Wall clock time and date at job start Tue Mar 31 2020 22:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.47295 * 2 1 4 4 N 1.46497 * 109.47017 * 120.00099 * 2 1 3 5 5 C 1.36939 * 120.00108 * 302.23701 * 4 2 1 6 6 H 1.08000 * 119.99552 * 321.91011 * 5 4 2 7 7 C 1.38810 * 119.99744 * 141.91852 * 5 4 2 8 8 N 1.31614 * 120.00305 * 338.44584 * 7 5 4 9 9 Si 1.86809 * 119.99657 * 158.45508 * 7 5 4 10 10 H 1.48501 * 109.47156 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46998 * 119.99628 * 9 7 5 12 12 H 1.48503 * 109.46674 * 239.99591 * 9 7 5 13 13 C 1.46502 * 120.00087 * 122.23733 * 4 2 1 14 14 C 1.53001 * 109.47248 * 89.99602 * 13 4 2 15 15 C 1.52993 * 109.47194 * 180.02562 * 14 13 4 16 16 N 1.46505 * 109.47052 * 180.02562 * 15 14 13 17 17 C 1.34779 * 120.00095 * 180.02562 * 16 15 14 18 18 O 1.21283 * 119.99934 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00063 * 179.97438 * 17 16 15 20 20 H 1.09000 * 109.47269 * 59.99953 * 19 17 16 21 21 C 1.53004 * 109.47085 * 299.99807 * 19 17 16 22 22 N 1.46502 * 109.47075 * 179.97438 * 19 17 16 23 23 C 1.33867 * 122.76345 * 239.99730 * 22 19 17 24 24 O 1.21236 * 125.39702 * 359.97438 * 23 22 19 25 25 C 1.51317 * 109.20814 * 180.02562 * 23 22 19 26 26 C 1.54226 * 103.69381 * 359.92301 * 25 23 22 27 27 C 1.33875 * 122.76157 * 60.00478 * 22 19 17 28 28 O 1.21230 * 125.39624 * 0.02562 * 27 22 19 29 29 H 1.08994 * 109.46492 * 305.40100 * 1 2 3 30 30 H 1.08994 * 109.47042 * 65.40397 * 1 2 3 31 31 H 1.08997 * 109.46947 * 185.40663 * 1 2 3 32 32 H 1.09000 * 109.46798 * 239.99909 * 2 1 3 33 33 H 1.08993 * 109.47564 * 180.44448 * 3 2 1 34 34 H 1.09005 * 109.46986 * 300.44286 * 3 2 1 35 35 H 1.08998 * 109.47310 * 60.44043 * 3 2 1 36 36 H 0.97008 * 120.00042 * 180.02562 * 8 7 5 37 37 H 1.09004 * 109.47184 * 330.00210 * 13 4 2 38 38 H 1.08997 * 109.47337 * 209.99617 * 13 4 2 39 39 H 1.09000 * 109.47023 * 60.00147 * 14 13 4 40 40 H 1.08996 * 109.47322 * 300.00649 * 14 13 4 41 41 H 1.09004 * 109.47322 * 60.00557 * 15 14 13 42 42 H 1.08997 * 109.47253 * 299.99930 * 15 14 13 43 43 H 0.96997 * 120.00149 * 359.97438 * 16 15 14 44 44 H 1.08991 * 109.47321 * 300.00071 * 21 19 17 45 45 H 1.09000 * 109.46530 * 60.00533 * 21 19 17 46 46 H 1.08996 * 109.46707 * 180.02562 * 21 19 17 47 47 H 1.09002 * 110.60714 * 118.51898 * 25 23 22 48 48 H 1.09002 * 110.60752 * 241.32630 * 25 23 22 49 49 H 1.09000 * 110.60562 * 118.59412 * 26 25 23 50 50 H 1.08995 * 110.60421 * 241.56211 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6502 -0.2501 2.4394 6 1 1.5676 0.8089 2.6344 7 6 1.3834 -1.1648 3.4488 8 7 1.0660 -2.4056 3.1457 9 14 1.4746 -0.6344 5.2377 10 1 1.8495 0.8006 5.3101 11 1 0.1512 -0.8338 5.8812 12 1 2.4961 -1.4488 5.9439 13 6 2.9006 -1.8525 1.0623 14 6 4.3581 -1.3873 1.0481 15 6 5.2794 -2.6006 0.9077 16 7 6.6751 -2.1552 0.8948 17 6 7.6694 -3.0575 0.7783 18 8 7.4088 -4.2383 0.6838 19 6 9.1050 -2.5993 0.7645 20 1 9.3293 -2.0789 1.6956 21 6 9.3262 -1.6511 -0.4158 22 7 9.9872 -3.7611 0.6301 23 6 10.9087 -4.0809 1.5469 24 8 11.1226 -3.4682 2.5710 25 6 11.6421 -5.3274 1.1020 26 6 10.9784 -5.6804 -0.2447 27 6 9.9382 -4.5904 -0.4197 28 8 9.1819 -4.4871 -1.3615 29 1 -0.3632 0.5953 0.8376 30 1 -0.3633 0.4277 -0.9344 31 1 -0.3633 -1.0231 0.0968 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0080 34 1 1.6703 1.9586 -0.8860 35 1 1.6833 1.9540 0.8939 36 1 0.8792 -3.0447 3.8512 37 1 2.6766 -2.3736 0.1314 38 1 2.7429 -2.5274 1.9035 39 1 4.5823 -0.8663 1.9790 40 1 4.5160 -0.7124 0.2070 41 1 5.0553 -3.1213 -0.0233 42 1 5.1218 -3.2758 1.7487 43 1 6.8835 -1.2108 0.9693 44 1 9.1019 -2.1714 -1.3469 45 1 8.6699 -0.7867 -0.3153 46 1 10.3646 -1.3200 -0.4260 47 1 12.7032 -5.1196 0.9639 48 1 11.5008 -6.1333 1.8222 49 1 11.7092 -5.6481 -1.0527 50 1 10.5046 -6.6606 -0.1935 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267503290.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:34 Heat of formation + Delta-G solvation = -86.940666 kcal Electronic energy + Delta-G solvation = -30265.031459 eV Core-core repulsion = 26100.184738 eV Total energy + Delta-G solvation = -4164.846721 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.30577 -39.50996 -38.73216 -36.79525 -36.07237 -35.04678 -34.60743 -32.51037 -31.69518 -30.49159 -28.70304 -26.46559 -26.18261 -25.71389 -24.66806 -23.14682 -22.66403 -20.99501 -20.85506 -19.53937 -19.30143 -17.83391 -17.45826 -16.92670 -16.36851 -16.16300 -15.62955 -15.43749 -14.97786 -14.78283 -14.45123 -14.29850 -14.29095 -14.13510 -13.95627 -13.74337 -13.37838 -13.33446 -12.84572 -12.73805 -12.62676 -12.44354 -12.17869 -11.73767 -11.68125 -11.50586 -11.44112 -11.30557 -10.97580 -10.80102 -10.76451 -10.64220 -10.49408 -10.38998 -10.21015 -10.18559 -9.93925 -9.63963 -9.57640 -9.45296 -8.90548 -8.46242 -6.53752 -5.77018 -3.34991 1.28936 2.05331 2.45300 2.58445 3.23301 3.35176 3.44666 3.45933 3.74546 3.88285 4.07239 4.43008 4.47396 4.50958 4.59488 4.67912 4.92363 5.04466 5.19997 5.21863 5.23303 5.28904 5.37389 5.43013 5.65368 5.72675 5.78363 5.95440 6.02658 6.18774 6.31317 6.38838 6.39827 6.44546 6.54131 6.66823 6.72573 6.73181 6.80805 6.81624 7.05881 7.11400 7.21163 7.35767 7.46600 7.58334 7.67695 7.86000 8.20244 8.55130 9.21788 9.84381 10.43707 11.22938 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015165 B = 0.002491 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.971132 B =11238.951192 C =12090.951528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.162 3.838 3 C -0.153 4.153 4 N -0.579 5.579 5 C -0.252 4.252 6 H 0.060 0.940 7 C 0.013 3.987 8 N -0.885 5.885 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.289 1.289 13 C 0.153 3.847 14 C -0.145 4.145 15 C 0.122 3.878 16 N -0.718 5.718 17 C 0.505 3.495 18 O -0.528 6.528 19 C 0.107 3.893 20 H 0.129 0.871 21 C -0.162 4.162 22 N -0.559 5.559 23 C 0.529 3.471 24 O -0.486 6.486 25 C -0.154 4.154 26 C -0.154 4.154 27 C 0.531 3.469 28 O -0.463 6.463 29 H 0.053 0.947 30 H 0.028 0.972 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.042 0.958 34 H 0.035 0.965 35 H 0.053 0.947 36 H 0.253 0.747 37 H 0.025 0.975 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.399 0.601 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.119 0.881 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.698 -2.475 -7.896 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.055 3.945 3 C -0.212 4.212 4 N -0.299 5.299 5 C -0.382 4.382 6 H 0.077 0.923 7 C -0.188 4.188 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.215 1.215 13 C 0.025 3.975 14 C -0.186 4.186 15 C -0.001 4.001 16 N -0.369 5.369 17 C 0.288 3.712 18 O -0.404 6.404 19 C 0.001 3.999 20 H 0.147 0.853 21 C -0.220 4.220 22 N -0.302 5.302 23 C 0.318 3.682 24 O -0.358 6.358 25 C -0.194 4.194 26 C -0.194 4.194 27 C 0.319 3.681 28 O -0.333 6.333 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.043 0.957 38 H 0.112 0.888 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.234 0.766 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.091 0.909 47 H 0.139 0.861 48 H 0.140 0.860 49 H 0.137 0.863 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 21.088 -3.076 -7.835 22.706 hybrid contribution 0.038 0.731 1.186 1.394 sum 21.127 -2.345 -6.649 22.272 Atomic orbital electron populations 1.22058 0.97875 1.01576 0.98933 1.20415 0.92469 0.91777 0.89825 1.22177 1.00047 0.98998 1.00025 1.43849 1.51742 1.33252 1.01091 1.18924 1.41421 0.91277 0.86614 0.92281 1.25176 0.98539 0.96425 0.98617 1.70013 1.47001 1.04198 1.31516 0.86429 0.77368 0.78295 0.85888 1.20153 1.21727 1.21525 1.20771 0.84917 0.90836 1.00931 1.22505 0.98744 0.95831 1.01496 1.21514 0.78105 0.98499 1.01970 1.46058 1.06996 1.09950 1.73921 1.20378 0.86891 0.86800 0.77095 1.90720 1.84157 1.16747 1.48737 1.21271 0.88485 0.86691 1.03471 0.85305 1.22119 1.03435 0.98725 0.97690 1.46488 1.33960 1.27018 1.22747 1.20867 0.79135 0.86133 0.82045 1.90790 1.65840 1.55947 1.23223 1.22452 1.02003 0.96744 0.98208 1.22517 0.98173 0.99936 0.98764 1.20786 0.83764 0.82535 0.80979 1.90773 1.38782 1.72293 1.31430 0.92779 0.95288 0.93007 0.93726 0.93916 0.94602 0.92780 0.93679 0.95696 0.88829 0.91614 0.93168 0.91826 0.91478 0.76649 0.90112 0.89851 0.90948 0.86121 0.86035 0.86258 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.04 37.16 0.34 -2.61 16 2 C 0.16 3.32 3.36 -67.93 -0.23 3.09 16 3 C -0.15 -2.77 9.20 37.16 0.34 -2.43 16 4 N -0.58 -13.62 2.36 -165.66 -0.39 -14.01 16 5 C -0.25 -6.55 8.23 -15.06 -0.12 -6.68 16 6 H 0.06 1.56 6.95 -52.49 -0.36 1.19 16 7 C 0.01 0.34 4.94 -17.43 -0.09 0.26 16 8 N -0.89 -24.93 11.52 55.49 0.64 -24.29 16 9 Si 0.89 21.24 29.61 -169.99 -5.03 16.21 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.15 3.39 5.27 -4.04 -0.02 3.37 16 14 C -0.15 -2.63 5.65 -26.73 -0.15 -2.78 16 15 C 0.12 2.06 5.67 -4.04 -0.02 2.04 16 16 N -0.72 -10.06 5.45 -60.29 -0.33 -10.39 16 17 C 0.51 7.57 6.79 -10.99 -0.07 7.50 16 18 O -0.53 -9.95 14.80 -10.73 -0.16 -10.11 16 19 C 0.11 1.21 3.12 -69.08 -0.22 0.99 16 20 H 0.13 1.33 7.41 -51.93 -0.38 0.95 16 21 C -0.16 -1.44 9.07 37.16 0.34 -1.10 16 22 N -0.56 -6.12 2.28 -109.34 -0.25 -6.37 16 23 C 0.53 5.20 8.08 -11.09 -0.09 5.11 16 24 O -0.49 -6.27 17.23 5.59 0.10 -6.17 16 25 C -0.15 -0.76 7.02 -26.94 -0.19 -0.95 16 26 C -0.15 -0.85 7.05 -26.76 -0.19 -1.03 16 27 C 0.53 5.82 6.71 -10.91 -0.07 5.75 16 28 O -0.46 -6.83 15.12 -10.68 -0.16 -6.99 16 29 H 0.05 1.16 7.80 -51.93 -0.40 0.75 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.04 0.87 7.78 -51.93 -0.40 0.46 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.05 1.04 7.06 -51.93 -0.37 0.68 16 36 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.02 0.54 7.90 -51.93 -0.41 0.13 16 38 H 0.09 2.40 5.56 -51.93 -0.29 2.11 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.40 4.44 7.89 -40.82 -0.32 4.12 16 44 H 0.08 0.88 6.65 -51.93 -0.35 0.53 16 45 H 0.08 0.61 7.56 -51.93 -0.39 0.21 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.12 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 405.61 15.07 6.11 6.11 Total: -1.00 -34.68 405.61 -8.24 -42.92 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -8.31 Total: 2.57 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -0.45 Total: 10.52 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.33 Total: -55.06 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.22 Total: -23.28 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.68 -8.24 -42.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267503290.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.019 kcal (2) G-P(sol) polarization free energy of solvation -34.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds