Wall clock time and date at job start Tue Mar 31 2020 22:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00304 * 2 1 4 4 O 1.42896 * 109.47380 * 134.72565 * 3 2 1 5 5 C 1.42893 * 114.00082 * 180.02562 * 4 3 2 6 6 H 1.09006 * 109.47142 * 329.99867 * 5 4 3 7 7 C 1.53001 * 109.47586 * 89.99690 * 5 4 3 8 8 C 1.50706 * 109.47286 * 209.99875 * 5 4 3 9 9 O 1.21287 * 119.99657 * 359.97438 * 8 5 4 10 10 N 1.34769 * 120.00241 * 180.02562 * 8 5 4 11 11 C 1.46504 * 120.00094 * 180.02562 * 10 8 5 12 12 C 1.53115 * 109.51898 * 274.86779 * 11 10 8 13 13 C 1.53051 * 109.27431 * 182.50039 * 12 11 10 14 14 N 1.46844 * 109.56891 * 59.08700 * 13 12 11 15 15 C 1.46908 * 110.99857 * 174.19116 * 14 13 12 16 16 C 1.50691 * 109.47164 * 294.21455 * 15 14 13 17 17 O 1.21297 * 120.00390 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00244 * 179.97438 * 16 15 14 19 19 C 1.37099 * 120.00188 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00167 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99598 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00443 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99841 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47068 * 59.99477 * 23 21 19 25 25 H 1.48498 * 109.47529 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47092 * 299.99850 * 23 21 19 27 27 C 1.46850 * 111.20217 * 298.28627 * 14 13 12 28 28 C 1.53039 * 109.51798 * 61.74645 * 27 14 13 29 29 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99740 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.00336 * 179.72373 * 2 1 3 32 32 H 1.09002 * 109.47083 * 254.72833 * 3 2 1 33 33 H 1.08994 * 109.46574 * 14.72141 * 3 2 1 34 34 H 1.09006 * 109.46736 * 59.99928 * 7 5 4 35 35 H 1.08997 * 109.47407 * 180.02562 * 7 5 4 36 36 H 1.09001 * 109.47372 * 300.00287 * 7 5 4 37 37 H 0.97006 * 120.00155 * 359.97438 * 10 8 5 38 38 H 1.08997 * 109.52155 * 34.99547 * 11 10 8 39 39 H 1.08994 * 109.51027 * 302.38321 * 12 11 10 40 40 H 1.08999 * 109.50257 * 62.50322 * 12 11 10 41 41 H 1.08994 * 109.40903 * 299.07311 * 13 12 11 42 42 H 1.08999 * 109.45299 * 179.13121 * 13 12 11 43 43 H 1.09002 * 109.46586 * 54.20872 * 15 14 13 44 44 H 1.09003 * 109.47158 * 174.20597 * 15 14 13 45 45 H 0.97004 * 119.99697 * 0.02562 * 18 16 15 46 46 H 0.97000 * 120.00061 * 179.97438 * 22 21 19 47 47 H 1.08997 * 109.46164 * 301.73311 * 27 14 13 48 48 H 1.08997 * 109.45169 * 181.75330 * 27 14 13 49 49 H 1.08996 * 109.50460 * 180.88046 * 28 27 14 50 50 H 1.08995 * 109.50493 * 60.76267 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1228 1.2436 0.9572 5 6 3.9034 2.4377 1.0377 6 1 3.9125 2.9321 0.0663 7 6 3.2944 3.3759 2.0817 8 6 5.3142 2.0896 1.4374 9 8 5.6207 0.9328 1.6344 10 7 6.2349 3.0638 1.5770 11 6 7.6065 2.7253 1.9650 12 6 7.6974 2.6280 3.4903 13 6 9.1450 2.3359 3.8925 14 7 10.0186 3.4078 3.3983 15 6 11.3941 3.2316 3.8833 16 6 11.4240 3.3989 5.3806 17 8 10.4004 3.6416 5.9844 18 7 12.5882 3.2789 6.0490 19 6 12.6155 3.4317 7.4112 20 1 11.7041 3.6478 7.9487 21 6 13.8159 3.3085 8.1001 22 7 14.9248 3.0451 7.4461 23 14 13.8530 3.5160 9.9562 24 1 12.9721 2.4996 10.5856 25 1 15.2433 3.3373 10.4466 26 1 13.3731 4.8755 10.3120 27 6 9.9838 3.4878 1.9324 28 6 8.5617 3.8157 1.4718 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9353 0.0045 32 1 2.4796 1.4844 -0.9914 33 1 1.3844 2.1167 0.2611 34 1 3.2853 2.8815 3.0531 35 1 3.8897 4.2869 2.1427 36 1 2.2740 3.6277 1.7926 37 1 5.9897 3.9891 1.4198 38 1 7.8850 1.7693 1.5217 39 1 7.3805 3.5714 3.9348 40 1 7.0516 1.8239 3.8428 41 1 9.4563 1.3852 3.4600 42 1 9.2159 2.2814 4.9789 43 1 11.7463 2.2336 3.6222 44 1 12.0407 3.9776 3.4212 45 1 13.4069 3.0852 5.5662 46 1 15.7629 2.9595 7.9270 47 1 10.2912 2.5315 1.5091 48 1 10.6641 4.2698 1.5953 49 1 8.5327 3.8596 0.3831 50 1 8.2587 4.7784 1.8836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230407749.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:37 Heat of formation + Delta-G solvation = -118.952967 kcal Electronic energy + Delta-G solvation = -29233.847557 eV Core-core repulsion = 25067.612679 eV Total energy + Delta-G solvation = -4166.234879 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.35542 -40.50583 -39.36059 -38.59037 -36.24195 -35.72972 -35.00321 -33.42431 -33.12001 -31.81981 -31.57583 -28.65157 -27.17625 -26.46917 -25.18867 -24.23353 -23.55034 -21.49519 -21.15059 -20.98589 -20.69216 -19.85923 -18.34338 -18.26899 -17.67545 -17.21517 -16.76426 -16.56010 -16.44000 -16.27998 -15.99912 -15.83341 -15.53447 -15.34584 -15.10891 -14.71068 -14.49667 -14.31335 -14.16349 -13.76692 -13.74615 -13.48864 -13.44063 -13.18151 -12.99775 -12.92890 -12.77634 -12.51091 -12.43252 -12.30360 -12.18060 -12.11349 -11.85748 -11.85209 -11.55763 -11.42654 -11.21883 -10.59847 -10.29515 -10.25531 -10.07566 -9.96569 -9.20056 -8.45158 -5.93606 1.18546 1.39918 1.41523 1.52351 1.54091 1.91525 2.07657 2.29160 2.77024 2.96879 3.21650 3.39089 3.59259 3.77067 3.86389 3.89343 4.00316 4.07581 4.10202 4.20275 4.21916 4.30442 4.37163 4.40834 4.48283 4.52985 4.56620 4.57068 4.63991 4.69137 4.75870 4.79198 4.91272 4.98604 4.99344 5.08558 5.12714 5.19828 5.30192 5.41869 5.47056 5.65175 5.69728 5.89628 6.07854 6.11470 6.25620 6.56485 6.62709 7.14678 7.23135 7.58651 8.14884 8.71991 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023874 B = 0.001752 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.544444 B =15974.987786 C =16574.716318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.179 4.179 3 C 0.083 3.917 4 O -0.390 6.390 5 C 0.073 3.927 6 H 0.124 0.876 7 C -0.167 4.167 8 C 0.507 3.493 9 O -0.576 6.576 10 N -0.704 5.704 11 C 0.152 3.848 12 C -0.110 4.110 13 C 0.060 3.940 14 N -0.528 5.528 15 C 0.057 3.943 16 C 0.440 3.560 17 O -0.614 6.614 18 N -0.575 5.575 19 C -0.333 4.333 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.992 3.008 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.271 1.271 27 C 0.053 3.947 28 C -0.108 4.108 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.418 0.582 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.024 0.976 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.117 0.883 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.039 0.961 48 H 0.101 0.899 49 H 0.104 0.896 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.057 2.924 -21.545 30.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.197 4.197 3 C 0.008 3.992 4 O -0.309 6.309 5 C 0.012 3.988 6 H 0.141 0.859 7 C -0.225 4.225 8 C 0.294 3.706 9 O -0.454 6.454 10 N -0.358 5.358 11 C 0.047 3.953 12 C -0.149 4.149 13 C -0.069 4.069 14 N -0.254 5.254 15 C -0.074 4.074 16 C 0.228 3.772 17 O -0.500 6.500 18 N -0.212 5.212 19 C -0.463 4.463 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.074 4.074 28 C -0.146 4.146 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.256 0.744 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.042 0.958 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.135 0.865 45 H 0.230 0.770 46 H 0.086 0.914 47 H 0.057 0.943 48 H 0.119 0.881 49 H 0.122 0.878 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.472 2.517 -20.663 30.631 hybrid contribution 0.971 -0.717 0.642 1.367 sum -21.501 1.800 -20.021 29.434 Atomic orbital electron populations 1.24057 0.94900 1.03555 0.97611 1.22781 0.96378 0.98041 1.02527 1.21844 0.88659 0.96635 0.92111 1.88058 1.45293 1.36629 1.60960 1.22047 0.87252 0.87127 1.02329 0.85888 1.22260 1.03296 0.98857 0.98051 1.21114 0.87868 0.85211 0.76436 1.90719 1.81548 1.21932 1.51250 1.45837 1.09571 1.10666 1.69708 1.20916 0.81566 0.99480 0.93363 1.21774 0.94940 1.01663 0.96528 1.22010 0.93015 0.91154 1.00686 1.61528 1.06973 1.46362 1.10492 1.21735 0.91675 1.02410 0.91590 1.20816 0.83492 0.82367 0.90560 1.90463 1.34194 1.54465 1.70867 1.41930 1.08925 1.63072 1.07301 1.19617 0.95478 1.47605 0.83589 0.90392 1.26005 0.94085 0.96386 1.04716 1.69665 0.99417 1.48745 1.38310 0.85010 0.77588 0.78858 0.76993 1.19978 1.19453 1.19640 1.22230 0.98234 1.01606 0.85357 1.21798 0.92484 0.98254 1.02093 0.86927 0.86688 0.88129 0.91003 0.90361 0.93428 0.88584 0.89175 0.74362 0.91501 0.91183 0.93411 0.95817 0.92019 0.91955 0.86495 0.77047 0.91350 0.94280 0.88077 0.87786 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 14.31 67.79 0.97 -0.72 16 2 C -0.18 -2.64 9.89 25.65 0.25 -2.39 16 3 C 0.08 1.11 6.16 71.24 0.44 1.55 16 4 O -0.39 -8.37 9.50 -129.94 -1.23 -9.60 16 5 C 0.07 1.13 3.14 29.85 0.09 1.22 16 6 H 0.12 0.95 7.79 -2.38 -0.02 0.93 16 7 C -0.17 -1.87 9.42 71.98 0.68 -1.19 16 8 C 0.51 11.68 7.20 87.66 0.63 12.31 16 9 O -0.58 -20.03 16.16 15.99 0.26 -19.77 16 10 N -0.70 -12.23 4.97 -442.16 -2.20 -14.43 16 11 C 0.15 3.39 2.52 45.07 0.11 3.51 16 12 C -0.11 -3.27 5.68 30.65 0.17 -3.09 16 13 C 0.06 2.09 5.10 86.33 0.44 2.53 16 14 N -0.53 -16.83 4.40 -900.90 -3.96 -20.80 16 15 C 0.06 1.98 5.45 85.55 0.47 2.45 16 16 C 0.44 21.19 7.46 87.65 0.65 21.85 16 17 O -0.61 -34.18 13.90 -3.08 -0.04 -34.23 16 18 N -0.57 -29.84 5.29 -306.99 -1.62 -31.46 16 19 C -0.33 -19.16 9.68 84.04 0.81 -18.35 16 20 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 22 N -0.92 -50.10 13.05 21.66 0.28 -49.82 16 23 Si 0.99 43.53 29.55 68.60 2.03 45.55 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 C 0.05 1.15 5.46 86.33 0.47 1.62 16 28 C -0.11 -1.82 5.57 30.65 0.17 -1.65 16 29 H 0.11 0.94 8.06 -2.91 -0.02 0.92 16 30 H 0.11 0.77 7.90 -2.91 -0.02 0.74 16 31 H 0.10 1.77 8.06 -2.91 -0.02 1.74 16 32 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 33 H 0.08 0.66 7.59 -2.39 -0.02 0.64 16 34 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.10 0.62 7.56 -2.39 -0.02 0.60 16 36 H 0.09 0.65 7.87 -2.39 -0.02 0.63 16 37 H 0.42 3.94 8.02 -92.70 -0.74 3.20 16 38 H 0.07 1.79 7.58 -2.39 -0.02 1.77 16 39 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 41 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.06 2.72 5.78 -2.39 -0.01 2.70 16 43 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 44 H 0.12 3.43 7.99 -2.39 -0.02 3.41 16 45 H 0.40 19.49 7.90 -92.70 -0.73 18.76 16 46 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 47 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.10 1.80 8.01 -2.39 -0.02 1.78 16 49 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -80.44 409.46 -0.19 -80.63 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: -0.53 Total: 34.47 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 6.84 Total: 19.45 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -7.50 Total: -116.51 kcal Atomic # 8 Polarization: -62.58 SS G_CDS: -1.02 Total: -63.59 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -80.44 -0.19 -80.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230407749.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.318 kcal (2) G-P(sol) polarization free energy of solvation -80.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds