Wall clock time and date at job start Tue Mar 31 2020 22:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.47295 * 2 1 4 4 N 1.46497 * 109.47017 * 120.00099 * 2 1 3 5 5 C 1.36939 * 120.00108 * 302.23701 * 4 2 1 6 6 H 1.08000 * 119.99552 * 321.91011 * 5 4 2 7 7 C 1.38810 * 119.99744 * 141.91852 * 5 4 2 8 8 N 1.31614 * 120.00305 * 338.44584 * 7 5 4 9 9 Si 1.86809 * 119.99657 * 158.45508 * 7 5 4 10 10 H 1.48501 * 109.47156 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46998 * 119.99628 * 9 7 5 12 12 H 1.48503 * 109.46674 * 239.99591 * 9 7 5 13 13 C 1.46502 * 120.00087 * 122.23733 * 4 2 1 14 14 C 1.53001 * 109.47248 * 89.99602 * 13 4 2 15 15 C 1.52993 * 109.47194 * 180.02562 * 14 13 4 16 16 N 1.46505 * 109.47052 * 180.02562 * 15 14 13 17 17 C 1.34779 * 120.00095 * 180.02562 * 16 15 14 18 18 O 1.21283 * 119.99934 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00063 * 179.97438 * 17 16 15 20 20 H 1.09000 * 109.47269 * 59.99953 * 19 17 16 21 21 C 1.53004 * 109.47085 * 299.99807 * 19 17 16 22 22 N 1.46502 * 109.47075 * 179.97438 * 19 17 16 23 23 C 1.33867 * 122.76345 * 239.99730 * 22 19 17 24 24 O 1.21236 * 125.39702 * 359.97438 * 23 22 19 25 25 C 1.51317 * 109.20814 * 180.02562 * 23 22 19 26 26 C 1.54226 * 103.69381 * 359.92301 * 25 23 22 27 27 C 1.33875 * 122.76157 * 60.00478 * 22 19 17 28 28 O 1.21230 * 125.39624 * 0.02562 * 27 22 19 29 29 H 1.08994 * 109.46492 * 305.40100 * 1 2 3 30 30 H 1.08994 * 109.47042 * 65.40397 * 1 2 3 31 31 H 1.08997 * 109.46947 * 185.40663 * 1 2 3 32 32 H 1.09000 * 109.46798 * 239.99909 * 2 1 3 33 33 H 1.08993 * 109.47564 * 180.44448 * 3 2 1 34 34 H 1.09005 * 109.46986 * 300.44286 * 3 2 1 35 35 H 1.08998 * 109.47310 * 60.44043 * 3 2 1 36 36 H 0.97008 * 120.00042 * 180.02562 * 8 7 5 37 37 H 1.09004 * 109.47184 * 330.00210 * 13 4 2 38 38 H 1.08997 * 109.47337 * 209.99617 * 13 4 2 39 39 H 1.09000 * 109.47023 * 60.00147 * 14 13 4 40 40 H 1.08996 * 109.47322 * 300.00649 * 14 13 4 41 41 H 1.09004 * 109.47322 * 60.00557 * 15 14 13 42 42 H 1.08997 * 109.47253 * 299.99930 * 15 14 13 43 43 H 0.96997 * 120.00149 * 359.97438 * 16 15 14 44 44 H 1.08991 * 109.47321 * 300.00071 * 21 19 17 45 45 H 1.09000 * 109.46530 * 60.00533 * 21 19 17 46 46 H 1.08996 * 109.46707 * 180.02562 * 21 19 17 47 47 H 1.09002 * 110.60714 * 118.51898 * 25 23 22 48 48 H 1.09002 * 110.60752 * 241.32630 * 25 23 22 49 49 H 1.09000 * 110.60562 * 118.59412 * 26 25 23 50 50 H 1.08995 * 110.60421 * 241.56211 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6502 -0.2501 2.4394 6 1 1.5676 0.8089 2.6344 7 6 1.3834 -1.1648 3.4488 8 7 1.0660 -2.4056 3.1457 9 14 1.4746 -0.6344 5.2377 10 1 1.8495 0.8006 5.3101 11 1 0.1512 -0.8338 5.8812 12 1 2.4961 -1.4488 5.9439 13 6 2.9006 -1.8525 1.0623 14 6 4.3581 -1.3873 1.0481 15 6 5.2794 -2.6006 0.9077 16 7 6.6751 -2.1552 0.8948 17 6 7.6694 -3.0575 0.7783 18 8 7.4088 -4.2383 0.6838 19 6 9.1050 -2.5993 0.7645 20 1 9.3293 -2.0789 1.6956 21 6 9.3262 -1.6511 -0.4158 22 7 9.9872 -3.7611 0.6301 23 6 10.9087 -4.0809 1.5469 24 8 11.1226 -3.4682 2.5710 25 6 11.6421 -5.3274 1.1020 26 6 10.9784 -5.6804 -0.2447 27 6 9.9382 -4.5904 -0.4197 28 8 9.1819 -4.4871 -1.3615 29 1 -0.3632 0.5953 0.8376 30 1 -0.3633 0.4277 -0.9344 31 1 -0.3633 -1.0231 0.0968 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0080 34 1 1.6703 1.9586 -0.8860 35 1 1.6833 1.9540 0.8939 36 1 0.8792 -3.0447 3.8512 37 1 2.6766 -2.3736 0.1314 38 1 2.7429 -2.5274 1.9035 39 1 4.5823 -0.8663 1.9790 40 1 4.5160 -0.7124 0.2070 41 1 5.0553 -3.1213 -0.0233 42 1 5.1218 -3.2758 1.7487 43 1 6.8835 -1.2108 0.9693 44 1 9.1019 -2.1714 -1.3469 45 1 8.6699 -0.7867 -0.3153 46 1 10.3646 -1.3200 -0.4260 47 1 12.7032 -5.1196 0.9639 48 1 11.5008 -6.1333 1.8222 49 1 11.7092 -5.6481 -1.0527 50 1 10.5046 -6.6606 -0.1935 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267503290.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:33 Heat of formation + Delta-G solvation = -109.580414 kcal Electronic energy + Delta-G solvation = -30266.013192 eV Core-core repulsion = 26100.184738 eV Total energy + Delta-G solvation = -4165.828454 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.09657 -40.68635 -39.60992 -38.52623 -36.96328 -36.44536 -35.38169 -34.28634 -33.23157 -31.42790 -30.31382 -27.73873 -27.28945 -27.08132 -25.89820 -24.65803 -23.36646 -22.45831 -22.03042 -21.30605 -20.28621 -18.77704 -18.37722 -18.12465 -17.69617 -17.17476 -16.99712 -16.71666 -16.60338 -15.98764 -15.79970 -15.52905 -15.26450 -15.19624 -14.94909 -14.86433 -14.55000 -14.53442 -14.10333 -13.91044 -13.63140 -13.37885 -13.28180 -13.24383 -13.17821 -12.99072 -12.86489 -12.75640 -12.50727 -12.34602 -12.13994 -12.10710 -11.92798 -11.72022 -11.57626 -11.49005 -11.33895 -11.23329 -11.02787 -10.69122 -10.48232 -10.22715 -8.49441 -7.77640 -5.39259 0.53129 1.26905 1.39923 1.42690 1.47637 1.55589 1.70558 2.14215 2.52184 3.17787 3.26704 3.28782 3.49127 3.60006 3.63355 3.74089 3.84001 4.11297 4.13739 4.18302 4.27696 4.35748 4.48281 4.57689 4.62872 4.67426 4.70499 4.74997 4.79400 4.89387 4.91146 4.92149 4.97082 5.01244 5.06850 5.15440 5.20519 5.22484 5.32839 5.46346 5.61994 5.68301 5.74915 5.79254 5.87477 6.32072 6.35508 6.53166 6.74540 7.04487 7.23229 7.93586 8.46504 9.17925 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015165 B = 0.002491 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.971132 B =11238.951192 C =12090.951528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.152 3.848 3 C -0.141 4.141 4 N -0.593 5.593 5 C -0.243 4.243 6 H 0.057 0.943 7 C -0.037 4.037 8 N -0.918 5.918 9 Si 0.945 3.055 10 H -0.265 1.265 11 H -0.296 1.296 12 H -0.295 1.295 13 C 0.152 3.848 14 C -0.121 4.121 15 C 0.136 3.864 16 N -0.708 5.708 17 C 0.500 3.500 18 O -0.571 6.571 19 C 0.106 3.894 20 H 0.139 0.861 21 C -0.153 4.153 22 N -0.567 5.567 23 C 0.522 3.478 24 O -0.523 6.523 25 C -0.139 4.139 26 C -0.141 4.141 27 C 0.518 3.482 28 O -0.511 6.511 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.022 0.978 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.037 0.963 36 H 0.247 0.753 37 H 0.024 0.976 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.042 0.958 43 H 0.416 0.584 44 H 0.060 0.940 45 H 0.100 0.900 46 H 0.093 0.907 47 H 0.157 0.843 48 H 0.139 0.861 49 H 0.153 0.847 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.285 -1.389 -8.859 25.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.046 3.954 3 C -0.200 4.200 4 N -0.314 5.314 5 C -0.374 4.374 6 H 0.074 0.926 7 C -0.234 4.234 8 N -0.562 5.562 9 Si 0.774 3.226 10 H -0.190 1.190 11 H -0.223 1.223 12 H -0.222 1.222 13 C 0.025 3.975 14 C -0.161 4.161 15 C 0.012 3.988 16 N -0.360 5.360 17 C 0.285 3.715 18 O -0.450 6.450 19 C 0.000 4.000 20 H 0.157 0.843 21 C -0.210 4.210 22 N -0.310 5.310 23 C 0.314 3.686 24 O -0.398 6.398 25 C -0.178 4.178 26 C -0.180 4.180 27 C 0.310 3.690 28 O -0.384 6.384 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.253 0.747 44 H 0.079 0.921 45 H 0.119 0.881 46 H 0.111 0.889 47 H 0.175 0.825 48 H 0.157 0.843 49 H 0.171 0.829 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 23.710 -1.943 -8.806 25.367 hybrid contribution -0.804 0.406 1.413 1.675 sum 22.906 -1.538 -7.394 24.119 Atomic orbital electron populations 1.21974 0.97889 0.99653 1.00104 1.20671 0.92541 0.93217 0.88982 1.22022 1.00402 0.96918 1.00680 1.44077 1.52425 1.33428 1.01471 1.19069 1.39613 0.91038 0.87705 0.92565 1.25777 0.99357 0.96597 1.01701 1.70144 1.49020 1.05113 1.31940 0.85558 0.76627 0.78254 0.82120 1.18972 1.22297 1.22183 1.20655 0.87262 0.90261 0.99309 1.22132 0.96122 0.96087 1.01764 1.21132 0.79672 0.97464 1.00541 1.45861 1.05744 1.10911 1.73490 1.21105 0.88469 0.86185 0.75730 1.90690 1.85072 1.18648 1.50625 1.21325 0.86010 0.87688 1.05020 0.84329 1.22094 1.05193 0.98339 0.95417 1.46794 1.33926 1.27009 1.23300 1.21775 0.78712 0.87045 0.81088 1.90769 1.66925 1.57453 1.24619 1.22593 1.03097 0.94314 0.97776 1.22650 0.97084 0.98048 1.00211 1.21819 0.83987 0.83269 0.79966 1.90742 1.40979 1.73552 1.33144 0.94512 0.91659 0.95887 0.92462 0.93256 0.91558 0.94400 0.94387 0.95739 0.92447 0.92568 0.91091 0.92552 0.93958 0.74701 0.92128 0.88102 0.88858 0.82532 0.84271 0.82895 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.44 9.04 71.99 0.65 -4.79 16 2 C 0.15 6.00 3.36 44.99 0.15 6.15 16 3 C -0.14 -4.74 9.20 71.98 0.66 -4.07 16 4 N -0.59 -27.91 2.36 -678.02 -1.60 -29.51 16 5 C -0.24 -12.71 8.23 84.03 0.69 -12.02 16 6 H 0.06 2.95 6.95 -2.91 -0.02 2.93 16 7 C -0.04 -2.04 4.94 84.86 0.42 -1.62 16 8 N -0.92 -53.54 11.52 21.65 0.25 -53.29 16 9 Si 0.95 44.48 29.61 68.60 2.03 46.51 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 12 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 13 C 0.15 6.89 5.27 86.38 0.46 7.35 16 14 C -0.12 -4.34 5.65 30.59 0.17 -4.17 16 15 C 0.14 4.69 5.67 86.38 0.49 5.18 16 16 N -0.71 -19.73 5.45 -463.06 -2.52 -22.25 16 17 C 0.50 15.16 6.79 87.66 0.60 15.76 16 18 O -0.57 -22.29 14.80 12.53 0.19 -22.11 16 19 C 0.11 2.34 3.12 44.24 0.14 2.48 16 20 H 0.14 2.76 7.41 -2.39 -0.02 2.74 16 21 C -0.15 -2.52 9.07 71.98 0.65 -1.87 16 22 N -0.57 -11.94 2.28 -737.67 -1.68 -13.63 16 23 C 0.52 9.44 8.08 88.00 0.71 10.15 16 24 O -0.52 -13.01 17.23 -2.90 -0.05 -13.06 16 25 C -0.14 -0.89 7.02 30.46 0.21 -0.67 16 26 C -0.14 -1.13 7.05 30.58 0.22 -0.91 16 27 C 0.52 10.93 6.71 88.11 0.59 11.52 16 28 O -0.51 -15.26 15.12 12.69 0.19 -15.07 16 29 H 0.04 1.55 7.80 -2.39 -0.02 1.53 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 2.12 7.78 -2.39 -0.02 2.10 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.04 1.38 7.06 -2.39 -0.02 1.36 16 36 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 37 H 0.02 1.08 7.90 -2.39 -0.02 1.06 16 38 H 0.06 3.07 5.56 -2.39 -0.01 3.06 16 39 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.42 8.73 7.89 -92.71 -0.73 8.00 16 44 H 0.06 1.29 6.65 -2.39 -0.02 1.27 16 45 H 0.10 1.26 7.56 -2.39 -0.02 1.24 16 46 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.16 -0.04 8.14 -2.39 -0.02 -0.06 16 48 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.15 0.24 8.14 -2.39 -0.02 0.23 16 50 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -79.93 405.61 3.82 -76.10 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.21 Total: 17.84 kcal Atomic # 6 Polarization: 21.64 SS G_CDS: 6.81 Total: 28.45 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -5.55 Total: -118.67 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: 0.33 Total: -50.23 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -79.93 3.82 -76.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267503290.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.478 kcal (2) G-P(sol) polarization free energy of solvation -79.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds