Wall clock time and date at job start Wed Apr 1 2020 00:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46891 * 109.47397 * 2 1 4 4 C 1.46909 * 110.99874 * 59.18505 * 3 2 1 5 5 C 1.53003 * 109.47056 * 66.04736 * 4 3 2 6 6 N 1.46499 * 109.47096 * 180.02562 * 5 4 3 7 7 C 1.34776 * 119.99775 * 179.97438 * 6 5 4 8 8 O 1.21275 * 120.00212 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99785 * 179.97438 * 7 6 5 10 10 H 1.09008 * 110.66564 * 56.78203 * 9 7 6 11 11 C 1.55005 * 110.90370 * 293.46011 * 9 7 6 12 12 C 1.55820 * 102.78456 * 241.59830 * 11 9 7 13 13 H 1.09003 * 115.38375 * 158.11278 * 12 11 9 14 14 C 1.56255 * 105.42734 * 287.30367 * 12 11 9 15 15 C 1.55005 * 102.58463 * 72.57993 * 14 12 11 16 16 C 1.55814 * 110.75112 * 179.97438 * 9 7 6 17 17 H 1.09001 * 115.38835 * 319.67362 * 16 9 7 18 18 O 1.46532 * 101.24497 * 32.42201 * 12 11 9 19 19 C 1.46895 * 111.00290 * 295.23178 * 3 2 1 20 20 C 1.50698 * 109.47023 * 288.23693 * 19 3 2 21 21 O 1.21292 * 119.99986 * 354.29988 * 20 19 3 22 22 N 1.34773 * 119.99968 * 174.29914 * 20 19 3 23 23 C 1.37099 * 120.00299 * 180.02562 * 22 20 19 24 24 H 1.08005 * 119.99768 * 359.97438 * 23 22 20 25 25 C 1.38950 * 120.00457 * 180.02562 * 23 22 20 26 26 N 1.31414 * 119.99615 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00223 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.46996 * 59.99756 * 27 25 23 29 29 H 1.48497 * 109.47107 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47219 * 300.00177 * 27 25 23 31 31 H 1.08999 * 109.47344 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46965 * 299.98425 * 1 2 3 33 33 H 1.09000 * 109.47227 * 59.98197 * 1 2 3 34 34 H 1.09006 * 109.46741 * 239.99609 * 2 1 3 35 35 H 1.08999 * 109.46889 * 120.00748 * 2 1 3 36 36 H 1.08995 * 109.46774 * 306.04523 * 4 3 2 37 37 H 1.08995 * 109.47037 * 186.04539 * 4 3 2 38 38 H 1.08998 * 109.47445 * 59.99702 * 5 4 3 39 39 H 1.09002 * 109.46913 * 300.00216 * 5 4 3 40 40 H 0.96999 * 120.00151 * 359.97438 * 6 5 4 41 41 H 1.08990 * 110.75124 * 359.92873 * 11 9 7 42 42 H 1.09004 * 110.74851 * 123.27760 * 11 9 7 43 43 H 1.09004 * 110.81104 * 314.34395 * 14 12 11 44 44 H 1.08987 * 110.87802 * 190.85428 * 14 12 11 45 45 H 1.08995 * 110.74745 * 241.71524 * 15 14 12 46 46 H 1.08994 * 110.74688 * 118.54952 * 15 14 12 47 47 H 1.09000 * 109.47069 * 48.23707 * 19 3 2 48 48 H 1.08998 * 109.47474 * 168.23678 * 19 3 2 49 49 H 0.97002 * 120.00048 * 0.02562 * 22 20 19 50 50 H 0.97001 * 119.99273 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5328 2.1154 1.1779 5 6 2.1476 1.5120 2.4424 6 7 1.6616 2.2401 3.6170 7 6 2.0720 1.8813 4.8496 8 8 2.8432 0.9554 4.9864 9 6 1.5725 2.6307 6.0580 10 1 0.4832 2.6149 6.0973 11 6 2.1011 4.0878 6.0626 12 6 2.9445 4.1445 7.3716 13 1 3.7020 4.9275 7.4059 14 6 1.9034 4.1515 8.5368 15 6 1.3758 2.6941 8.5271 16 6 2.1801 2.0386 7.3649 17 1 2.2475 0.9511 7.3981 18 8 3.4478 2.7704 7.4470 19 6 1.6441 2.0761 -1.2405 20 6 2.4641 1.5369 -2.3841 21 8 3.3516 0.7382 -2.1703 22 7 2.2113 1.9420 -3.6444 23 6 2.9569 1.4510 -4.6849 24 1 3.7471 0.7399 -4.4946 25 6 2.6966 1.8690 -5.9842 26 7 1.7353 2.7347 -6.2157 27 14 3.7130 1.2006 -7.4018 28 1 3.5656 -0.2758 -7.4636 29 1 3.2393 1.7986 -8.6758 30 1 5.1418 1.5469 -7.1930 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5136 0.8901 33 1 -0.3634 0.5141 -0.8898 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5140 0.8899 36 1 0.4468 2.0387 1.2296 37 1 1.8197 3.1640 1.0993 38 1 3.2337 1.5886 2.3906 39 1 1.8607 0.4633 2.5210 40 1 1.0445 2.9804 3.5077 41 1 2.7282 4.2738 5.1908 42 1 1.2753 4.7980 6.1042 43 1 1.0969 4.8555 8.3313 44 1 2.3854 4.3814 9.4869 45 1 0.3065 2.6719 8.3169 46 1 1.5920 2.1989 9.4737 47 1 0.5858 1.9107 -1.4425 48 1 1.8305 3.1446 -1.1319 49 1 1.5017 2.5809 -3.8153 50 1 1.5539 3.0268 -7.1228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266418189.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:29 Heat of formation + Delta-G solvation = -123.918792 kcal Electronic energy + Delta-G solvation = -29505.666387 eV Core-core repulsion = 25339.216174 eV Total energy + Delta-G solvation = -4166.450213 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.07430 -40.60382 -39.99484 -38.57308 -36.00063 -35.65790 -33.45910 -33.25555 -32.14668 -31.43145 -30.61563 -30.34701 -27.73261 -25.99004 -25.10662 -23.83344 -22.57636 -21.78785 -21.55498 -20.86236 -20.50773 -19.76309 -18.44707 -17.77760 -17.58456 -17.39078 -17.15913 -16.64003 -16.49130 -16.26126 -15.89627 -15.86873 -15.46978 -15.18485 -14.92929 -14.63369 -14.58230 -14.21607 -13.99908 -13.66239 -13.53495 -13.43065 -13.05905 -13.00219 -12.81879 -12.73491 -12.55265 -12.51127 -12.42669 -12.41702 -12.17101 -12.10052 -12.03550 -11.86236 -11.67445 -11.46989 -11.41226 -10.93048 -10.74259 -10.30265 -10.11950 -9.98060 -9.14887 -8.45021 -5.93094 1.39814 1.41446 1.51984 1.61284 1.98749 2.09880 2.30864 2.84242 2.95745 3.21958 3.42076 3.45754 3.58068 3.73486 3.81963 3.94642 3.99896 4.04926 4.14879 4.15209 4.27545 4.28461 4.31417 4.39377 4.41745 4.48777 4.50112 4.58122 4.60166 4.63697 4.85353 4.87267 4.89261 5.00098 5.01983 5.03394 5.11518 5.12607 5.17213 5.25793 5.33324 5.38711 5.42310 5.67958 5.88663 6.08752 6.19437 6.54791 6.63853 7.15817 7.26234 7.60028 8.17163 8.72088 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028616 B = 0.001738 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.252334 B =16103.215920 C =16313.994127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 N -0.534 5.534 4 C 0.050 3.950 5 C 0.131 3.869 6 N -0.712 5.712 7 C 0.515 3.485 8 O -0.586 6.586 9 C -0.132 4.132 10 H 0.146 0.854 11 C -0.132 4.132 12 C 0.046 3.954 13 H 0.138 0.862 14 C -0.140 4.140 15 C -0.142 4.142 16 C 0.073 3.927 17 H 0.114 0.886 18 O -0.409 6.409 19 C 0.058 3.942 20 C 0.441 3.559 21 O -0.618 6.618 22 N -0.575 5.575 23 C -0.332 4.332 24 H 0.076 0.924 25 C -0.012 4.012 26 N -0.920 5.920 27 Si 0.990 3.010 28 H -0.274 1.274 29 H -0.269 1.269 30 H -0.274 1.274 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.418 0.582 41 H 0.066 0.934 42 H 0.125 0.875 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.103 0.897 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.113 0.887 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.327 8.230 27.992 31.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.078 4.078 3 N -0.258 5.258 4 C -0.078 4.078 5 C 0.006 3.994 6 N -0.365 5.365 7 C 0.303 3.697 8 O -0.466 6.466 9 C -0.153 4.153 10 H 0.164 0.836 11 C -0.169 4.169 12 C -0.011 4.011 13 H 0.156 0.844 14 C -0.178 4.178 15 C -0.180 4.180 16 C 0.015 3.985 17 H 0.132 0.868 18 O -0.329 6.329 19 C -0.073 4.073 20 C 0.228 3.772 21 O -0.504 6.504 22 N -0.213 5.213 23 C -0.462 4.462 24 H 0.094 0.906 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.814 3.186 28 H -0.199 1.199 29 H -0.194 1.194 30 H -0.199 1.199 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.255 0.745 41 H 0.085 0.915 42 H 0.143 0.857 43 H 0.123 0.877 44 H 0.092 0.908 45 H 0.121 0.879 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.131 0.869 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.508 7.036 28.074 30.465 hybrid contribution -0.582 -0.058 -1.382 1.500 sum -10.090 6.978 26.693 29.377 Atomic orbital electron populations 1.22351 0.96261 1.03203 1.02348 1.22117 0.94031 0.89654 1.02016 1.61514 1.60787 1.02492 1.01031 1.22276 0.98989 0.98629 0.87882 1.21044 0.98431 0.95852 0.84066 1.45738 1.49064 1.36678 1.04988 1.21078 0.79987 0.83380 0.85254 1.90718 1.36827 1.32131 1.86882 1.23150 1.03922 0.96496 0.91741 0.83638 1.23313 1.01221 0.93907 0.98492 1.25106 0.95686 0.85188 0.95132 0.84447 1.23327 0.98888 0.97008 0.98545 1.23259 1.00972 0.95847 0.97925 1.24585 0.82882 0.97596 0.93453 0.86827 1.90142 1.29206 1.18937 1.94589 1.21764 0.97749 0.99661 0.88164 1.20885 0.87013 0.84969 0.84342 1.90499 1.36331 1.38799 1.84723 1.41913 1.33087 1.41113 1.05211 1.19587 1.15271 1.24757 0.86575 0.90633 1.25976 0.98104 0.96691 1.00400 1.69659 1.31175 1.32178 1.23051 0.85034 0.78190 0.78375 0.77004 1.19887 1.19369 1.19924 0.91358 0.90332 0.92888 0.93299 0.90577 0.91087 0.88680 0.93600 0.92486 0.74460 0.91488 0.85659 0.87667 0.90792 0.87906 0.90792 0.90484 0.86912 0.76994 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.27 9.27 71.98 0.67 -3.61 16 2 C 0.05 1.55 5.52 86.31 0.48 2.02 16 3 N -0.53 -16.59 4.31 -900.81 -3.88 -20.47 16 4 C 0.05 1.03 4.81 86.30 0.42 1.45 16 5 C 0.13 3.04 5.60 86.38 0.48 3.53 16 6 N -0.71 -11.95 5.56 -463.06 -2.57 -14.53 16 7 C 0.52 11.13 6.99 87.66 0.61 11.74 16 8 O -0.59 -19.46 15.92 -3.01 -0.05 -19.51 16 9 C -0.13 -1.66 2.88 -9.88 -0.03 -1.69 16 10 H 0.15 0.73 7.80 -2.38 -0.02 0.71 16 11 C -0.13 -1.21 6.16 32.26 0.20 -1.01 16 12 C 0.05 0.57 5.71 32.70 0.19 0.75 16 13 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 14 C -0.14 -1.02 6.56 32.41 0.21 -0.80 16 15 C -0.14 -1.28 6.51 32.25 0.21 -1.07 16 16 C 0.07 1.23 4.59 32.54 0.15 1.38 16 17 H 0.11 2.33 7.80 -2.39 -0.02 2.31 16 18 O -0.41 -9.30 11.65 -148.98 -1.74 -11.03 16 19 C 0.06 1.90 5.34 85.56 0.46 2.36 16 20 C 0.44 20.97 7.36 87.66 0.65 21.61 16 21 O -0.62 -34.90 14.70 -3.07 -0.05 -34.95 16 22 N -0.58 -29.43 5.29 -306.99 -1.62 -31.05 16 23 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 24 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 25 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 26 N -0.92 -49.40 13.05 21.66 0.28 -49.12 16 27 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 28 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 29 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 30 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.43 6.26 -2.39 -0.01 1.41 16 33 H 0.05 1.31 6.29 -2.39 -0.02 1.29 16 34 H 0.05 1.96 6.54 -2.38 -0.02 1.94 16 35 H 0.08 2.27 6.51 -2.39 -0.02 2.25 16 36 H 0.07 1.11 5.98 -2.39 -0.01 1.10 16 37 H 0.09 1.68 7.86 -2.39 -0.02 1.66 16 38 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.06 1.48 6.57 -2.39 -0.02 1.47 16 40 H 0.42 3.61 8.47 -92.71 -0.79 2.82 16 41 H 0.07 0.83 7.77 -2.39 -0.02 0.81 16 42 H 0.13 0.21 7.82 -2.38 -0.02 0.19 16 43 H 0.10 0.21 7.82 -2.38 -0.02 0.19 16 44 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.10 0.40 7.80 -2.39 -0.02 0.38 16 46 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.08 2.21 5.97 -2.39 -0.01 2.20 16 48 H 0.11 3.17 7.81 -2.39 -0.02 3.15 16 49 H 0.40 19.04 7.90 -92.71 -0.73 18.31 16 50 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -82.12 392.97 -2.17 -84.29 By element: Atomic # 1 Polarization: 33.24 SS G_CDS: -0.54 Total: 32.70 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: 5.97 Total: 18.29 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -7.79 Total: -115.17 kcal Atomic # 8 Polarization: -63.66 SS G_CDS: -1.83 Total: -65.48 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -82.12 -2.17 -84.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266418189.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.627 kcal (2) G-P(sol) polarization free energy of solvation -82.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds