Wall clock time and date at job start Tue Mar 31 2020 22:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46914 * 2 1 4 4 N 1.46500 * 109.47231 * 119.99978 * 2 1 3 5 5 C 1.34775 * 119.99541 * 275.00043 * 4 2 1 6 6 O 1.21283 * 120.00348 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99595 * 180.02562 * 5 4 2 8 8 C 1.54270 * 110.03249 * 297.90852 * 7 5 4 9 9 C 1.54967 * 104.16254 * 217.14009 * 8 7 5 10 10 C 1.54891 * 102.77639 * 37.88463 * 9 8 7 11 11 C 1.53883 * 110.03310 * 180.69275 * 7 5 4 12 12 C 1.50693 * 109.47069 * 240.00118 * 2 1 3 13 13 O 1.21278 * 120.00092 * 239.99715 * 12 2 1 14 14 N 1.34780 * 120.00188 * 59.99899 * 12 2 1 15 15 C 1.46504 * 119.99814 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.46941 * 180.02562 * 15 14 12 17 17 O 1.42905 * 113.28091 * 313.06421 * 16 15 14 18 18 C 1.53495 * 114.20669 * 180.02562 * 16 15 14 19 19 N 1.47066 * 87.98658 * 220.34216 * 18 16 15 20 20 C 1.36937 * 136.06113 * 206.85859 * 19 18 16 21 21 H 1.07995 * 120.00001 * 0.02562 * 20 19 18 22 22 C 1.38817 * 120.00320 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99557 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99975 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47363 * 60.00463 * 24 22 20 26 26 H 1.48506 * 109.46719 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47174 * 300.00290 * 24 22 20 28 28 C 1.47067 * 87.88528 * 27.11900 * 19 18 16 29 29 H 1.08999 * 109.47156 * 60.00164 * 1 2 3 30 30 H 1.09003 * 109.46914 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47138 * 299.99731 * 1 2 3 32 32 H 0.96993 * 120.00341 * 95.00356 * 4 2 1 33 33 H 1.08994 * 110.02015 * 59.29897 * 7 5 4 34 34 H 1.09001 * 110.48600 * 335.78083 * 8 7 5 35 35 H 1.08992 * 110.48673 * 98.43020 * 8 7 5 36 36 H 1.09003 * 110.71628 * 279.57256 * 9 8 7 37 37 H 1.08996 * 110.92791 * 156.29680 * 9 8 7 38 38 H 1.09007 * 110.48643 * 203.40955 * 10 9 8 39 39 H 1.08998 * 110.60272 * 80.82291 * 10 9 8 40 40 H 1.08999 * 110.03006 * 238.56958 * 11 7 5 41 41 H 1.09000 * 110.03078 * 359.94755 * 11 7 5 42 42 H 0.96992 * 119.99879 * 359.97438 * 14 12 2 43 43 H 1.09003 * 109.47373 * 59.99924 * 15 14 12 44 44 H 1.08997 * 109.47135 * 299.99923 * 15 14 12 45 45 H 0.96696 * 113.99817 * 46.93921 * 17 16 15 46 46 H 1.09005 * 113.46950 * 105.56781 * 18 16 15 47 47 H 1.08994 * 113.52293 * 335.13266 * 18 16 15 48 48 H 0.96999 * 119.99537 * 179.97438 * 23 22 20 49 49 H 1.09007 * 113.46858 * 87.65629 * 28 19 18 50 50 H 1.08993 * 113.47208 * 218.09965 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8581 1.1585 2.4116 7 6 2.6500 -0.7284 3.5874 8 6 1.6794 -1.8627 3.9766 9 6 1.6763 -1.8440 5.5262 10 6 1.7423 -0.3309 5.8506 11 6 2.6904 0.2450 4.7785 12 6 2.0323 -0.7103 -1.2304 13 8 2.7296 -1.6964 -1.1192 14 7 1.7067 -0.2499 -2.4546 15 6 2.1946 -0.9409 -3.6507 16 6 1.6852 -0.2192 -4.9000 17 8 0.2916 0.0919 -4.8437 18 6 2.1345 -0.8565 -6.2221 19 7 2.3405 0.5018 -6.7469 20 6 2.3257 1.0949 -7.9810 21 1 2.1202 0.5042 -8.8615 22 6 2.5739 2.4554 -8.1004 23 7 2.8240 3.1753 -7.0273 24 14 2.5530 3.2645 -9.7839 25 1 1.2138 3.0887 -10.4010 26 1 2.8462 4.7132 -9.6405 27 1 3.5830 2.6347 -10.6486 28 6 2.5760 0.9417 -5.3634 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2491 -1.6317 1.1527 33 1 3.6444 -1.1347 3.4034 34 1 0.6805 -1.6591 3.5909 35 1 2.0444 -2.8207 3.6067 36 1 2.5509 -2.3620 5.9198 37 1 0.7596 -2.2837 5.9190 38 1 2.1529 -0.1721 6.8478 39 1 0.7543 0.1223 5.7693 40 1 3.7044 0.3105 5.1730 41 1 2.3471 1.2314 4.4664 42 1 1.1488 0.5385 -2.5435 43 1 1.8309 -1.9684 -3.6506 44 1 3.2846 -0.9413 -3.6509 45 1 0.0116 0.4931 -4.0096 46 1 1.3412 -1.4031 -6.7322 47 1 3.0555 -1.4330 -6.1363 48 1 2.9977 4.1260 -7.1107 49 1 3.6149 0.8445 -5.0478 50 1 2.1583 1.9241 -5.1432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271289860.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:46 Heat of formation + Delta-G solvation = -98.706770 kcal Electronic energy + Delta-G solvation = -29735.982146 eV Core-core repulsion = 25570.625208 eV Total energy + Delta-G solvation = -4165.356938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.72698 -40.99440 -40.16567 -38.05176 -36.65541 -36.08164 -35.36243 -34.09409 -32.34652 -30.33360 -29.70207 -29.46350 -27.83206 -26.55380 -25.53614 -23.87634 -22.79581 -21.62340 -21.39149 -21.04025 -20.70753 -19.28594 -18.76102 -18.21226 -17.58569 -17.19414 -17.01701 -16.59787 -16.39033 -16.23922 -15.84164 -15.74506 -15.63870 -15.19155 -15.06203 -14.54452 -14.45026 -14.42227 -14.17874 -13.92156 -13.81107 -13.38707 -13.35755 -13.01274 -12.80398 -12.72578 -12.61744 -12.50519 -12.29497 -12.25622 -12.01064 -11.92747 -11.80544 -11.64301 -11.40956 -11.40228 -11.05258 -10.94536 -10.81093 -10.69008 -10.28883 -10.17930 -8.95634 -7.93106 -5.25845 1.41100 1.44379 1.48118 1.53971 1.55299 1.72981 2.32151 2.45462 3.03127 3.28575 3.32240 3.43182 3.52186 3.61183 3.67981 3.80660 3.88996 4.00524 4.07836 4.26365 4.38020 4.48605 4.55505 4.57246 4.63793 4.68674 4.70146 4.73905 4.76918 4.79027 4.82196 4.93258 4.99798 5.10663 5.14604 5.15851 5.19776 5.24715 5.25565 5.28059 5.30520 5.45232 5.46477 5.48414 5.90038 6.29291 6.45871 6.80672 6.88497 7.00940 7.16764 7.57026 8.55455 9.24120 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026908 B = 0.001915 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.334512 B =14620.250660 C =15076.478470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.126 3.874 3 H 0.109 0.891 4 N -0.707 5.707 5 C 0.520 3.480 6 O -0.576 6.576 7 C -0.111 4.111 8 C -0.113 4.113 9 C -0.120 4.120 10 C -0.124 4.124 11 C -0.122 4.122 12 C 0.519 3.481 13 O -0.565 6.565 14 N -0.710 5.710 15 C 0.123 3.877 16 C 0.094 3.906 17 O -0.535 6.535 18 C 0.128 3.872 19 N -0.635 5.635 20 C -0.229 4.229 21 H 0.084 0.916 22 C -0.068 4.068 23 N -0.952 5.952 24 Si 0.982 3.018 25 H -0.276 1.276 26 H -0.294 1.294 27 H -0.276 1.276 28 C 0.132 3.868 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.416 0.584 33 H 0.115 0.885 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.411 0.589 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.382 0.618 46 H 0.054 0.946 47 H 0.072 0.928 48 H 0.248 0.752 49 H 0.027 0.973 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.062 -11.909 25.854 28.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.017 3.983 3 H 0.126 0.874 4 N -0.360 5.360 5 C 0.309 3.691 6 O -0.455 6.455 7 C -0.132 4.132 8 C -0.150 4.150 9 C -0.157 4.157 10 C -0.162 4.162 11 C -0.160 4.160 12 C 0.305 3.695 13 O -0.444 6.444 14 N -0.364 5.364 15 C -0.002 4.002 16 C 0.051 3.949 17 O -0.342 6.342 18 C 0.002 3.998 19 N -0.361 5.361 20 C -0.357 4.357 21 H 0.102 0.898 22 C -0.261 4.261 23 N -0.601 5.601 24 Si 0.809 3.191 25 H -0.202 1.202 26 H -0.220 1.220 27 H -0.202 1.202 28 C 0.006 3.994 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.253 0.747 33 H 0.133 0.867 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.248 0.752 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.231 0.769 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.057 0.943 49 H 0.045 0.955 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.740 -11.767 25.066 27.942 hybrid contribution 0.228 1.173 -0.767 1.420 sum -3.512 -10.595 24.299 26.740 Atomic orbital electron populations 1.22113 0.90907 1.03811 1.04356 1.20770 0.97066 0.97534 0.82905 0.87358 1.45765 1.67104 1.15028 1.08084 1.21141 0.76212 0.86739 0.85056 1.90668 1.51821 1.17724 1.85310 1.22034 1.02059 0.97360 0.91730 1.22396 0.98237 0.97166 0.97237 1.22516 1.03008 0.95852 0.94316 1.22367 0.99111 0.96055 0.98648 1.22180 1.01008 0.98844 0.93971 1.20732 0.79556 0.84204 0.84994 1.90687 1.39070 1.27670 1.86931 1.45752 1.53430 1.32207 1.04970 1.21682 0.99851 0.96731 0.81906 1.22842 0.82250 0.96145 0.93672 1.86610 1.21839 1.83514 1.42233 1.22619 0.98403 0.88737 0.89996 1.45627 1.82185 1.05408 1.02845 1.19257 1.40672 0.91785 0.83940 0.89796 1.25646 1.02484 0.96798 1.01175 1.69985 1.55260 1.06106 1.28763 0.85109 0.78192 0.76874 0.78896 1.20243 1.21964 1.20219 1.22770 0.95398 0.97100 0.84140 0.89046 0.90951 0.91378 0.74658 0.86713 0.91823 0.89053 0.90045 0.90460 0.90451 0.92469 0.90430 0.91820 0.75212 0.89324 0.90547 0.76897 0.92770 0.91013 0.94271 0.95527 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.38 71.98 0.68 -1.56 16 2 C 0.13 2.38 2.98 44.24 0.13 2.51 16 3 H 0.11 2.27 7.58 -2.39 -0.02 2.26 16 4 N -0.71 -12.82 4.89 -446.10 -2.18 -15.00 16 5 C 0.52 10.50 6.96 87.66 0.61 11.11 16 6 O -0.58 -15.90 14.87 -3.04 -0.05 -15.95 16 7 C -0.11 -1.54 3.30 -10.81 -0.04 -1.58 16 8 C -0.11 -1.13 6.30 31.70 0.20 -0.93 16 9 C -0.12 -1.02 6.91 31.91 0.22 -0.80 16 10 C -0.12 -1.43 6.83 31.67 0.22 -1.21 16 11 C -0.12 -1.82 6.40 31.32 0.20 -1.62 16 12 C 0.52 11.59 7.22 87.65 0.63 12.22 16 13 O -0.56 -15.78 15.84 -3.02 -0.05 -15.83 16 14 N -0.71 -15.17 5.23 -463.06 -2.42 -17.60 16 15 C 0.12 3.22 5.43 86.38 0.47 3.69 16 16 C 0.09 3.18 1.73 -10.46 -0.02 3.16 16 17 O -0.54 -17.84 13.56 -148.98 -2.02 -19.86 16 18 C 0.13 5.03 8.11 83.18 0.67 5.71 16 19 N -0.64 -32.65 3.78 -738.90 -2.79 -35.45 16 20 C -0.23 -13.01 10.75 84.03 0.90 -12.11 16 21 H 0.08 4.57 7.83 -2.91 -0.02 4.54 16 22 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 23 N -0.95 -57.62 11.51 21.65 0.25 -57.37 16 24 Si 0.98 46.13 29.55 68.60 2.03 48.16 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 28 C 0.13 6.00 6.83 83.18 0.57 6.57 16 29 H 0.09 1.02 7.56 -2.39 -0.02 1.00 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.42 6.70 7.78 -92.71 -0.72 5.98 16 33 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 0.75 7.85 -2.39 -0.02 0.73 16 35 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 1.32 6.39 -2.39 -0.02 1.30 16 42 H 0.41 7.22 6.36 -92.71 -0.59 6.63 16 43 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.08 2.15 7.89 -2.39 -0.02 2.13 16 45 H 0.38 8.79 7.20 -74.06 -0.53 8.26 16 46 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 47 H 0.07 2.52 8.10 -2.39 -0.02 2.50 16 48 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 49 H 0.03 1.24 7.93 -2.38 -0.02 1.22 16 50 H 0.04 2.31 7.12 -2.39 -0.02 2.29 16 Total: -1.00 -77.44 402.64 -2.20 -79.64 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: -0.88 Total: 27.55 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 5.91 Total: 21.71 kcal Atomic # 7 Polarization: -118.27 SS G_CDS: -7.15 Total: -125.42 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -2.11 Total: -51.64 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -77.44 -2.20 -79.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271289860.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.066 kcal (2) G-P(sol) polarization free energy of solvation -77.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds