Wall clock time and date at job start Tue Mar 31 2020 23:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46506 * 109.47435 * 2 1 4 4 C 1.46498 * 120.00158 * 274.86132 * 3 2 1 5 5 C 1.52998 * 109.47271 * 257.07295 * 4 3 2 6 6 C 1.34782 * 119.99789 * 94.85810 * 3 2 1 7 7 O 1.21583 * 120.00066 * 1.44440 * 6 3 2 8 8 N 1.34775 * 119.99801 * 181.16934 * 6 3 2 9 9 C 1.47179 * 135.99527 * 354.65723 * 8 6 3 10 10 C 1.53139 * 87.73548 * 153.47476 * 9 8 6 11 11 C 1.47176 * 135.99699 * 175.02713 * 8 6 3 12 12 C 1.52440 * 114.50396 * 271.88176 * 10 9 8 13 13 N 1.46296 * 109.56319 * 272.19585 * 12 10 9 14 14 C 1.46500 * 118.72476 * 164.05418 * 13 12 10 15 15 C 1.53002 * 109.47065 * 90.00058 * 14 13 12 16 16 C 1.50703 * 109.47072 * 179.97438 * 15 14 13 17 17 H 1.07991 * 120.00015 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99489 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00461 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99462 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47125 * 90.00012 * 20 18 16 22 22 H 1.48500 * 109.46592 * 209.99872 * 20 18 16 23 23 H 1.48495 * 109.46959 * 329.99791 * 20 18 16 24 24 C 1.33714 * 122.54897 * 344.07968 * 13 12 10 25 25 O 1.21281 * 118.36113 * 183.31232 * 24 13 12 26 26 C 1.50166 * 123.27827 * 3.33647 * 24 13 12 27 27 O 1.42549 * 114.16415 * 139.80257 * 10 9 8 28 28 H 1.09012 * 109.47310 * 59.99755 * 1 2 3 29 29 H 1.08997 * 109.47316 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47015 * 300.00186 * 1 2 3 31 31 H 1.08996 * 109.47239 * 240.00066 * 2 1 3 32 32 H 1.08999 * 109.47008 * 120.00139 * 2 1 3 33 33 H 1.09001 * 109.47256 * 17.07614 * 4 3 2 34 34 H 1.09003 * 109.47060 * 137.07333 * 4 3 2 35 35 H 1.09007 * 109.46830 * 59.99575 * 5 4 3 36 36 H 1.08995 * 109.47104 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.47241 * 300.00328 * 5 4 3 38 38 H 1.09002 * 113.49403 * 268.16758 * 9 8 6 39 39 H 1.08997 * 113.49443 * 38.68331 * 9 8 6 40 40 H 1.09004 * 113.49366 * 321.31977 * 11 8 6 41 41 H 1.08999 * 113.49330 * 91.76809 * 11 8 6 42 42 H 1.09003 * 109.45274 * 32.21921 * 12 10 9 43 43 H 1.08990 * 109.45812 * 152.16675 * 12 10 9 44 44 H 1.08999 * 109.47165 * 209.99732 * 14 13 12 45 45 H 1.09002 * 109.47405 * 330.00043 * 14 13 12 46 46 H 1.08999 * 109.46863 * 299.99859 * 15 14 13 47 47 H 1.09002 * 109.47022 * 59.99750 * 15 14 13 48 48 H 0.97003 * 120.00159 * 179.97438 * 19 18 16 49 49 H 1.08991 * 109.34664 * 102.47562 * 26 24 13 50 50 H 1.09007 * 109.34268 * 222.16684 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1612 2.1077 -1.2641 5 6 3.6377 2.1525 -1.6626 6 6 2.3362 1.9836 1.1631 7 8 2.2426 1.3722 2.2098 8 7 2.7631 3.2620 1.1652 9 6 3.0972 4.2682 0.1444 10 6 2.7377 5.3434 1.1739 11 6 3.1058 4.2619 2.1893 12 6 1.2660 5.7407 1.1854 13 7 1.0407 6.8137 0.2168 14 6 -0.3325 7.1099 -0.1990 15 6 -0.9326 8.1620 0.7359 16 6 -2.3450 8.4673 0.3078 17 1 -2.7716 7.9618 -0.5458 18 6 -3.0919 9.3927 1.0054 19 7 -2.5722 10.0086 2.0446 20 14 -4.8429 9.7705 0.4752 21 1 -5.7803 8.8554 1.1746 22 1 -5.1725 11.1764 0.8219 23 1 -4.9677 9.5802 -0.9922 24 6 2.0395 7.5341 -0.3041 25 8 1.7619 8.4457 -1.0544 26 6 3.4877 7.2705 -0.0070 27 8 3.6124 6.4690 1.1718 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 1.5903 1.5999 -2.0415 34 1 1.7865 3.1241 -1.1434 35 1 4.0125 1.1360 -1.7832 36 1 3.7439 2.6926 -2.6033 37 1 4.2086 2.6603 -0.8852 38 1 4.1507 4.2698 -0.1357 39 1 2.4310 4.2501 -0.7180 40 1 2.4468 4.2385 3.0572 41 1 4.1613 4.2611 2.4613 42 1 0.6550 4.8779 0.9202 43 1 0.9914 6.0874 2.1816 44 1 -0.3287 7.4911 -1.2201 45 1 -0.9304 6.1997 -0.1531 46 1 -0.9364 7.7809 1.7570 47 1 -0.3347 9.0723 0.6900 48 1 -3.0976 10.6599 2.5352 49 1 3.9396 6.7471 -0.8495 50 1 4.0029 8.2186 0.1476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274252090.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:28 Heat of formation + Delta-G solvation = -59.777000 kcal Electronic energy + Delta-G solvation = -31559.496446 eV Core-core repulsion = 27395.827630 eV Total energy + Delta-G solvation = -4163.668816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.74627 -41.22233 -39.82258 -37.59751 -37.25787 -36.98191 -35.12801 -33.27905 -32.16654 -31.33160 -30.16787 -28.75593 -27.63917 -27.25699 -26.34255 -24.54546 -24.15466 -23.41736 -22.01151 -20.29499 -19.59076 -19.12241 -18.74053 -18.32344 -17.76985 -17.48720 -17.11128 -16.99127 -16.51989 -16.42116 -15.80131 -15.61568 -15.24985 -15.03460 -14.84568 -14.68559 -14.65130 -14.41558 -14.28876 -14.18217 -13.99130 -13.69428 -13.54094 -13.37066 -13.29054 -12.94688 -12.86982 -12.78346 -12.59347 -12.54096 -12.21692 -11.93082 -11.91444 -11.85030 -11.74970 -11.49866 -11.39820 -10.99011 -10.60494 -10.52645 -10.10423 -9.73959 -9.45197 -8.24151 -6.36917 1.23366 1.38005 1.40596 1.47601 1.51932 1.81906 1.99328 2.37675 2.40598 2.58576 3.01019 3.09613 3.15612 3.56536 3.73605 3.83120 4.02822 4.13276 4.16700 4.23318 4.26476 4.28175 4.31651 4.39834 4.44129 4.50684 4.52727 4.55162 4.57860 4.63629 4.65300 4.66896 4.77481 4.90088 4.93639 4.98249 5.02114 5.12014 5.28808 5.34931 5.41856 5.54302 5.62629 5.68923 5.79312 5.97806 6.14116 6.40576 6.78678 6.86111 7.05688 7.32929 7.41687 8.88143 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011585 B = 0.003248 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.295935 B = 8619.326659 C = 9830.524837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.126 3.874 3 N -0.622 5.622 4 C 0.087 3.913 5 C -0.175 4.175 6 C 0.737 3.263 7 O -0.630 6.630 8 N -0.659 5.659 9 C 0.081 3.919 10 C 0.059 3.941 11 C 0.150 3.850 12 C 0.118 3.882 13 N -0.598 5.598 14 C 0.131 3.869 15 C 0.025 3.975 16 C -0.544 4.544 17 H 0.067 0.933 18 C 0.000 4.000 19 N -0.934 5.934 20 Si 0.970 3.030 21 H -0.268 1.268 22 H -0.284 1.284 23 H -0.261 1.261 24 C 0.470 3.530 25 O -0.587 6.587 26 C 0.063 3.937 27 O -0.345 6.345 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.030 0.970 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.127 0.873 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.120 0.880 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.085 0.915 46 H -0.007 1.007 47 H -0.023 1.023 48 H 0.264 0.736 49 H 0.130 0.870 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.832 -20.157 -8.192 26.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.003 3.997 3 N -0.358 5.358 4 C -0.034 4.034 5 C -0.233 4.233 6 C 0.442 3.558 7 O -0.511 6.511 8 N -0.399 5.399 9 C -0.041 4.041 10 C 0.017 3.983 11 C 0.027 3.973 12 C -0.004 4.004 13 N -0.330 5.330 14 C 0.009 3.991 15 C -0.013 4.013 16 C -0.582 4.582 17 H 0.085 0.915 18 C -0.198 4.198 19 N -0.573 5.573 20 Si 0.793 3.207 21 H -0.193 1.193 22 H -0.209 1.209 23 H -0.185 1.185 24 C 0.259 3.741 25 O -0.468 6.468 26 C -0.016 4.016 27 O -0.262 6.262 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.050 0.950 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.144 0.856 39 H 0.122 0.878 40 H 0.104 0.896 41 H 0.138 0.862 42 H 0.113 0.887 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.103 0.897 46 H 0.011 0.989 47 H -0.005 1.005 48 H 0.073 0.927 49 H 0.148 0.852 50 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 15.664 -20.128 -7.747 26.655 hybrid contribution -1.313 0.717 0.201 1.509 sum 14.351 -19.411 -7.546 25.292 Atomic orbital electron populations 1.22123 0.95725 1.02947 1.01397 1.21453 0.94296 0.80321 1.03581 1.47286 1.68521 1.15096 1.04901 1.22180 0.98446 0.97762 0.85061 1.22414 0.95181 1.03036 1.02658 1.15249 0.77586 0.78914 0.84089 1.90899 1.63416 1.64096 1.32680 1.48143 1.69831 1.09993 1.11961 1.24290 1.04022 0.82188 0.93583 1.22850 0.88844 0.85993 1.00615 1.22728 1.03515 0.79283 0.91820 1.21642 0.95424 0.90158 0.93222 1.47710 1.07424 1.34802 1.43034 1.21485 0.80085 0.98972 0.98564 1.19157 0.94781 0.93213 0.94152 1.21548 0.98886 1.23577 1.14193 0.91509 1.26021 1.03415 0.95536 0.94830 1.70117 1.39031 1.27710 1.20478 0.85383 0.78701 0.77441 0.79138 1.19321 1.20934 1.18543 1.21738 0.90377 0.81519 0.80430 1.90753 1.85069 1.31468 1.39507 1.22922 0.89361 0.98977 0.90323 1.88106 1.59341 1.37929 1.40837 0.91774 0.89932 0.95030 0.87787 0.91491 0.88025 0.90274 0.92203 0.89332 0.92456 0.85591 0.87774 0.89647 0.86189 0.88674 0.91355 0.91779 0.89693 0.98864 1.00462 0.92736 0.85222 0.83944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 10.24 71.98 0.74 -1.74 16 2 C 0.13 1.92 6.14 86.38 0.53 2.45 16 3 N -0.62 -10.97 2.52 -839.84 -2.12 -13.08 16 4 C 0.09 0.98 5.77 86.38 0.50 1.48 16 5 C -0.17 -1.47 9.29 71.98 0.67 -0.80 16 6 C 0.74 17.85 8.35 179.05 1.49 19.35 16 7 O -0.63 -20.80 16.62 -3.98 -0.07 -20.86 16 8 N -0.66 -12.67 3.37 -877.11 -2.95 -15.62 16 9 C 0.08 1.12 4.20 83.41 0.35 1.47 16 10 C 0.06 1.13 1.30 -10.98 -0.01 1.11 16 11 C 0.15 2.73 8.05 83.31 0.67 3.40 16 12 C 0.12 3.13 5.86 86.23 0.51 3.64 16 13 N -0.60 -20.17 2.84 -825.70 -2.34 -22.51 16 14 C 0.13 5.46 5.20 86.38 0.45 5.91 16 15 C 0.02 1.36 5.29 29.85 0.16 1.52 16 16 C -0.54 -31.41 9.11 25.60 0.23 -31.18 16 17 H 0.07 3.62 7.74 -2.92 -0.02 3.60 16 18 C 0.00 0.00 5.46 84.66 0.46 0.46 16 19 N -0.93 -58.34 13.29 21.45 0.28 -58.06 16 20 Si 0.97 44.80 29.54 68.60 2.03 46.82 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 23 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 24 C 0.47 15.62 7.57 87.66 0.66 16.28 16 25 O -0.59 -25.44 16.33 -3.03 -0.05 -25.49 16 26 C 0.06 1.29 6.71 71.07 0.48 1.77 16 27 O -0.35 -6.99 10.68 -148.98 -1.59 -8.58 16 28 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.10 0.95 8.11 -2.39 -0.02 0.93 16 32 H 0.07 1.31 7.26 -2.39 -0.02 1.29 16 33 H 0.10 0.81 7.98 -2.39 -0.02 0.79 16 34 H 0.08 0.98 4.69 -2.39 -0.01 0.97 16 35 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.06 0.57 5.09 -2.39 -0.01 0.55 16 38 H 0.13 1.13 6.91 -2.39 -0.02 1.12 16 39 H 0.10 1.33 4.92 -2.39 -0.01 1.32 16 40 H 0.09 1.72 8.11 -2.39 -0.02 1.70 16 41 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.10 2.35 7.84 -2.39 -0.02 2.33 16 43 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.06 2.84 7.29 -2.39 -0.02 2.82 16 45 H 0.08 3.14 7.97 -2.39 -0.02 3.13 16 46 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 47 H -0.02 -1.46 8.14 -2.39 -0.02 -1.48 16 48 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 49 H 0.13 1.63 7.99 -2.39 -0.02 1.61 16 50 H 0.14 2.70 8.14 -2.38 -0.02 2.68 16 Total: -1.00 -83.62 396.65 2.01 -81.61 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.93 Total: 10.65 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: 7.88 Total: 25.13 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -7.13 Total: -109.27 kcal Atomic # 8 Polarization: -53.23 SS G_CDS: -1.71 Total: -54.93 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -83.62 2.01 -81.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274252090.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.833 kcal (2) G-P(sol) polarization free energy of solvation -83.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds