Wall clock time and date at job start Tue Mar 31 2020 22:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00204 * 2 1 4 4 H 1.09002 * 109.46880 * 329.99601 * 3 2 1 5 5 C 1.52997 * 109.47503 * 89.99725 * 3 2 1 6 6 C 1.50708 * 109.47227 * 210.00045 * 3 2 1 7 7 O 1.21280 * 119.99888 * 354.99553 * 6 3 2 8 8 N 1.34777 * 119.99928 * 174.99661 * 6 3 2 9 9 C 1.46879 * 120.46638 * 359.72053 * 8 6 3 10 10 C 1.52899 * 108.99691 * 235.51245 * 9 8 6 11 11 C 1.52679 * 109.16778 * 307.79399 * 10 9 8 12 12 C 1.53480 * 113.61515 * 188.98889 * 11 10 9 13 13 N 1.48039 * 86.05491 * 137.83555 * 12 11 10 14 14 C 1.46902 * 111.00101 * 222.70291 * 13 12 11 15 15 C 1.50702 * 109.47033 * 289.44109 * 14 13 12 16 16 O 1.21291 * 120.00194 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99916 * 179.97438 * 15 14 13 18 18 C 1.37092 * 119.99961 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00157 * 359.97438 * 18 17 15 20 20 C 1.38961 * 119.99850 * 179.97438 * 18 17 15 21 21 N 1.31409 * 119.99810 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99918 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47064 * 59.99737 * 22 20 18 24 24 H 1.48500 * 109.47028 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46917 * 300.00166 * 22 20 18 26 26 C 1.48048 * 90.83639 * 335.62960 * 13 12 11 27 27 C 1.52670 * 113.17560 * 57.48086 * 11 10 9 28 28 C 1.46881 * 120.46425 * 179.97438 * 8 6 3 29 29 H 1.09000 * 109.46567 * 60.00876 * 1 2 3 30 30 H 1.09001 * 109.47118 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47054 * 300.00226 * 1 2 3 32 32 H 1.09002 * 109.47153 * 60.00043 * 5 3 2 33 33 H 1.09001 * 109.46832 * 300.00234 * 5 3 2 34 34 H 1.09004 * 109.47261 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.59239 * 355.33328 * 9 8 6 36 36 H 1.09000 * 109.59115 * 115.77251 * 9 8 6 37 37 H 1.08996 * 109.60175 * 187.82363 * 10 9 8 38 38 H 1.09004 * 109.45904 * 67.67327 * 10 9 8 39 39 H 1.09003 * 113.77456 * 252.12543 * 12 11 10 40 40 H 1.09002 * 113.77872 * 23.54704 * 12 11 10 41 41 H 1.08992 * 109.46945 * 49.44355 * 14 13 12 42 42 H 1.08999 * 109.46585 * 169.44496 * 14 13 12 43 43 H 0.97003 * 120.00212 * 359.97438 * 17 15 14 44 44 H 0.97002 * 119.99279 * 179.97438 * 21 20 18 45 45 H 1.09004 * 113.77602 * 270.08477 * 26 13 12 46 46 H 1.08999 * 113.88543 * 138.66208 * 26 13 12 47 47 H 1.09002 * 109.53253 * 182.50489 * 27 11 10 48 48 H 1.08998 * 109.59311 * 62.32675 * 27 11 10 49 49 H 1.09004 * 109.58777 * 244.23802 * 28 8 6 50 50 H 1.09006 * 109.58763 * 4.66585 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 3.3387 1.2638 -0.7104 7 8 3.7898 0.2044 -1.0914 8 7 4.0255 2.4039 -0.9225 9 6 3.4860 3.6932 -0.4709 10 6 3.4136 4.6475 -1.6633 11 6 4.7751 4.6926 -2.3527 12 6 4.8833 5.7811 -3.4294 13 7 6.2319 6.0471 -2.8797 14 6 6.4830 7.4909 -2.7765 15 6 6.6441 8.0726 -4.1574 16 8 6.5577 7.3552 -5.1316 17 7 6.8831 9.3902 -4.3098 18 6 7.0291 9.9195 -5.5660 19 1 6.9530 9.2806 -6.4334 20 6 7.2750 11.2781 -5.7232 21 7 7.3671 12.0555 -4.6678 22 14 7.4747 11.9992 -7.4348 23 1 6.2347 11.7660 -8.2179 24 1 7.7279 13.4587 -7.3305 25 1 8.6208 11.3459 -8.1165 26 6 5.8331 5.4831 -1.5702 27 6 5.2584 3.3214 -2.8186 28 6 5.3214 2.3752 -1.6133 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.8829 1.0775 1.9563 33 1 1.2568 1.8015 1.9562 34 1 2.6607 2.7674 1.4424 35 1 2.4869 3.5477 -0.0601 36 1 4.1394 4.1156 0.2925 37 1 3.1472 5.6461 -1.3169 38 1 2.6604 4.2929 -2.3670 39 1 4.8925 5.3925 -4.4478 40 1 4.1828 6.6051 -3.2934 41 1 5.6423 7.9709 -2.2758 42 1 7.3935 7.6611 -2.2021 43 1 6.9511 9.9641 -3.5308 44 1 7.5391 13.0038 -4.7776 45 1 5.4137 6.2189 -0.8841 46 1 6.5967 4.8573 -1.1083 47 1 6.2505 3.4154 -3.2603 48 1 4.5660 2.9223 -3.5598 49 1 6.1063 2.7030 -0.9316 50 1 5.5311 1.3614 -1.9548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270832982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:52 Heat of formation + Delta-G solvation = -97.018856 kcal Electronic energy + Delta-G solvation = -30201.999601 eV Core-core repulsion = 26036.715857 eV Total energy + Delta-G solvation = -4165.283744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.14750 -40.99142 -39.75642 -38.62430 -37.34030 -35.93626 -33.95240 -33.28304 -32.73807 -31.58534 -29.75289 -27.73843 -27.43047 -26.83733 -25.75604 -24.79542 -23.94061 -22.73854 -21.01098 -20.81745 -19.87665 -19.15310 -18.28645 -17.82760 -17.69986 -17.02669 -16.80279 -16.60166 -16.46410 -16.14267 -15.81265 -15.79187 -15.55452 -15.47776 -15.20814 -14.56707 -14.44489 -14.32612 -14.03228 -13.88877 -13.58255 -13.50855 -13.36849 -13.21672 -12.97157 -12.89615 -12.79355 -12.74645 -12.44756 -12.43973 -12.17585 -12.14032 -12.08839 -11.57933 -11.52258 -11.42161 -11.17557 -10.95182 -10.48854 -10.31440 -10.01769 -9.70549 -9.52728 -8.47338 -5.95802 1.38430 1.40440 1.51128 1.52231 1.75261 2.05700 2.28261 2.88028 2.91449 3.19295 3.25662 3.41160 3.43421 3.69452 3.81609 3.93404 4.02811 4.06814 4.10906 4.25695 4.30858 4.36712 4.46017 4.50149 4.52992 4.55229 4.57293 4.59400 4.63750 4.68523 4.71436 4.79687 4.83748 4.86838 4.91145 4.94466 5.01474 5.11555 5.23513 5.28587 5.33746 5.39585 5.49929 5.55420 5.93572 6.07066 6.14781 6.38584 6.60357 7.11807 7.12534 7.56226 8.12663 8.69767 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031076 B = 0.001921 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.793977 B =14575.429321 C =14660.061960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.399 6.399 3 C 0.069 3.931 4 H 0.113 0.887 5 C -0.173 4.173 6 C 0.507 3.493 7 O -0.580 6.580 8 N -0.601 5.601 9 C 0.100 3.900 10 C -0.119 4.119 11 C -0.071 4.071 12 C 0.024 3.976 13 N -0.483 5.483 14 C 0.025 3.975 15 C 0.439 3.561 16 O -0.621 6.621 17 N -0.574 5.574 18 C -0.334 4.334 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.272 1.272 24 H -0.269 1.269 25 H -0.274 1.274 26 C 0.017 3.983 27 C -0.098 4.098 28 C 0.119 3.881 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.106 0.894 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.072 0.928 48 H 0.054 0.946 49 H 0.088 0.912 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.387 -14.614 18.052 27.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.318 6.318 3 C 0.008 3.992 4 H 0.130 0.870 5 C -0.230 4.230 6 C 0.296 3.704 7 O -0.459 6.459 8 N -0.335 5.335 9 C -0.022 4.022 10 C -0.158 4.158 11 C -0.072 4.072 12 C -0.105 4.105 13 N -0.206 5.206 14 C -0.107 4.107 15 C 0.227 3.773 16 O -0.507 6.507 17 N -0.212 5.212 18 C -0.463 4.463 19 H 0.094 0.906 20 C -0.212 4.212 21 N -0.560 5.560 22 Si 0.815 3.185 23 H -0.197 1.197 24 H -0.193 1.193 25 H -0.200 1.200 26 C -0.111 4.111 27 C -0.136 4.136 28 C -0.003 4.003 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.133 0.867 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.124 0.876 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.091 0.909 48 H 0.073 0.927 49 H 0.106 0.894 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.464 -15.826 16.899 26.783 hybrid contribution -0.284 1.382 -0.718 1.583 sum -13.748 -14.444 16.181 25.680 Atomic orbital electron populations 1.23085 0.78651 1.04132 1.01495 1.88006 1.21917 1.26635 1.95212 1.22089 0.92075 0.86818 0.98172 0.86997 1.22426 1.04573 1.03004 0.92990 1.21103 0.87081 0.83319 0.78931 1.90684 1.70698 1.31640 1.52904 1.48109 1.20829 1.07109 1.57415 1.22187 1.01749 0.81457 0.96772 1.21862 0.95087 1.01286 0.97516 1.21851 0.96203 0.93826 0.95322 1.23749 0.90120 0.97638 0.98986 1.68394 1.27390 1.10964 1.13805 1.22341 1.03709 0.91262 0.93375 1.20859 0.82230 0.82206 0.92050 1.90495 1.56995 1.60341 1.42865 1.41940 1.63370 1.07358 1.08535 1.19588 1.48114 0.92774 0.85870 0.90614 1.26010 0.96381 0.95839 1.02982 1.69658 1.49117 1.06478 1.30732 0.85017 0.78816 0.77324 0.77347 1.19718 1.19328 1.19960 1.24158 0.97366 0.97935 0.91619 1.21500 1.01904 0.93131 0.97087 1.21543 0.84742 1.00094 0.93937 0.93022 0.88816 0.91551 0.92748 0.89088 0.88067 0.86663 0.88340 0.88118 0.91396 0.92700 0.91462 0.90229 0.87603 0.76986 0.91282 0.88664 0.88388 0.90891 0.92688 0.89407 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.82 113.37 1.23 1.46 16 2 O -0.40 -7.94 9.89 -129.99 -1.29 -9.23 16 3 C 0.07 1.01 2.30 29.85 0.07 1.08 16 4 H 0.11 0.98 7.09 -2.39 -0.02 0.97 16 5 C -0.17 -1.46 9.09 71.98 0.65 -0.81 16 6 C 0.51 11.15 7.11 87.66 0.62 11.77 16 7 O -0.58 -19.07 15.90 15.96 0.25 -18.82 16 8 N -0.60 -10.03 2.95 -819.33 -2.41 -12.44 16 9 C 0.10 0.87 4.88 86.27 0.42 1.29 16 10 C -0.12 -1.45 5.24 30.45 0.16 -1.29 16 11 C -0.07 -1.38 0.77 -52.04 -0.04 -1.42 16 12 C 0.02 0.70 5.88 86.24 0.51 1.21 16 13 N -0.48 -14.68 5.78 -918.24 -5.31 -19.99 16 14 C 0.02 0.82 5.31 85.56 0.45 1.27 16 15 C 0.44 20.83 7.59 87.66 0.67 21.50 16 16 O -0.62 -34.72 15.13 -3.06 -0.05 -34.76 16 17 N -0.57 -29.37 5.29 -306.98 -1.62 -30.99 16 18 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 19 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 20 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 21 N -0.92 -49.20 13.05 21.67 0.28 -48.92 16 22 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 C 0.02 0.32 6.76 86.25 0.58 0.91 16 27 C -0.10 -2.13 5.22 30.61 0.16 -1.97 16 28 C 0.12 2.32 6.30 86.43 0.54 2.86 16 29 H 0.05 0.45 8.08 -2.39 -0.02 0.43 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.39 7.87 -2.39 -0.02 0.37 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 0.42 7.87 -2.39 -0.02 0.41 16 34 H 0.10 0.39 5.40 -2.38 -0.01 0.38 16 35 H 0.12 0.42 4.55 -2.39 -0.01 0.41 16 36 H 0.10 0.52 8.07 -2.39 -0.02 0.50 16 37 H 0.10 0.89 8.12 -2.39 -0.02 0.87 16 38 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.05 1.98 8.04 -2.39 -0.02 1.96 16 40 H 0.07 1.89 7.73 -2.39 -0.02 1.87 16 41 H 0.08 2.20 7.70 -2.39 -0.02 2.18 16 42 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 43 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 44 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 45 H 0.10 1.33 7.72 -2.38 -0.02 1.31 16 46 H 0.10 1.66 7.40 -2.39 -0.02 1.64 16 47 H 0.07 1.87 8.01 -2.39 -0.02 1.85 16 48 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.09 1.42 7.49 -2.38 -0.02 1.40 16 50 H 0.07 1.74 6.98 -2.38 -0.02 1.73 16 Total: -1.00 -81.12 393.50 -0.58 -81.71 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: 0.22 Total: 28.99 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 7.31 Total: 19.47 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -9.06 Total: -112.34 kcal Atomic # 8 Polarization: -61.73 SS G_CDS: -1.08 Total: -62.81 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -81.12 -0.58 -81.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270832982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.313 kcal (2) G-P(sol) polarization free energy of solvation -81.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds