Wall clock time and date at job start Tue Mar 31 2020 22:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00304 * 2 1 4 4 O 1.42896 * 109.47380 * 134.72565 * 3 2 1 5 5 C 1.42893 * 114.00082 * 180.02562 * 4 3 2 6 6 H 1.09006 * 109.47142 * 329.99867 * 5 4 3 7 7 C 1.53001 * 109.47586 * 89.99690 * 5 4 3 8 8 C 1.50706 * 109.47286 * 209.99875 * 5 4 3 9 9 O 1.21287 * 119.99657 * 359.97438 * 8 5 4 10 10 N 1.34769 * 120.00241 * 180.02562 * 8 5 4 11 11 C 1.46504 * 120.00094 * 180.02562 * 10 8 5 12 12 C 1.53115 * 109.51898 * 274.86779 * 11 10 8 13 13 C 1.53051 * 109.27431 * 182.50039 * 12 11 10 14 14 N 1.46844 * 109.56891 * 59.08700 * 13 12 11 15 15 C 1.46908 * 110.99857 * 174.19116 * 14 13 12 16 16 C 1.50691 * 109.47164 * 294.21455 * 15 14 13 17 17 O 1.21297 * 120.00390 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00244 * 179.97438 * 16 15 14 19 19 C 1.37099 * 120.00188 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00167 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99598 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00443 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99841 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47068 * 59.99477 * 23 21 19 25 25 H 1.48498 * 109.47529 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47092 * 299.99850 * 23 21 19 27 27 C 1.46850 * 111.20217 * 298.28627 * 14 13 12 28 28 C 1.53039 * 109.51798 * 61.74645 * 27 14 13 29 29 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99740 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.00336 * 179.72373 * 2 1 3 32 32 H 1.09002 * 109.47083 * 254.72833 * 3 2 1 33 33 H 1.08994 * 109.46574 * 14.72141 * 3 2 1 34 34 H 1.09006 * 109.46736 * 59.99928 * 7 5 4 35 35 H 1.08997 * 109.47407 * 180.02562 * 7 5 4 36 36 H 1.09001 * 109.47372 * 300.00287 * 7 5 4 37 37 H 0.97006 * 120.00155 * 359.97438 * 10 8 5 38 38 H 1.08997 * 109.52155 * 34.99547 * 11 10 8 39 39 H 1.08994 * 109.51027 * 302.38321 * 12 11 10 40 40 H 1.08999 * 109.50257 * 62.50322 * 12 11 10 41 41 H 1.08994 * 109.40903 * 299.07311 * 13 12 11 42 42 H 1.08999 * 109.45299 * 179.13121 * 13 12 11 43 43 H 1.09002 * 109.46586 * 54.20872 * 15 14 13 44 44 H 1.09003 * 109.47158 * 174.20597 * 15 14 13 45 45 H 0.97004 * 119.99697 * 0.02562 * 18 16 15 46 46 H 0.97000 * 120.00061 * 179.97438 * 22 21 19 47 47 H 1.08997 * 109.46164 * 301.73311 * 27 14 13 48 48 H 1.08997 * 109.45169 * 181.75330 * 27 14 13 49 49 H 1.08996 * 109.50460 * 180.88046 * 28 27 14 50 50 H 1.08995 * 109.50493 * 60.76267 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1228 1.2436 0.9572 5 6 3.9034 2.4377 1.0377 6 1 3.9125 2.9321 0.0663 7 6 3.2944 3.3759 2.0817 8 6 5.3142 2.0896 1.4374 9 8 5.6207 0.9328 1.6344 10 7 6.2349 3.0638 1.5770 11 6 7.6065 2.7253 1.9650 12 6 7.6974 2.6280 3.4903 13 6 9.1450 2.3359 3.8925 14 7 10.0186 3.4078 3.3983 15 6 11.3941 3.2316 3.8833 16 6 11.4240 3.3989 5.3806 17 8 10.4004 3.6416 5.9844 18 7 12.5882 3.2789 6.0490 19 6 12.6155 3.4317 7.4112 20 1 11.7041 3.6478 7.9487 21 6 13.8159 3.3085 8.1001 22 7 14.9248 3.0451 7.4461 23 14 13.8530 3.5160 9.9562 24 1 12.9721 2.4996 10.5856 25 1 15.2433 3.3373 10.4466 26 1 13.3731 4.8755 10.3120 27 6 9.9838 3.4878 1.9324 28 6 8.5617 3.8157 1.4718 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9353 0.0045 32 1 2.4796 1.4844 -0.9914 33 1 1.3844 2.1167 0.2611 34 1 3.2853 2.8815 3.0531 35 1 3.8897 4.2869 2.1427 36 1 2.2740 3.6277 1.7926 37 1 5.9897 3.9891 1.4198 38 1 7.8850 1.7693 1.5217 39 1 7.3805 3.5714 3.9348 40 1 7.0516 1.8239 3.8428 41 1 9.4563 1.3852 3.4600 42 1 9.2159 2.2814 4.9789 43 1 11.7463 2.2336 3.6222 44 1 12.0407 3.9776 3.4212 45 1 13.4069 3.0852 5.5662 46 1 15.7629 2.9595 7.9270 47 1 10.2912 2.5315 1.5091 48 1 10.6641 4.2698 1.5953 49 1 8.5327 3.8596 0.3831 50 1 8.2587 4.7784 1.8836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230407749.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:38 Heat of formation + Delta-G solvation = -92.919293 kcal Electronic energy + Delta-G solvation = -29232.718653 eV Core-core repulsion = 25067.612679 eV Total energy + Delta-G solvation = -4165.105974 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.41274 -39.14723 -38.21462 -37.38216 -34.99198 -34.45742 -33.83765 -32.36365 -31.24780 -30.75826 -30.64076 -27.17344 -26.63920 -24.93571 -24.08297 -23.11420 -22.44684 -20.70355 -20.34369 -19.79905 -19.16077 -17.83327 -17.59228 -17.49163 -16.38388 -15.98922 -15.78637 -15.51273 -15.24397 -14.97246 -14.88404 -14.58823 -14.15483 -13.87770 -13.76126 -13.71394 -13.39381 -13.24306 -13.19461 -13.03928 -12.77753 -12.49131 -12.28701 -11.88827 -11.86697 -11.65828 -11.47645 -11.34046 -11.15293 -11.06979 -11.02632 -10.62792 -10.55199 -10.49160 -10.41810 -10.19059 -9.82182 -9.64540 -9.45232 -9.12961 -8.40623 -7.95139 -7.81409 -6.39302 -3.80004 1.69481 2.42446 2.67651 3.21868 3.27411 3.31813 3.58260 3.92939 4.00851 4.26479 4.30045 4.45831 4.54431 4.59644 4.68427 4.72132 4.88689 4.92955 5.02516 5.05319 5.08711 5.15618 5.27111 5.27915 5.36265 5.44283 5.45474 5.57279 5.65189 5.70581 5.71236 5.82872 5.85210 5.99457 6.02139 6.13118 6.14194 6.19368 6.26776 6.32288 6.48908 6.57021 6.69324 7.28411 7.34973 7.45228 7.57363 8.06155 8.08891 8.64597 9.20609 9.57239 10.09249 10.78374 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023874 B = 0.001752 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.544444 B =15974.987786 C =16574.716318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.149 4.149 3 C 0.086 3.914 4 O -0.352 6.352 5 C 0.071 3.929 6 H 0.086 0.914 7 C -0.172 4.172 8 C 0.513 3.487 9 O -0.517 6.517 10 N -0.722 5.722 11 C 0.144 3.856 12 C -0.120 4.120 13 C 0.055 3.945 14 N -0.516 5.516 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.577 6.577 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.058 3.942 28 C -0.119 4.119 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.399 0.601 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.023 0.977 42 H 0.107 0.893 43 H 0.047 0.953 44 H 0.089 0.911 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.032 0.968 48 H 0.079 0.921 49 H 0.069 0.931 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.265 1.014 -19.461 28.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.167 4.167 3 C 0.009 3.991 4 O -0.271 6.271 5 C 0.010 3.990 6 H 0.104 0.896 7 C -0.229 4.229 8 C 0.297 3.703 9 O -0.391 6.391 10 N -0.375 5.375 11 C 0.040 3.960 12 C -0.159 4.159 13 C -0.073 4.073 14 N -0.241 5.241 15 C -0.085 4.085 16 C 0.229 3.771 17 O -0.461 6.461 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.071 4.071 28 C -0.158 4.158 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.136 0.864 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.233 0.767 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.042 0.958 42 H 0.125 0.875 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.050 0.950 48 H 0.097 0.903 49 H 0.088 0.912 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.677 0.560 -18.537 28.528 hybrid contribution 0.801 -0.092 0.024 0.806 sum -20.877 0.467 -18.513 27.907 Atomic orbital electron populations 1.23841 0.95485 1.02321 1.00075 1.22732 0.95600 0.98243 1.00156 1.21666 0.89032 0.96205 0.92149 1.88095 1.44147 1.35072 1.59739 1.21907 0.89718 0.87347 1.00069 0.89616 1.22253 1.01705 0.98910 1.00062 1.20344 0.86354 0.85890 0.77671 1.90745 1.80406 1.19430 1.48506 1.46033 1.10692 1.09828 1.70959 1.21138 0.79826 0.99140 0.95859 1.21913 0.97008 1.02884 0.94060 1.22219 0.91169 0.90516 1.03404 1.61544 1.08141 1.46879 1.07493 1.21833 0.89963 1.00661 0.96049 1.19746 0.84742 0.84529 0.88071 1.90483 1.33024 1.53409 1.69218 1.41863 1.08120 1.62248 1.07869 1.19648 0.95718 1.45429 0.82065 0.87976 1.25247 0.94784 0.97301 1.00566 1.69604 0.99068 1.48918 1.36782 0.85926 0.77046 0.79048 0.82234 1.19948 1.21010 1.19921 1.22028 0.96175 1.00370 0.88522 1.21827 0.94670 0.99127 1.00139 0.87687 0.88440 0.86351 0.92188 0.92556 0.90795 0.90758 0.91278 0.76730 0.89779 0.90688 0.91378 0.95836 0.87504 0.93457 0.89323 0.77506 0.91862 0.94980 0.90279 0.91194 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 14.31 29.02 0.42 -0.64 16 2 C -0.15 -1.13 9.89 -36.02 -0.36 -1.48 16 3 C 0.09 0.64 6.16 36.01 0.22 0.86 16 4 O -0.35 -3.85 9.50 -55.14 -0.52 -4.38 16 5 C 0.07 0.61 3.14 -27.88 -0.09 0.52 16 6 H 0.09 0.48 7.79 -51.93 -0.40 0.08 16 7 C -0.17 -1.14 9.42 37.16 0.35 -0.79 16 8 C 0.51 6.04 7.20 -10.99 -0.08 5.96 16 9 O -0.52 -8.65 16.16 -14.36 -0.23 -8.88 16 10 N -0.72 -6.89 4.97 -53.69 -0.27 -7.16 16 11 C 0.14 1.70 2.52 -67.81 -0.17 1.52 16 12 C -0.12 -1.73 5.68 -26.65 -0.15 -1.88 16 13 C 0.05 0.93 5.10 -3.83 -0.02 0.91 16 14 N -0.52 -8.45 4.40 -236.11 -1.04 -9.49 16 15 C 0.05 0.82 5.45 -4.98 -0.03 0.80 16 16 C 0.44 10.44 7.46 -10.99 -0.08 10.35 16 17 O -0.58 -15.43 13.90 5.54 0.08 -15.35 16 18 N -0.56 -14.30 5.29 -10.97 -0.06 -14.36 16 19 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 23 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.06 0.71 5.46 -3.83 -0.02 0.69 16 28 C -0.12 -1.20 5.57 -26.65 -0.15 -1.35 16 29 H 0.10 0.51 8.06 -52.49 -0.42 0.08 16 30 H 0.10 0.45 7.90 -52.48 -0.41 0.04 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.06 0.32 7.59 -51.93 -0.39 -0.08 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.36 7.56 -51.93 -0.39 -0.03 16 36 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 37 H 0.40 2.53 8.02 -40.82 -0.33 2.20 16 38 H 0.08 1.14 7.58 -51.93 -0.39 0.74 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.11 2.20 5.78 -51.93 -0.30 1.90 16 43 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 44 H 0.09 1.41 7.99 -51.93 -0.41 0.99 16 45 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 46 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 409.46 15.07 6.17 6.17 Total: -1.00 -34.68 409.46 -8.91 -43.60 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -8.35 Total: 10.10 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -0.40 Total: 7.48 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.64 Total: -54.88 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.68 Total: -28.61 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.68 -8.91 -43.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230407749.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.321 kcal (2) G-P(sol) polarization free energy of solvation -34.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds