Wall clock time and date at job start Tue Mar 31 2020 22:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00204 * 2 1 4 4 H 1.09002 * 109.46880 * 329.99601 * 3 2 1 5 5 C 1.52997 * 109.47503 * 89.99725 * 3 2 1 6 6 C 1.50708 * 109.47227 * 210.00045 * 3 2 1 7 7 O 1.21280 * 119.99888 * 354.99553 * 6 3 2 8 8 N 1.34777 * 119.99928 * 174.99661 * 6 3 2 9 9 C 1.46879 * 120.46638 * 359.72053 * 8 6 3 10 10 C 1.52899 * 108.99691 * 235.51245 * 9 8 6 11 11 C 1.52679 * 109.16778 * 307.79399 * 10 9 8 12 12 C 1.53480 * 113.61515 * 188.98889 * 11 10 9 13 13 N 1.48039 * 86.05491 * 137.83555 * 12 11 10 14 14 C 1.46902 * 111.00101 * 222.70291 * 13 12 11 15 15 C 1.50702 * 109.47033 * 289.44109 * 14 13 12 16 16 O 1.21291 * 120.00194 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99916 * 179.97438 * 15 14 13 18 18 C 1.37092 * 119.99961 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00157 * 359.97438 * 18 17 15 20 20 C 1.38961 * 119.99850 * 179.97438 * 18 17 15 21 21 N 1.31409 * 119.99810 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99918 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47064 * 59.99737 * 22 20 18 24 24 H 1.48500 * 109.47028 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46917 * 300.00166 * 22 20 18 26 26 C 1.48048 * 90.83639 * 335.62960 * 13 12 11 27 27 C 1.52670 * 113.17560 * 57.48086 * 11 10 9 28 28 C 1.46881 * 120.46425 * 179.97438 * 8 6 3 29 29 H 1.09000 * 109.46567 * 60.00876 * 1 2 3 30 30 H 1.09001 * 109.47118 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47054 * 300.00226 * 1 2 3 32 32 H 1.09002 * 109.47153 * 60.00043 * 5 3 2 33 33 H 1.09001 * 109.46832 * 300.00234 * 5 3 2 34 34 H 1.09004 * 109.47261 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.59239 * 355.33328 * 9 8 6 36 36 H 1.09000 * 109.59115 * 115.77251 * 9 8 6 37 37 H 1.08996 * 109.60175 * 187.82363 * 10 9 8 38 38 H 1.09004 * 109.45904 * 67.67327 * 10 9 8 39 39 H 1.09003 * 113.77456 * 252.12543 * 12 11 10 40 40 H 1.09002 * 113.77872 * 23.54704 * 12 11 10 41 41 H 1.08992 * 109.46945 * 49.44355 * 14 13 12 42 42 H 1.08999 * 109.46585 * 169.44496 * 14 13 12 43 43 H 0.97003 * 120.00212 * 359.97438 * 17 15 14 44 44 H 0.97002 * 119.99279 * 179.97438 * 21 20 18 45 45 H 1.09004 * 113.77602 * 270.08477 * 26 13 12 46 46 H 1.08999 * 113.88543 * 138.66208 * 26 13 12 47 47 H 1.09002 * 109.53253 * 182.50489 * 27 11 10 48 48 H 1.08998 * 109.59311 * 62.32675 * 27 11 10 49 49 H 1.09004 * 109.58777 * 244.23802 * 28 8 6 50 50 H 1.09006 * 109.58763 * 4.66585 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 3.3387 1.2638 -0.7104 7 8 3.7898 0.2044 -1.0914 8 7 4.0255 2.4039 -0.9225 9 6 3.4860 3.6932 -0.4709 10 6 3.4136 4.6475 -1.6633 11 6 4.7751 4.6926 -2.3527 12 6 4.8833 5.7811 -3.4294 13 7 6.2319 6.0471 -2.8797 14 6 6.4830 7.4909 -2.7765 15 6 6.6441 8.0726 -4.1574 16 8 6.5577 7.3552 -5.1316 17 7 6.8831 9.3902 -4.3098 18 6 7.0291 9.9195 -5.5660 19 1 6.9530 9.2806 -6.4334 20 6 7.2750 11.2781 -5.7232 21 7 7.3671 12.0555 -4.6678 22 14 7.4747 11.9992 -7.4348 23 1 6.2347 11.7660 -8.2179 24 1 7.7279 13.4587 -7.3305 25 1 8.6208 11.3459 -8.1165 26 6 5.8331 5.4831 -1.5702 27 6 5.2584 3.3214 -2.8186 28 6 5.3214 2.3752 -1.6133 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.8829 1.0775 1.9563 33 1 1.2568 1.8015 1.9562 34 1 2.6607 2.7674 1.4424 35 1 2.4869 3.5477 -0.0601 36 1 4.1394 4.1156 0.2925 37 1 3.1472 5.6461 -1.3169 38 1 2.6604 4.2929 -2.3670 39 1 4.8925 5.3925 -4.4478 40 1 4.1828 6.6051 -3.2934 41 1 5.6423 7.9709 -2.2758 42 1 7.3935 7.6611 -2.2021 43 1 6.9511 9.9641 -3.5308 44 1 7.5391 13.0038 -4.7776 45 1 5.4137 6.2189 -0.8841 46 1 6.5967 4.8573 -1.1083 47 1 6.2505 3.4154 -3.2603 48 1 4.5660 2.9223 -3.5598 49 1 6.1063 2.7030 -0.9316 50 1 5.5311 1.3614 -1.9548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270832982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:53 Heat of formation + Delta-G solvation = -70.067343 kcal Electronic energy + Delta-G solvation = -30200.830896 eV Core-core repulsion = 26036.715857 eV Total energy + Delta-G solvation = -4164.115039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.23235 -40.04439 -38.18965 -37.74240 -36.36905 -33.94620 -33.07125 -31.96876 -31.23998 -30.87754 -28.53205 -27.24891 -26.33949 -25.39973 -24.66857 -23.96280 -23.05571 -21.72219 -20.10454 -19.18421 -18.34554 -17.89462 -17.51432 -17.01012 -16.29251 -16.12802 -15.68878 -15.63121 -15.29837 -14.97766 -14.92557 -14.69377 -14.30272 -14.17206 -13.88630 -13.73608 -13.53477 -13.30633 -13.09471 -12.81597 -12.75691 -12.36948 -12.33581 -12.22843 -12.06158 -11.83201 -11.58704 -11.51026 -11.43386 -11.28786 -11.01772 -10.75146 -10.48716 -10.45812 -10.33716 -10.26690 -10.16531 -9.73432 -9.50652 -8.88653 -8.61885 -8.21474 -7.97634 -6.43146 -3.83875 2.33475 2.44160 3.18780 3.24469 3.28954 3.46504 3.88259 3.98892 4.07358 4.17272 4.24531 4.36811 4.49081 4.54044 4.59128 4.79917 4.85442 4.90036 4.94362 5.00735 5.04553 5.12653 5.15538 5.20955 5.23763 5.26979 5.30788 5.39369 5.45498 5.50125 5.60616 5.64338 5.69085 5.72054 5.79209 5.82998 5.96701 6.04724 6.09403 6.24403 6.30408 6.37922 6.61803 6.64425 7.09861 7.23480 7.53522 7.91745 8.04266 8.60172 9.16633 9.52876 10.04823 10.74556 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031076 B = 0.001921 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.793977 B =14575.429321 C =14660.061960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.070 3.930 4 H 0.086 0.914 5 C -0.179 4.179 6 C 0.516 3.484 7 O -0.522 6.522 8 N -0.606 5.606 9 C 0.102 3.898 10 C -0.124 4.124 11 C -0.089 4.089 12 C 0.032 3.968 13 N -0.450 5.450 14 C 0.011 3.989 15 C 0.443 3.557 16 O -0.579 6.579 17 N -0.565 5.565 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.006 3.994 27 C -0.104 4.104 28 C 0.114 3.886 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.089 0.911 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.955 -15.928 15.459 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.008 3.992 4 H 0.104 0.896 5 C -0.236 4.236 6 C 0.303 3.697 7 O -0.397 6.397 8 N -0.342 5.342 9 C -0.020 4.020 10 C -0.162 4.162 11 C -0.090 4.090 12 C -0.097 4.097 13 N -0.172 5.172 14 C -0.121 4.121 15 C 0.229 3.771 16 O -0.463 6.463 17 N -0.202 5.202 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.123 4.123 27 C -0.142 4.142 28 C -0.008 4.008 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.107 0.893 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.110 0.890 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.017 -17.181 14.261 25.357 hybrid contribution -0.734 1.832 0.130 1.978 sum -12.751 -15.348 14.391 24.602 Atomic orbital electron populations 1.22894 0.80537 1.03340 1.00074 1.88051 1.19710 1.25107 1.94935 1.21923 0.93657 0.86829 0.96777 0.89635 1.22427 1.03623 1.02611 0.94974 1.20356 0.86080 0.83779 0.79524 1.90715 1.69139 1.29459 1.50340 1.48019 1.21476 1.06274 1.58418 1.21884 0.99651 0.83480 0.97020 1.21860 0.97455 0.99631 0.97288 1.22015 0.94233 0.95715 0.97008 1.23792 0.90253 0.95986 0.99685 1.68401 1.26327 1.12104 1.10400 1.22447 1.01774 0.90204 0.97678 1.19704 0.84543 0.83082 0.89794 1.90522 1.55768 1.59503 1.40476 1.41868 1.62636 1.06467 1.09204 1.19645 1.45763 0.92152 0.85304 0.88015 1.25260 0.97343 0.96091 0.99266 1.69604 1.49427 1.06084 1.29275 0.85919 0.79059 0.77515 0.81734 1.19935 1.20973 1.19884 1.24053 0.97214 0.97880 0.93193 1.21615 1.03294 0.92312 0.96945 1.21684 0.83516 1.01627 0.93965 0.93759 0.89073 0.93794 0.90958 0.91142 0.90170 0.89512 0.90674 0.90278 0.91044 0.88885 0.91661 0.92998 0.89295 0.77536 0.91841 0.91511 0.89581 0.88966 0.91324 0.91103 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.27 16 2 O -0.36 -3.76 9.89 -55.09 -0.54 -4.31 16 3 C 0.07 0.58 2.30 -27.88 -0.06 0.52 16 4 H 0.09 0.53 7.09 -51.93 -0.37 0.16 16 5 C -0.18 -1.06 9.09 37.16 0.34 -0.72 16 6 C 0.52 5.89 7.11 -10.98 -0.08 5.81 16 7 O -0.52 -8.28 15.90 -14.30 -0.23 -8.51 16 8 N -0.61 -5.64 2.95 -172.90 -0.51 -6.15 16 9 C 0.10 0.67 4.88 -3.89 -0.02 0.65 16 10 C -0.12 -0.97 5.24 -26.95 -0.14 -1.11 16 11 C -0.09 -0.94 0.77 -154.40 -0.12 -1.06 16 12 C 0.03 0.46 5.88 -2.95 -0.02 0.44 16 13 N -0.45 -7.09 5.78 -241.59 -1.40 -8.48 16 14 C 0.01 0.19 5.31 -4.97 -0.03 0.16 16 15 C 0.44 10.38 7.59 -10.99 -0.08 10.30 16 16 O -0.58 -15.59 15.13 5.55 0.08 -15.50 16 17 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 18 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 19 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 21 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 22 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.01 0.06 6.76 -2.93 -0.02 0.04 16 27 C -0.10 -1.12 5.22 -26.71 -0.14 -1.26 16 28 C 0.11 1.14 6.30 -3.64 -0.02 1.12 16 29 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.19 7.87 -51.93 -0.41 -0.22 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.31 7.87 -51.93 -0.41 -0.10 16 34 H 0.08 0.35 5.40 -51.93 -0.28 0.07 16 35 H 0.09 0.39 4.55 -51.93 -0.24 0.16 16 36 H 0.08 0.42 8.07 -51.93 -0.42 0.00 16 37 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.57 8.04 -51.93 -0.42 1.15 16 40 H 0.07 0.95 7.73 -51.93 -0.40 0.55 16 41 H 0.05 0.80 7.70 -51.93 -0.40 0.40 16 42 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.39 9.42 7.90 -40.82 -0.32 9.09 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.07 0.65 7.72 -51.93 -0.40 0.25 16 46 H 0.09 0.89 7.40 -51.93 -0.38 0.50 16 47 H 0.09 1.12 8.01 -51.93 -0.42 0.71 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.07 0.64 7.49 -51.93 -0.39 0.25 16 50 H 0.09 1.08 6.98 -51.93 -0.36 0.72 16 LS Contribution 393.50 15.07 5.93 5.93 Total: -1.00 -34.97 393.50 -8.64 -43.61 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -8.08 Total: 7.21 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 0.46 Total: 8.19 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -1.24 Total: -52.61 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.69 Total: -28.31 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.97 -8.64 -43.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270832982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.459 kcal (2) G-P(sol) polarization free energy of solvation -34.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds