Wall clock time and date at job start Wed Apr 1 2020 00:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47462 * 2 1 4 4 C 1.46499 * 120.00426 * 269.99967 * 3 2 1 5 5 C 1.34774 * 120.00008 * 90.00311 * 3 2 1 6 6 O 1.21596 * 120.00021 * 4.73868 * 5 3 2 7 7 N 1.34776 * 120.00437 * 184.74288 * 5 3 2 8 8 C 1.47086 * 125.62734 * 358.74180 * 7 5 3 9 9 C 1.54470 * 107.29792 * 178.99266 * 8 7 5 10 10 C 1.54309 * 102.86924 * 338.54360 * 9 8 7 11 11 C 1.47578 * 125.63134 * 178.72132 * 7 5 3 12 12 C 1.52028 * 110.68757 * 152.79818 * 10 9 8 13 13 N 1.46271 * 109.96325 * 170.21601 * 12 10 9 14 14 C 1.46500 * 118.81502 * 162.91542 * 13 12 10 15 15 C 1.52998 * 109.47241 * 269.99134 * 14 13 12 16 16 C 1.50698 * 109.47412 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99636 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00048 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99951 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99740 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47192 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47091 * 120.00052 * 20 18 16 23 23 H 1.48502 * 109.46785 * 239.99829 * 20 18 16 24 24 C 1.33837 * 122.36580 * 342.91200 * 13 12 10 25 25 O 1.21280 * 118.61477 * 182.99621 * 24 13 12 26 26 C 1.50266 * 122.76826 * 2.70987 * 24 13 12 27 27 O 1.42098 * 110.71738 * 276.30102 * 10 9 8 28 28 H 1.09000 * 109.46888 * 300.00209 * 1 2 3 29 29 H 1.09004 * 109.46858 * 59.99735 * 1 2 3 30 30 H 1.08998 * 109.47697 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46888 * 239.99791 * 2 1 3 32 32 H 1.09001 * 109.46906 * 120.00796 * 2 1 3 33 33 H 1.08995 * 109.47401 * 240.76438 * 4 3 2 34 34 H 1.09000 * 109.46944 * 0.76518 * 4 3 2 35 35 H 1.08998 * 109.47266 * 120.76244 * 4 3 2 36 36 H 1.09000 * 109.87871 * 59.56402 * 8 7 5 37 37 H 1.09008 * 109.87597 * 298.41540 * 8 7 5 38 38 H 1.09000 * 110.73009 * 220.19962 * 9 8 7 39 39 H 1.09000 * 110.73751 * 96.89113 * 9 8 7 40 40 H 1.08998 * 110.38175 * 84.45931 * 11 7 5 41 41 H 1.09008 * 110.37721 * 322.10425 * 11 7 5 42 42 H 1.09011 * 109.38270 * 290.36090 * 12 10 9 43 43 H 1.08997 * 109.39347 * 50.05298 * 12 10 9 44 44 H 1.08991 * 109.47344 * 29.99657 * 14 13 12 45 45 H 1.09009 * 109.47060 * 149.99813 * 14 13 12 46 46 H 1.09000 * 109.47258 * 300.00420 * 15 14 13 47 47 H 1.09004 * 109.46699 * 59.99925 * 15 14 13 48 48 H 0.97006 * 119.99604 * 180.02562 * 19 18 16 49 49 H 1.09002 * 109.39283 * 103.44035 * 26 24 13 50 50 H 1.09005 * 109.39585 * 223.25047 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 2.2431 2.0164 1.1672 6 8 2.1235 1.4172 2.2184 7 7 2.6003 3.3160 1.1693 8 6 2.8054 4.1501 -0.0247 9 6 3.1779 5.5675 0.4636 10 6 2.6288 5.5895 1.9056 11 6 2.8497 4.1371 2.3699 12 6 3.4222 6.5583 2.7676 13 7 2.7538 6.7434 4.0554 14 6 3.5123 7.3200 5.1683 15 6 4.1884 6.1987 5.9598 16 6 4.9682 6.7917 7.1049 17 1 4.9800 7.8614 7.2535 18 6 5.6665 5.9686 7.9628 19 7 5.6525 4.6662 7.7814 20 14 6.6325 6.7037 9.3826 21 1 6.4882 8.1816 9.3670 22 1 6.1109 6.1685 10.6658 23 1 8.0669 6.3454 9.2434 24 6 1.4741 6.4051 4.2537 25 8 0.9719 6.6389 5.3326 26 6 0.6316 5.7535 3.1937 27 8 1.2462 5.9177 1.9120 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5140 0.8899 33 1 3.3135 2.3539 -1.3324 34 1 2.0136 1.4087 -2.0971 35 1 1.6424 2.9666 -1.3205 36 1 1.8877 4.1895 -0.6115 37 1 3.6161 3.7409 -0.6278 38 1 2.6893 6.3267 -0.1470 39 1 4.2592 5.7051 0.4603 40 1 3.8741 4.0012 2.7166 41 1 2.1435 3.8795 3.1593 42 1 4.4229 6.1591 2.9334 43 1 3.4974 7.5186 2.2575 44 1 4.2713 7.9979 4.7780 45 1 2.8359 7.8698 5.8228 46 1 3.4294 5.5207 6.3501 47 1 4.8647 5.6488 5.3053 48 1 6.1435 4.0872 8.3853 49 1 0.5316 4.6905 3.4136 50 1 -0.3559 6.2150 3.1817 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274264071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:18 Heat of formation + Delta-G solvation = -93.228189 kcal Electronic energy + Delta-G solvation = -31581.505076 eV Core-core repulsion = 27416.385707 eV Total energy + Delta-G solvation = -4165.119369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.46958 -41.28027 -39.65116 -37.33935 -37.06252 -36.94291 -35.16363 -33.35107 -32.06469 -31.73511 -30.24061 -29.15605 -27.83930 -27.40230 -26.33231 -24.65489 -23.54280 -23.23130 -21.94881 -20.80010 -19.74465 -19.03704 -18.72240 -18.37257 -17.65551 -17.56625 -17.08563 -16.85160 -16.69628 -16.41476 -16.00659 -15.66708 -15.29537 -15.06035 -14.82062 -14.66969 -14.53495 -14.52456 -14.32514 -14.12342 -13.95187 -13.76660 -13.53607 -13.44427 -13.37923 -12.90717 -12.90259 -12.81663 -12.59081 -12.47120 -12.17458 -12.00183 -11.92833 -11.91251 -11.67264 -11.49429 -11.38143 -11.23190 -10.62910 -10.51209 -10.14789 -9.71730 -9.20663 -8.25104 -6.38175 1.35783 1.37850 1.39324 1.44169 1.52284 1.82312 2.00168 2.36588 2.40978 2.76079 3.08622 3.14561 3.27219 3.41551 3.63411 3.96760 4.03550 4.10601 4.12287 4.23157 4.25975 4.30301 4.35695 4.39751 4.43341 4.52502 4.54485 4.57724 4.64124 4.69618 4.74146 4.78653 4.88500 4.90929 4.99794 5.01770 5.08538 5.15713 5.17618 5.27915 5.41224 5.52381 5.62962 5.70264 5.78658 5.86212 6.12997 6.35990 6.77473 6.85093 6.99232 7.31912 7.42051 8.87098 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013624 B = 0.003057 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.640303 B = 9156.293842 C = 9997.521029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.124 3.876 3 N -0.628 5.628 4 C 0.055 3.945 5 C 0.711 3.289 6 O -0.645 6.645 7 N -0.630 5.630 8 C 0.086 3.914 9 C -0.101 4.101 10 C 0.091 3.909 11 C 0.101 3.899 12 C 0.094 3.906 13 N -0.600 5.600 14 C 0.128 3.872 15 C 0.027 3.973 16 C -0.541 4.541 17 H 0.068 0.932 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.971 3.029 21 H -0.256 1.256 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.472 3.528 25 O -0.591 6.591 26 C 0.063 3.937 27 O -0.339 6.339 28 H 0.023 0.977 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.067 0.933 41 H 0.042 0.958 42 H 0.094 0.906 43 H 0.118 0.882 44 H 0.097 0.903 45 H 0.056 0.944 46 H -0.033 1.033 47 H 0.001 0.999 48 H 0.263 0.737 49 H 0.079 0.921 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.888 -1.428 -29.892 30.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.001 3.999 3 N -0.365 5.365 4 C -0.085 4.085 5 C 0.414 3.586 6 O -0.527 6.527 7 N -0.368 5.368 8 C -0.034 4.034 9 C -0.139 4.139 10 C 0.050 3.950 11 C -0.024 4.024 12 C -0.028 4.028 13 N -0.331 5.331 14 C 0.006 3.994 15 C -0.011 4.011 16 C -0.579 4.579 17 H 0.086 0.914 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.795 3.205 21 H -0.180 1.180 22 H -0.210 1.210 23 H -0.198 1.198 24 C 0.260 3.740 25 O -0.473 6.473 26 C -0.017 4.017 27 O -0.257 6.257 28 H 0.042 0.958 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.132 0.868 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.112 0.888 43 H 0.136 0.864 44 H 0.115 0.885 45 H 0.075 0.925 46 H -0.014 1.014 47 H 0.019 0.981 48 H 0.072 0.928 49 H 0.097 0.903 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.253 -1.810 -28.975 29.697 hybrid contribution 0.462 -0.510 2.088 2.199 sum -5.790 -2.319 -26.887 27.601 Atomic orbital electron populations 1.22103 0.95557 1.02895 1.01346 1.21479 0.94573 0.80440 1.03359 1.47073 1.69653 1.15017 1.04805 1.22798 1.02448 0.99257 0.84035 1.15819 0.77811 0.80647 0.84335 1.90920 1.61842 1.66856 1.33038 1.47433 1.72479 1.08126 1.08723 1.23177 1.03414 0.89659 0.87160 1.22801 1.03640 0.97667 0.89772 1.22348 0.82729 0.90421 0.99527 1.22505 1.00921 0.90728 0.88241 1.22216 0.97104 1.01703 0.81817 1.47796 1.10706 1.61239 1.13373 1.21526 0.94293 0.96132 0.87440 1.19162 0.93608 0.93856 0.94518 1.21564 1.29845 0.94016 1.12485 0.91382 1.26050 0.97840 0.95116 1.00961 1.70144 1.43353 1.04574 1.39342 0.85311 0.78079 0.79157 0.77960 1.17991 1.21009 1.19810 1.21512 0.83292 0.79159 0.90014 1.90716 1.72272 1.55982 1.28331 1.22734 0.97445 1.00781 0.80703 1.87964 1.21753 1.87623 1.28361 0.95760 0.90856 0.90043 0.86819 0.92949 0.90552 0.88143 0.89816 0.88300 0.87659 0.85262 0.85956 0.91521 0.93910 0.88798 0.86415 0.88450 0.92517 1.01417 0.98096 0.92819 0.90338 0.82911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 10.24 71.98 0.74 -1.83 16 2 C 0.12 2.16 6.13 86.38 0.53 2.69 16 3 N -0.63 -12.26 2.87 -864.94 -2.49 -14.75 16 4 C 0.06 0.45 8.87 127.77 1.13 1.59 16 5 C 0.71 21.18 8.36 179.06 1.50 22.68 16 6 O -0.64 -27.00 16.17 -4.02 -0.07 -27.07 16 7 N -0.63 -15.39 3.33 -830.54 -2.77 -18.16 16 8 C 0.09 1.01 5.10 86.77 0.44 1.45 16 9 C -0.10 -1.04 6.12 31.54 0.19 -0.84 16 10 C 0.09 1.96 0.82 -10.31 -0.01 1.95 16 11 C 0.10 2.98 5.75 86.54 0.50 3.48 16 12 C 0.09 2.29 5.35 86.10 0.46 2.75 16 13 N -0.60 -21.76 2.83 -826.22 -2.34 -24.09 16 14 C 0.13 5.55 5.27 86.38 0.46 6.00 16 15 C 0.03 1.47 5.29 29.85 0.16 1.63 16 16 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 17 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 18 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 19 N -0.93 -59.60 13.29 21.45 0.28 -59.31 16 20 Si 0.97 45.61 29.54 68.60 2.03 47.64 16 21 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 24 C 0.47 18.43 7.44 87.67 0.65 19.09 16 25 O -0.59 -29.03 16.33 -3.03 -0.05 -29.08 16 26 C 0.06 1.82 6.36 71.10 0.45 2.28 16 27 O -0.34 -7.98 10.43 -148.98 -1.55 -9.53 16 28 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.11 1.09 7.93 -2.39 -0.02 1.07 16 32 H 0.05 1.26 7.36 -2.39 -0.02 1.25 16 33 H 0.08 0.46 6.00 -2.39 -0.01 0.45 16 34 H 0.10 0.32 7.80 -2.39 -0.02 0.30 16 35 H 0.08 0.52 5.17 -2.39 -0.01 0.51 16 36 H 0.10 0.83 5.70 -2.39 -0.01 0.82 16 37 H 0.11 0.70 5.88 -2.38 -0.01 0.68 16 38 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.12 0.77 8.01 -2.39 -0.02 0.75 16 40 H 0.07 2.18 7.79 -2.39 -0.02 2.16 16 41 H 0.04 1.62 5.89 -2.38 -0.01 1.61 16 42 H 0.09 2.33 7.82 -2.38 -0.02 2.31 16 43 H 0.12 2.04 8.13 -2.39 -0.02 2.02 16 44 H 0.10 3.58 8.04 -2.39 -0.02 3.56 16 45 H 0.06 2.70 7.22 -2.38 -0.02 2.68 16 46 H -0.03 -2.14 8.14 -2.39 -0.02 -2.16 16 47 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 48 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 49 H 0.08 2.51 6.63 -2.39 -0.02 2.49 16 50 H 0.15 3.69 8.14 -2.38 -0.02 3.67 16 Total: -1.00 -93.16 390.17 1.89 -91.27 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.94 Total: 11.26 kcal Atomic # 6 Polarization: 23.91 SS G_CDS: 7.89 Total: 31.81 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -7.30 Total: -116.31 kcal Atomic # 8 Polarization: -64.00 SS G_CDS: -1.67 Total: -65.67 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -93.16 1.89 -91.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274264071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.953 kcal (2) G-P(sol) polarization free energy of solvation -93.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds