Wall clock time and date at job start Wed Apr 1 2020 00:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46891 * 109.47397 * 2 1 4 4 C 1.46909 * 110.99874 * 59.18505 * 3 2 1 5 5 C 1.53003 * 109.47056 * 66.04736 * 4 3 2 6 6 N 1.46499 * 109.47096 * 180.02562 * 5 4 3 7 7 C 1.34776 * 119.99775 * 179.97438 * 6 5 4 8 8 O 1.21275 * 120.00212 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99785 * 179.97438 * 7 6 5 10 10 H 1.09008 * 110.66564 * 56.78203 * 9 7 6 11 11 C 1.55005 * 110.90370 * 293.46011 * 9 7 6 12 12 C 1.55820 * 102.78456 * 241.59830 * 11 9 7 13 13 H 1.09003 * 115.38375 * 158.11278 * 12 11 9 14 14 C 1.56255 * 105.42734 * 287.30367 * 12 11 9 15 15 C 1.55005 * 102.58463 * 72.57993 * 14 12 11 16 16 C 1.55814 * 110.75112 * 179.97438 * 9 7 6 17 17 H 1.09001 * 115.38835 * 319.67362 * 16 9 7 18 18 O 1.46532 * 101.24497 * 32.42201 * 12 11 9 19 19 C 1.46895 * 111.00290 * 295.23178 * 3 2 1 20 20 C 1.50698 * 109.47023 * 288.23693 * 19 3 2 21 21 O 1.21292 * 119.99986 * 354.29988 * 20 19 3 22 22 N 1.34773 * 119.99968 * 174.29914 * 20 19 3 23 23 C 1.37099 * 120.00299 * 180.02562 * 22 20 19 24 24 H 1.08005 * 119.99768 * 359.97438 * 23 22 20 25 25 C 1.38950 * 120.00457 * 180.02562 * 23 22 20 26 26 N 1.31414 * 119.99615 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00223 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.46996 * 59.99756 * 27 25 23 29 29 H 1.48497 * 109.47107 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47219 * 300.00177 * 27 25 23 31 31 H 1.08999 * 109.47344 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46965 * 299.98425 * 1 2 3 33 33 H 1.09000 * 109.47227 * 59.98197 * 1 2 3 34 34 H 1.09006 * 109.46741 * 239.99609 * 2 1 3 35 35 H 1.08999 * 109.46889 * 120.00748 * 2 1 3 36 36 H 1.08995 * 109.46774 * 306.04523 * 4 3 2 37 37 H 1.08995 * 109.47037 * 186.04539 * 4 3 2 38 38 H 1.08998 * 109.47445 * 59.99702 * 5 4 3 39 39 H 1.09002 * 109.46913 * 300.00216 * 5 4 3 40 40 H 0.96999 * 120.00151 * 359.97438 * 6 5 4 41 41 H 1.08990 * 110.75124 * 359.92873 * 11 9 7 42 42 H 1.09004 * 110.74851 * 123.27760 * 11 9 7 43 43 H 1.09004 * 110.81104 * 314.34395 * 14 12 11 44 44 H 1.08987 * 110.87802 * 190.85428 * 14 12 11 45 45 H 1.08995 * 110.74745 * 241.71524 * 15 14 12 46 46 H 1.08994 * 110.74688 * 118.54952 * 15 14 12 47 47 H 1.09000 * 109.47069 * 48.23707 * 19 3 2 48 48 H 1.08998 * 109.47474 * 168.23678 * 19 3 2 49 49 H 0.97002 * 120.00048 * 0.02562 * 22 20 19 50 50 H 0.97001 * 119.99273 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5328 2.1154 1.1779 5 6 2.1476 1.5120 2.4424 6 7 1.6616 2.2401 3.6170 7 6 2.0720 1.8813 4.8496 8 8 2.8432 0.9554 4.9864 9 6 1.5725 2.6307 6.0580 10 1 0.4832 2.6149 6.0973 11 6 2.1011 4.0878 6.0626 12 6 2.9445 4.1445 7.3716 13 1 3.7020 4.9275 7.4059 14 6 1.9034 4.1515 8.5368 15 6 1.3758 2.6941 8.5271 16 6 2.1801 2.0386 7.3649 17 1 2.2475 0.9511 7.3981 18 8 3.4478 2.7704 7.4470 19 6 1.6441 2.0761 -1.2405 20 6 2.4641 1.5369 -2.3841 21 8 3.3516 0.7382 -2.1703 22 7 2.2113 1.9420 -3.6444 23 6 2.9569 1.4510 -4.6849 24 1 3.7471 0.7399 -4.4946 25 6 2.6966 1.8690 -5.9842 26 7 1.7353 2.7347 -6.2157 27 14 3.7130 1.2006 -7.4018 28 1 3.5656 -0.2758 -7.4636 29 1 3.2393 1.7986 -8.6758 30 1 5.1418 1.5469 -7.1930 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5136 0.8901 33 1 -0.3634 0.5141 -0.8898 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5140 0.8899 36 1 0.4468 2.0387 1.2296 37 1 1.8197 3.1640 1.0993 38 1 3.2337 1.5886 2.3906 39 1 1.8607 0.4633 2.5210 40 1 1.0445 2.9804 3.5077 41 1 2.7282 4.2738 5.1908 42 1 1.2753 4.7980 6.1042 43 1 1.0969 4.8555 8.3313 44 1 2.3854 4.3814 9.4869 45 1 0.3065 2.6719 8.3169 46 1 1.5920 2.1989 9.4737 47 1 0.5858 1.9107 -1.4425 48 1 1.8305 3.1446 -1.1319 49 1 1.5017 2.5809 -3.8153 50 1 1.5539 3.0268 -7.1228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266418189.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:30 Heat of formation + Delta-G solvation = -95.488501 kcal Electronic energy + Delta-G solvation = -29504.433557 eV Core-core repulsion = 25339.216174 eV Total energy + Delta-G solvation = -4165.217383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.45522 -39.39638 -38.74257 -37.08436 -34.79868 -33.82139 -32.79892 -31.56467 -31.23502 -30.30659 -30.08448 -29.24874 -26.23429 -24.29298 -24.19804 -23.03160 -21.99571 -21.01377 -20.54027 -19.92781 -18.93092 -17.80049 -17.73195 -16.99519 -16.46562 -16.15659 -15.95952 -15.69466 -15.43709 -15.08814 -14.72492 -14.50966 -14.37623 -14.02481 -13.63397 -13.36315 -13.28997 -13.05328 -13.02146 -12.95500 -12.29195 -12.14420 -12.08659 -11.98467 -11.84670 -11.66981 -11.53825 -11.49606 -11.43978 -11.37686 -11.11692 -10.94965 -10.91859 -10.45970 -10.43027 -10.32454 -10.19595 -9.89627 -9.45495 -9.18460 -8.46462 -7.95061 -7.86329 -6.40103 -3.80653 2.45679 2.83968 3.21424 3.26739 3.31483 3.42455 3.93482 3.97309 4.03300 4.12156 4.24776 4.27733 4.39745 4.57362 4.62884 4.71306 4.79901 4.81234 4.95191 4.98947 5.05814 5.09371 5.23878 5.31577 5.32046 5.38323 5.38865 5.41812 5.52440 5.54336 5.59985 5.61545 5.66405 5.67689 5.83053 5.85686 5.94903 6.06212 6.17551 6.22848 6.28184 6.31929 6.51697 7.20037 7.29661 7.33449 7.56736 8.05682 8.08257 8.64271 9.20421 9.56734 10.09250 10.77693 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028616 B = 0.001738 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.252334 B =16103.215920 C =16313.994127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 N -0.507 5.507 4 C 0.041 3.959 5 C 0.122 3.878 6 N -0.729 5.729 7 C 0.522 3.478 8 O -0.529 6.529 9 C -0.142 4.142 10 H 0.108 0.892 11 C -0.139 4.139 12 C 0.059 3.941 13 H 0.132 0.868 14 C -0.148 4.148 15 C -0.151 4.151 16 C 0.089 3.911 17 H 0.137 0.863 18 O -0.362 6.362 19 C 0.043 3.957 20 C 0.445 3.555 21 O -0.574 6.574 22 N -0.566 5.566 23 C -0.298 4.298 24 H 0.102 0.898 25 C 0.022 3.978 26 N -0.904 5.904 27 Si 0.930 3.070 28 H -0.274 1.274 29 H -0.285 1.285 30 H -0.274 1.274 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.042 0.958 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.398 0.602 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.054 0.946 48 H 0.087 0.913 49 H 0.391 0.609 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.501 5.905 27.028 28.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.081 4.081 3 N -0.230 5.230 4 C -0.088 4.088 5 C -0.002 4.002 6 N -0.382 5.382 7 C 0.307 3.693 8 O -0.404 6.404 9 C -0.163 4.163 10 H 0.126 0.874 11 C -0.177 4.177 12 C 0.001 3.999 13 H 0.149 0.851 14 C -0.186 4.186 15 C -0.188 4.188 16 C 0.031 3.969 17 H 0.155 0.845 18 O -0.280 6.280 19 C -0.088 4.088 20 C 0.230 3.770 21 O -0.457 6.457 22 N -0.204 5.204 23 C -0.427 4.427 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.545 5.545 27 Si 0.757 3.243 28 H -0.200 1.200 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.231 0.769 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.105 0.895 49 H 0.224 0.776 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.625 4.654 27.104 28.287 hybrid contribution -1.530 0.699 -1.150 2.038 sum -8.156 5.353 25.954 27.727 Atomic orbital electron populations 1.22458 0.98969 1.02303 1.01527 1.22268 0.91856 0.89879 1.04074 1.61660 1.59174 1.02056 1.00147 1.22280 0.97571 0.98571 0.90396 1.21331 1.00243 0.95944 0.82648 1.45938 1.49341 1.36657 1.06220 1.20279 0.80991 0.84018 0.83976 1.90738 1.34181 1.29424 1.86047 1.23100 1.02078 0.96488 0.94665 0.87411 1.23274 1.00425 0.94312 0.99670 1.24799 0.94772 0.86754 0.93595 0.85070 1.23329 0.98828 0.96961 0.99470 1.23279 1.00108 0.95924 0.99532 1.24492 0.82827 0.98395 0.91207 0.84522 1.90182 1.27137 1.16534 1.94196 1.21920 0.98008 0.98802 0.90111 1.19730 0.87457 0.86346 0.83500 1.90526 1.34256 1.37041 1.83917 1.41858 1.32957 1.40686 1.04869 1.19648 1.14481 1.23726 0.84880 0.87992 1.25244 0.97237 0.96744 0.98740 1.69606 1.30694 1.32012 1.22208 0.85925 0.79762 0.79018 0.79563 1.19952 1.21025 1.19909 0.92110 0.92923 0.92267 0.88791 0.90901 0.93991 0.90429 0.90291 0.91219 0.76875 0.90068 0.89528 0.90441 0.90645 0.90446 0.90383 0.92859 0.89496 0.77592 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.46 9.27 37.16 0.34 -2.12 16 2 C 0.05 0.73 5.52 -3.83 -0.02 0.71 16 3 N -0.51 -8.10 4.31 -236.08 -1.02 -9.11 16 4 C 0.04 0.47 4.81 -3.82 -0.02 0.45 16 5 C 0.12 1.46 5.60 -4.04 -0.02 1.44 16 6 N -0.73 -6.83 5.56 -60.29 -0.33 -7.16 16 7 C 0.52 5.81 6.99 -10.98 -0.08 5.73 16 8 O -0.53 -8.37 15.92 5.56 0.09 -8.28 16 9 C -0.14 -1.05 2.88 -89.21 -0.26 -1.31 16 10 H 0.11 0.52 7.80 -51.92 -0.41 0.11 16 11 C -0.14 -0.85 6.16 -24.17 -0.15 -1.00 16 12 C 0.06 0.41 5.71 -23.48 -0.13 0.28 16 13 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 14 C -0.15 -0.76 6.56 -23.93 -0.16 -0.92 16 15 C -0.15 -0.85 6.51 -24.18 -0.16 -1.01 16 16 C 0.09 0.77 4.59 -23.73 -0.11 0.66 16 17 H 0.14 1.29 7.80 -51.93 -0.40 0.88 16 18 O -0.36 -4.03 11.65 -35.23 -0.41 -4.44 16 19 C 0.04 0.74 5.34 -4.98 -0.03 0.71 16 20 C 0.44 10.39 7.36 -10.99 -0.08 10.31 16 21 O -0.57 -15.55 14.70 5.55 0.08 -15.47 16 22 N -0.57 -14.24 5.29 -10.96 -0.06 -14.30 16 23 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 24 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -24.49 13.05 55.50 0.72 -23.76 16 27 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 30 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.58 6.26 -51.93 -0.33 0.25 16 33 H 0.06 0.80 6.29 -51.93 -0.33 0.47 16 34 H 0.09 1.79 6.54 -51.93 -0.34 1.45 16 35 H 0.07 1.06 6.51 -51.93 -0.34 0.72 16 36 H 0.04 0.43 5.98 -51.93 -0.31 0.12 16 37 H 0.08 0.83 7.86 -51.93 -0.41 0.42 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.07 0.91 6.57 -51.93 -0.34 0.57 16 40 H 0.40 2.47 8.47 -40.82 -0.35 2.12 16 41 H 0.08 0.58 7.77 -51.93 -0.40 0.18 16 42 H 0.09 0.31 7.82 -51.93 -0.41 -0.10 16 43 H 0.08 0.27 7.82 -51.93 -0.41 -0.13 16 44 H 0.07 0.37 8.14 -51.94 -0.42 -0.05 16 45 H 0.08 0.31 7.80 -51.93 -0.41 -0.09 16 46 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.05 0.83 5.97 -51.93 -0.31 0.52 16 48 H 0.09 1.34 7.81 -51.93 -0.41 0.94 16 49 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 50 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 392.97 15.07 5.92 5.92 Total: -1.00 -35.02 392.97 -8.96 -43.98 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -7.83 Total: 10.52 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -1.11 Total: 6.00 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.69 Total: -54.34 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.24 Total: -28.19 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.02 -8.96 -43.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266418189.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.505 kcal (2) G-P(sol) polarization free energy of solvation -35.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds