 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 2.8071 1.0304 1.9825 35 1 2.7441 2.7258 1.4439 36 1 1.2493 1.8899 1.9288 37 1 2.8023 4.0650 -1.7769 38 1 2.4809 3.5225 -0.1175 39 1 4.5174 4.4110 0.7123 40 1 3.7962 5.6562 -0.3108 41 1 6.3686 5.0669 0.8907 42 1 6.8659 6.3183 -0.2917 43 1 8.5696 4.2940 0.3066 44 1 8.3971 4.8271 -1.3983 45 1 7.6379 1.4541 -2.1581 46 1 8.6438 2.8907 -2.4627 47 1 10.2274 0.7178 -2.2777 48 1 12.8895 -1.2449 -2.7263 49 1 5.6311 1.3996 -1.6994 50 1 4.8756 2.3455 -2.9870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222348353.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:37 Heat of formation + Delta-G solvation = -117.257578 kcal Electronic energy + Delta-G solvation = -31041.690106 eV Core-core repulsion = 26875.528745 eV Total energy + Delta-G solvation = -4166.161361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.96524 -40.72046 -39.69219 -38.55758 -37.10589 -35.96118 -34.52262 -33.29470 -33.18162 -31.14439 -30.98473 -28.22318 -27.70676 -26.46382 -26.13922 -24.30138 -23.90306 -22.41509 -21.27724 -21.07147 -19.95092 -19.13204 -18.69566 -17.99687 -17.64464 -17.20574 -16.82041 -16.56152 -16.41769 -16.33546 -15.97569 -15.89623 -15.66118 -15.32330 -15.19938 -14.79809 -14.40664 -14.13058 -14.00198 -13.86530 -13.81127 -13.54991 -13.40763 -13.25013 -13.03414 -12.96362 -12.76610 -12.59792 -12.43995 -12.27728 -12.15504 -12.12655 -12.04842 -11.76789 -11.53521 -11.45991 -11.35027 -10.95808 -10.52114 -10.35726 -10.04188 -9.67571 -9.32095 -8.49492 -5.98580 1.33590 1.37885 1.49797 1.52946 1.75551 2.01348 2.25394 2.67024 2.93705 3.16217 3.27951 3.43991 3.55877 3.66647 3.78381 3.86604 3.99930 4.04928 4.11488 4.19363 4.26317 4.35330 4.38989 4.42158 4.45562 4.47498 4.51270 4.56798 4.58884 4.66633 4.71040 4.78658 4.85500 4.87317 4.93296 5.00921 5.09411 5.18529 5.21965 5.28530 5.37333 5.43187 5.55354 5.84383 5.97332 6.06038 6.07862 6.39191 6.57275 7.09686 7.13416 7.52234 8.08571 8.68570 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.002891 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.814704 B = 9682.877989 C =11069.115033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.403 6.403 3 C 0.077 3.923 4 H 0.126 0.874 5 C -0.170 4.170 6 C 0.498 3.502 7 O -0.581 6.581 8 N -0.593 5.593 9 C 0.094 3.906 10 C -0.122 4.122 11 C -0.073 4.073 12 H 0.111 0.889 13 C -0.108 4.108 14 C 0.032 3.968 15 N -0.510 5.510 16 C 0.049 3.951 17 C 0.444 3.556 18 O -0.615 6.615 19 N -0.576 5.576 20 C -0.332 4.332 21 H 0.077 0.923 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.995 3.005 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.266 1.266 28 C 0.063 3.937 29 H 0.044 0.956 30 C 0.130 3.870 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.056 0.944 40 H 0.115 0.885 41 H 0.067 0.933 42 H 0.100 0.900 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.092 0.908 46 H 0.075 0.925 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.052 0.948 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.429 16.063 -1.129 30.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.322 6.322 3 C 0.017 3.983 4 H 0.144 0.856 5 C -0.228 4.228 6 C 0.286 3.714 7 O -0.460 6.460 8 N -0.326 5.326 9 C -0.027 4.027 10 C -0.160 4.160 11 C -0.092 4.092 12 H 0.129 0.871 13 C -0.146 4.146 14 C -0.096 4.096 15 N -0.236 5.236 16 C -0.083 4.083 17 C 0.231 3.769 18 O -0.500 6.500 19 N -0.214 5.214 20 C -0.462 4.462 21 H 0.095 0.905 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.818 3.182 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.191 1.191 28 C -0.046 4.046 29 H 0.062 0.938 30 C 0.006 3.994 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.109 0.891 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.074 0.926 40 H 0.133 0.867 41 H 0.085 0.915 42 H 0.118 0.882 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.110 0.890 46 H 0.093 0.907 47 H 0.228 0.772 48 H 0.087 0.913 49 H 0.070 0.930 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -26.020 15.087 -0.098 30.078 hybrid contribution 1.544 -0.655 -0.791 1.855 sum -24.476 14.432 -0.889 28.428 Atomic orbital electron populations 1.23121 0.78358 1.04151 1.01810 1.88049 1.22268 1.26683 1.95200 1.22074 0.91681 0.87002 0.97569 0.85620 1.22320 1.04654 1.02113 0.93676 1.21368 0.88209 0.83487 0.78330 1.90716 1.64944 1.32250 1.58117 1.47263 1.24382 1.07250 1.53690 1.21780 0.95861 0.81880 1.03224 1.21387 0.94315 1.01217 0.99091 1.20943 0.95612 0.93622 0.99003 0.87102 1.22814 0.92749 0.99503 0.99497 1.23378 0.97896 0.88273 1.00023 1.64545 1.04669 1.15497 1.38848 1.21888 0.93434 0.98927 0.94048 1.20688 0.84395 0.82748 0.89100 1.90468 1.77515 1.63962 1.18098 1.41942 1.24143 1.44268 1.11039 1.19680 1.04897 1.28350 0.93236 0.90518 1.26080 1.00577 0.97013 0.97753 1.69685 1.36091 1.38273 1.12237 0.84850 0.77482 0.78045 0.77813 1.19863 1.19641 1.19131 1.21026 0.91536 0.95071 0.96949 0.93764 1.20169 0.85116 0.98893 0.95239 0.92145 0.89033 0.91606 0.93968 0.89144 0.87985 0.88282 0.87313 0.92562 0.86677 0.91454 0.88204 0.92764 0.93097 0.88951 0.90731 0.77168 0.91263 0.92978 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.50 16 2 O -0.40 -9.88 9.95 -130.60 -1.30 -11.17 16 3 C 0.08 1.50 2.27 29.85 0.07 1.57 16 4 H 0.13 1.25 6.81 -2.39 -0.02 1.23 16 5 C -0.17 -2.69 9.08 71.98 0.65 -2.04 16 6 C 0.50 14.50 6.93 87.66 0.61 15.11 16 7 O -0.58 -24.68 15.94 15.36 0.24 -24.44 16 8 N -0.59 -13.48 3.05 -836.73 -2.56 -16.04 16 9 C 0.09 1.03 5.68 86.26 0.49 1.52 16 10 C -0.12 -1.40 5.43 29.70 0.16 -1.24 16 11 C -0.07 -1.19 3.20 -11.26 -0.04 -1.22 16 12 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 13 C -0.11 -2.18 6.53 31.99 0.21 -1.97 16 14 C 0.03 0.98 6.00 86.53 0.52 1.50 16 15 N -0.51 -17.93 4.77 -874.92 -4.18 -22.11 16 16 C 0.05 1.91 5.02 85.55 0.43 2.34 16 17 C 0.44 23.21 7.64 87.65 0.67 23.88 16 18 O -0.61 -36.86 14.87 -3.06 -0.05 -36.91 16 19 N -0.58 -32.05 5.29 -306.98 -1.62 -33.67 16 20 C -0.33 -20.08 9.68 84.04 0.81 -19.27 16 21 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 22 C -0.01 -0.84 5.50 84.93 0.47 -0.37 16 23 N -0.92 -52.31 13.05 21.66 0.28 -52.03 16 24 Si 0.99 45.24 29.55 68.60 2.03 47.27 16 25 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 28 C 0.06 1.56 2.13 43.02 0.09 1.65 16 29 H 0.04 0.99 7.58 -2.39 -0.02 0.97 16 30 C 0.13 3.49 5.82 85.35 0.50 3.99 16 31 H 0.06 0.55 8.09 -2.38 -0.02 0.53 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 0.54 7.99 -2.39 -0.02 0.52 16 34 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.09 1.14 6.28 -2.39 -0.02 1.13 16 36 H 0.10 0.94 7.99 -2.39 -0.02 0.92 16 37 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.11 0.71 4.20 -2.39 -0.01 0.70 16 39 H 0.06 0.87 7.14 -2.38 -0.02 0.85 16 40 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.07 1.50 7.13 -2.39 -0.02 1.48 16 42 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.05 2.13 7.28 -2.39 -0.02 2.11 16 44 H 0.05 1.44 7.82 -2.39 -0.02 1.42 16 45 H 0.09 3.51 6.90 -2.39 -0.02 3.49 16 46 H 0.07 2.53 7.80 -2.39 -0.02 2.51 16 47 H 0.39 20.92 7.90 -92.71 -0.73 20.19 16 48 H 0.28 14.66 8.31 -92.71 -0.77 13.89 16 49 H 0.05 1.94 5.80 -2.39 -0.01 1.93 16 50 H 0.08 1.86 8.13 -2.39 -0.02 1.84 16 Total: -1.00 -89.60 388.68 -0.05 -89.66 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.23 Total: 32.50 kcal Atomic # 6 Polarization: 20.08 SS G_CDS: 6.87 Total: 26.94 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -8.07 Total: -123.86 kcal Atomic # 8 Polarization: -71.42 SS G_CDS: -1.10 Total: -72.52 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -89.60 -0.05 -89.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222348353.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.600 kcal (2) G-P(sol) polarization free energy of solvation -89.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds