Wall clock time and date at job start Wed Apr 1 2020 00:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47462 * 2 1 4 4 C 1.46499 * 120.00426 * 269.99967 * 3 2 1 5 5 C 1.34774 * 120.00008 * 90.00311 * 3 2 1 6 6 O 1.21596 * 120.00021 * 4.73868 * 5 3 2 7 7 N 1.34776 * 120.00437 * 184.74288 * 5 3 2 8 8 C 1.47086 * 125.62734 * 358.74180 * 7 5 3 9 9 C 1.54470 * 107.29792 * 178.99266 * 8 7 5 10 10 C 1.54309 * 102.86924 * 338.54360 * 9 8 7 11 11 C 1.47578 * 125.63134 * 178.72132 * 7 5 3 12 12 C 1.52028 * 110.68757 * 152.79818 * 10 9 8 13 13 N 1.46271 * 109.96325 * 170.21601 * 12 10 9 14 14 C 1.46500 * 118.81502 * 162.91542 * 13 12 10 15 15 C 1.52998 * 109.47241 * 269.99134 * 14 13 12 16 16 C 1.50698 * 109.47412 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99636 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00048 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99951 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99740 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47192 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47091 * 120.00052 * 20 18 16 23 23 H 1.48502 * 109.46785 * 239.99829 * 20 18 16 24 24 C 1.33837 * 122.36580 * 342.91200 * 13 12 10 25 25 O 1.21280 * 118.61477 * 182.99621 * 24 13 12 26 26 C 1.50266 * 122.76826 * 2.70987 * 24 13 12 27 27 O 1.42098 * 110.71738 * 276.30102 * 10 9 8 28 28 H 1.09000 * 109.46888 * 300.00209 * 1 2 3 29 29 H 1.09004 * 109.46858 * 59.99735 * 1 2 3 30 30 H 1.08998 * 109.47697 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46888 * 239.99791 * 2 1 3 32 32 H 1.09001 * 109.46906 * 120.00796 * 2 1 3 33 33 H 1.08995 * 109.47401 * 240.76438 * 4 3 2 34 34 H 1.09000 * 109.46944 * 0.76518 * 4 3 2 35 35 H 1.08998 * 109.47266 * 120.76244 * 4 3 2 36 36 H 1.09000 * 109.87871 * 59.56402 * 8 7 5 37 37 H 1.09008 * 109.87597 * 298.41540 * 8 7 5 38 38 H 1.09000 * 110.73009 * 220.19962 * 9 8 7 39 39 H 1.09000 * 110.73751 * 96.89113 * 9 8 7 40 40 H 1.08998 * 110.38175 * 84.45931 * 11 7 5 41 41 H 1.09008 * 110.37721 * 322.10425 * 11 7 5 42 42 H 1.09011 * 109.38270 * 290.36090 * 12 10 9 43 43 H 1.08997 * 109.39347 * 50.05298 * 12 10 9 44 44 H 1.08991 * 109.47344 * 29.99657 * 14 13 12 45 45 H 1.09009 * 109.47060 * 149.99813 * 14 13 12 46 46 H 1.09000 * 109.47258 * 300.00420 * 15 14 13 47 47 H 1.09004 * 109.46699 * 59.99925 * 15 14 13 48 48 H 0.97006 * 119.99604 * 180.02562 * 19 18 16 49 49 H 1.09002 * 109.39283 * 103.44035 * 26 24 13 50 50 H 1.09005 * 109.39585 * 223.25047 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 2.2431 2.0164 1.1672 6 8 2.1235 1.4172 2.2184 7 7 2.6003 3.3160 1.1693 8 6 2.8054 4.1501 -0.0247 9 6 3.1779 5.5675 0.4636 10 6 2.6288 5.5895 1.9056 11 6 2.8497 4.1371 2.3699 12 6 3.4222 6.5583 2.7676 13 7 2.7538 6.7434 4.0554 14 6 3.5123 7.3200 5.1683 15 6 4.1884 6.1987 5.9598 16 6 4.9682 6.7917 7.1049 17 1 4.9800 7.8614 7.2535 18 6 5.6665 5.9686 7.9628 19 7 5.6525 4.6662 7.7814 20 14 6.6325 6.7037 9.3826 21 1 6.4882 8.1816 9.3670 22 1 6.1109 6.1685 10.6658 23 1 8.0669 6.3454 9.2434 24 6 1.4741 6.4051 4.2537 25 8 0.9719 6.6389 5.3326 26 6 0.6316 5.7535 3.1937 27 8 1.2462 5.9177 1.9120 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5140 0.8899 33 1 3.3135 2.3539 -1.3324 34 1 2.0136 1.4087 -2.0971 35 1 1.6424 2.9666 -1.3205 36 1 1.8877 4.1895 -0.6115 37 1 3.6161 3.7409 -0.6278 38 1 2.6893 6.3267 -0.1470 39 1 4.2592 5.7051 0.4603 40 1 3.8741 4.0012 2.7166 41 1 2.1435 3.8795 3.1593 42 1 4.4229 6.1591 2.9334 43 1 3.4974 7.5186 2.2575 44 1 4.2713 7.9979 4.7780 45 1 2.8359 7.8698 5.8228 46 1 3.4294 5.5207 6.3501 47 1 4.8647 5.6488 5.3053 48 1 6.1435 4.0872 8.3853 49 1 0.5316 4.6905 3.4136 50 1 -0.3559 6.2150 3.1817 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274264071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:19 Heat of formation + Delta-G solvation = -64.809580 kcal Electronic energy + Delta-G solvation = -31580.272753 eV Core-core repulsion = 27416.385707 eV Total energy + Delta-G solvation = -4163.887045 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.37283 -40.13735 -38.38480 -36.29021 -36.01441 -35.47490 -33.12173 -32.31877 -30.96726 -30.27940 -29.19596 -27.81972 -27.07671 -26.16425 -24.52887 -23.76426 -22.50334 -21.86142 -20.54662 -19.88913 -18.43785 -17.89391 -17.38713 -16.74434 -16.69856 -16.26014 -15.88018 -15.59639 -15.43086 -15.05412 -14.65180 -14.28358 -14.23770 -14.02580 -13.95408 -13.69782 -13.32220 -13.19979 -13.12876 -12.84576 -12.79819 -12.65657 -12.44225 -12.24364 -12.17398 -11.69369 -11.61207 -11.48152 -11.35944 -11.22392 -10.96752 -10.82929 -10.68586 -10.27820 -10.17157 -9.91445 -9.88543 -9.31317 -9.13652 -8.98876 -8.41926 -8.35738 -8.13683 -6.00023 -4.03597 2.32785 2.86501 3.04964 3.17765 3.32103 3.39248 3.41150 3.44167 3.56398 4.13084 4.24762 4.36841 4.47220 4.63221 4.65640 4.77111 4.81920 4.99340 5.01966 5.06075 5.17010 5.18289 5.23019 5.35836 5.36336 5.41669 5.44964 5.47049 5.49304 5.52283 5.64324 5.65118 5.72049 5.80195 5.94487 6.00398 6.06197 6.35143 6.51265 6.65793 6.75940 6.83014 6.86919 7.56327 7.69775 7.74813 7.89686 7.98822 8.34445 8.45068 8.49468 9.02872 9.60466 11.11234 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013624 B = 0.003057 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.640303 B = 9156.293842 C = 9997.521029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.129 3.871 3 N -0.634 5.634 4 C 0.064 3.936 5 C 0.725 3.275 6 O -0.579 6.579 7 N -0.630 5.630 8 C 0.094 3.906 9 C -0.115 4.115 10 C 0.088 3.912 11 C 0.102 3.898 12 C 0.102 3.898 13 N -0.599 5.599 14 C 0.112 3.888 15 C 0.014 3.986 16 C -0.521 4.521 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.891 5.891 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.481 3.519 25 O -0.537 6.537 26 C 0.047 3.953 27 O -0.352 6.352 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.021 0.979 47 H 0.015 0.985 48 H 0.261 0.739 49 H 0.089 0.911 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.838 -3.272 -25.901 26.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.006 3.994 3 N -0.372 5.372 4 C -0.079 4.079 5 C 0.428 3.572 6 O -0.456 6.456 7 N -0.368 5.368 8 C -0.029 4.029 9 C -0.153 4.153 10 C 0.047 3.953 11 C -0.021 4.021 12 C -0.023 4.023 13 N -0.332 5.332 14 C -0.008 4.008 15 C -0.023 4.023 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.268 3.732 25 O -0.414 6.414 26 C -0.032 4.032 27 O -0.271 6.271 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.039 0.961 47 H 0.033 0.967 48 H 0.070 0.930 49 H 0.107 0.893 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.221 -3.682 -24.855 26.143 hybrid contribution 0.746 0.157 0.898 1.178 sum -6.475 -3.525 -23.957 25.066 Atomic orbital electron populations 1.22171 0.96137 1.02094 1.02295 1.21325 0.94086 0.80827 1.03123 1.46941 1.70952 1.14734 1.04615 1.22486 1.01324 0.98379 0.85701 1.15400 0.77782 0.80082 0.83929 1.90974 1.59098 1.65194 1.30288 1.47421 1.73142 1.08483 1.07802 1.22760 1.01262 0.90183 0.88684 1.22630 1.02113 0.97192 0.93368 1.22207 0.83300 0.93063 0.96762 1.22662 1.03315 0.88154 0.87962 1.21800 0.97362 0.99280 0.83824 1.47736 1.10935 1.62097 1.12383 1.21966 0.94169 0.97949 0.86724 1.19363 0.95272 0.93302 0.94411 1.21099 1.29792 0.93339 1.11722 0.92457 1.25004 0.96686 0.94803 0.97809 1.69986 1.42235 1.02833 1.37929 0.86507 0.79588 0.79345 0.82383 1.19680 1.20960 1.21033 1.20668 0.82824 0.79979 0.89736 1.90755 1.70980 1.53737 1.25959 1.22897 0.97240 1.01843 0.81192 1.87938 1.21172 1.87968 1.30025 0.92158 0.92803 0.91613 0.90708 0.89646 0.91813 0.90934 0.91001 0.90251 0.90535 0.88276 0.88314 0.89567 0.89591 0.88830 0.90399 0.91659 0.90424 0.96054 0.96676 0.92980 0.89339 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 37.16 0.38 -1.02 16 2 C 0.13 1.17 6.13 -4.05 -0.02 1.14 16 3 N -0.63 -6.55 2.87 -187.36 -0.54 -7.09 16 4 C 0.06 0.39 8.87 59.85 0.53 0.92 16 5 C 0.72 10.45 8.36 -86.92 -0.73 9.72 16 6 O -0.58 -11.07 16.17 5.28 0.09 -10.98 16 7 N -0.63 -7.80 3.33 -176.49 -0.59 -8.39 16 8 C 0.09 0.72 5.10 -2.95 -0.02 0.71 16 9 C -0.11 -0.85 6.12 -25.27 -0.15 -1.00 16 10 C 0.09 1.02 0.82 -89.87 -0.07 0.95 16 11 C 0.10 1.45 5.75 -2.89 -0.02 1.43 16 12 C 0.10 1.32 5.35 -4.66 -0.02 1.30 16 13 N -0.60 -10.66 2.83 -174.91 -0.49 -11.16 16 14 C 0.11 2.37 5.27 -4.04 -0.02 2.35 16 15 C 0.01 0.38 5.29 -27.88 -0.15 0.23 16 16 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 17 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 20 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.48 9.00 7.44 -11.61 -0.09 8.92 16 25 O -0.54 -12.36 16.33 5.56 0.09 -12.27 16 26 C 0.05 0.68 6.36 35.80 0.23 0.91 16 27 O -0.35 -4.47 10.43 -35.23 -0.37 -4.84 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.46 7.93 -51.93 -0.41 0.05 16 32 H 0.09 0.96 7.36 -51.93 -0.38 0.57 16 33 H 0.06 0.34 6.00 -51.93 -0.31 0.03 16 34 H 0.07 0.30 7.80 -51.93 -0.41 -0.11 16 35 H 0.07 0.39 5.17 -51.93 -0.27 0.12 16 36 H 0.08 0.53 5.70 -51.93 -0.30 0.23 16 37 H 0.08 0.44 5.88 -51.92 -0.31 0.14 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.57 8.01 -51.93 -0.42 0.16 16 40 H 0.09 1.30 7.79 -51.93 -0.40 0.89 16 41 H 0.09 1.47 5.89 -51.92 -0.31 1.16 16 42 H 0.09 1.21 7.82 -51.92 -0.41 0.80 16 43 H 0.08 0.84 8.13 -51.93 -0.42 0.42 16 44 H 0.06 1.24 8.04 -51.93 -0.42 0.82 16 45 H 0.08 1.78 7.22 -51.92 -0.37 1.40 16 46 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 49 H 0.09 1.30 6.63 -51.93 -0.34 0.96 16 50 H 0.13 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -38.13 390.17 -8.75 -46.88 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.97 Total: -1.35 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: -0.56 Total: 12.98 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.88 Total: -53.24 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.19 Total: -28.09 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.13 -8.75 -46.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274264071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.932 kcal (2) G-P(sol) polarization free energy of solvation -38.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds