Wall clock time and date at job start Tue Mar 31 2020 22:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99603 * 2 1 4 4 H 1.09000 * 109.47500 * 30.00366 * 3 2 1 5 5 C 1.53001 * 109.47220 * 270.00000 * 3 2 1 6 6 C 1.50699 * 109.46779 * 150.00347 * 3 2 1 7 7 O 1.21284 * 120.00439 * 4.99558 * 6 3 2 8 8 N 1.34780 * 119.99881 * 184.99865 * 6 3 2 9 9 C 1.47177 * 135.99421 * 359.63511 * 8 6 3 10 10 C 1.53186 * 87.73708 * 153.41349 * 9 8 6 11 11 C 1.47175 * 135.99726 * 179.97438 * 8 6 3 12 12 C 1.52608 * 114.02431 * 139.58351 * 10 9 8 13 13 C 1.53322 * 108.89132 * 186.63990 * 12 10 9 14 14 C 1.53022 * 109.17044 * 304.75075 * 13 12 10 15 15 N 1.46821 * 109.78935 * 61.06618 * 14 13 12 16 16 C 1.46901 * 111.00264 * 172.35525 * 15 14 13 17 17 C 1.50696 * 109.47275 * 190.51713 * 16 15 14 18 18 O 1.21288 * 119.99876 * 6.26803 * 17 16 15 19 19 N 1.34777 * 120.00215 * 186.27264 * 17 16 15 20 20 C 1.37097 * 120.00310 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99650 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00263 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99975 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00173 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47075 * 59.99934 * 24 22 20 26 26 H 1.48496 * 109.47133 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46871 * 300.00183 * 24 22 20 28 28 C 1.47043 * 111.14830 * 296.41495 * 15 14 13 29 29 H 1.08997 * 109.47242 * 60.00310 * 1 2 3 30 30 H 1.08997 * 109.47050 * 299.99033 * 1 2 3 31 31 H 1.09007 * 109.46557 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47183 * 300.00560 * 5 3 2 33 33 H 1.08998 * 109.46642 * 59.99938 * 5 3 2 34 34 H 1.08996 * 109.47054 * 180.02562 * 5 3 2 35 35 H 1.09003 * 113.48593 * 268.10556 * 9 8 6 36 36 H 1.08998 * 113.49049 * 38.61650 * 9 8 6 37 37 H 1.09005 * 113.48774 * 321.37393 * 11 8 6 38 38 H 1.08990 * 113.49462 * 91.88852 * 11 8 6 39 39 H 1.09003 * 109.56269 * 306.45757 * 12 10 9 40 40 H 1.08991 * 109.57097 * 66.81261 * 12 10 9 41 41 H 1.09000 * 109.52238 * 184.84385 * 13 12 10 42 42 H 1.09000 * 109.52591 * 64.66111 * 13 12 10 43 43 H 1.09003 * 109.42137 * 300.96652 * 14 13 12 44 44 H 1.09005 * 109.36766 * 181.12713 * 14 13 12 45 45 H 1.09005 * 109.46950 * 310.51900 * 16 15 14 46 46 H 1.08999 * 109.47294 * 70.51346 * 16 15 14 47 47 H 0.97006 * 119.99606 * 0.02562 * 19 17 16 48 48 H 0.97001 * 120.00001 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.50738 * 299.16623 * 28 15 14 50 50 H 1.09003 * 109.53362 * 179.07395 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3386 1.2639 0.7103 7 8 3.7897 0.2045 1.0914 8 7 4.0254 2.4041 0.9223 9 6 3.8279 3.8307 0.6194 10 6 4.7082 4.1477 1.8324 11 6 5.3045 2.7678 1.5529 12 6 5.6795 5.3036 1.6101 13 6 6.6088 5.4116 2.8248 14 6 5.7641 5.5511 4.0930 15 7 4.9148 4.3648 4.2575 16 6 4.2274 4.3852 5.5556 17 6 3.5766 3.0483 5.8005 18 8 3.7690 2.1302 5.0316 19 7 2.7805 2.8728 6.8739 20 6 2.1880 1.6567 7.0964 21 1 2.3594 0.8392 6.4118 22 6 1.3678 1.4757 8.2032 23 7 1.1596 2.4703 9.0365 24 14 0.5609 -0.1815 8.5068 25 1 1.6095 -1.2213 8.6634 26 1 -0.2576 -0.1144 9.7440 27 1 -0.3100 -0.5265 7.3546 28 6 3.9514 4.2447 3.1531 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 2.8828 1.0775 -1.9564 33 1 1.2567 1.8014 -1.9563 34 1 2.6612 2.7670 -1.4425 35 1 4.2681 4.1384 -0.3291 36 1 2.7950 4.1599 0.7323 37 1 5.5214 2.1972 2.4560 38 1 6.1420 2.7894 0.8557 39 1 6.2706 5.1163 0.7137 40 1 5.1212 6.2324 1.4938 41 1 7.2500 6.2864 2.7162 42 1 7.2240 4.5144 2.8937 43 1 5.1359 6.4384 4.0143 44 1 6.4219 5.6482 4.9567 45 1 4.9501 4.5878 6.3462 46 1 3.4657 5.1648 5.5512 47 1 2.6263 3.6073 7.4886 48 1 0.5867 2.3440 9.8090 49 1 3.3040 5.1215 3.1379 50 1 3.3469 3.3485 3.2926 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282953862.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:26 Heat of formation + Delta-G solvation = -65.953085 kcal Electronic energy + Delta-G solvation = -31344.993232 eV Core-core repulsion = 27181.056600 eV Total energy + Delta-G solvation = -4163.936631 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.06995 -39.17893 -38.25437 -37.24146 -36.39280 -33.92481 -32.93093 -31.97736 -31.16336 -30.11587 -27.63715 -26.89282 -26.55052 -26.07913 -24.71122 -23.58012 -22.96911 -21.40789 -19.34280 -19.12846 -18.37460 -17.80923 -17.25168 -16.75610 -16.10564 -15.93519 -15.54914 -15.44564 -15.09647 -14.79740 -14.55516 -14.43974 -14.00598 -13.88913 -13.66641 -13.56324 -13.34188 -13.09235 -12.84458 -12.71713 -12.54915 -12.40700 -12.25418 -11.99295 -11.87618 -11.71633 -11.46180 -11.29364 -11.23372 -11.02514 -10.94703 -10.61245 -10.42472 -10.39015 -10.19469 -10.15058 -9.97964 -9.41371 -9.30005 -8.55427 -8.39409 -7.92494 -7.83050 -6.37015 -3.77225 2.67809 2.82901 3.24579 3.29212 3.35253 3.77054 3.84286 3.96254 4.20798 4.36085 4.43942 4.64393 4.75415 4.82854 4.92505 4.97840 5.05719 5.13538 5.16262 5.25628 5.28494 5.31314 5.32077 5.33329 5.34650 5.48049 5.55136 5.62121 5.62404 5.63893 5.75657 5.79940 5.83704 5.84501 5.86622 5.94014 5.99326 6.09217 6.22119 6.25956 6.34154 6.50735 6.99049 7.27024 7.40219 7.60551 7.86000 8.12032 8.37882 8.67473 9.24057 9.59887 10.12485 10.80762 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007865 B = 0.004402 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3559.160197 B = 6358.942040 C = 9337.350235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.076 3.924 4 H 0.084 0.916 5 C -0.166 4.166 6 C 0.544 3.456 7 O -0.511 6.511 8 N -0.641 5.641 9 C 0.105 3.895 10 C -0.087 4.087 11 C 0.124 3.876 12 C -0.101 4.101 13 C -0.113 4.113 14 C 0.054 3.946 15 N -0.512 5.512 16 C 0.048 3.952 17 C 0.440 3.560 18 O -0.569 6.569 19 N -0.566 5.566 20 C -0.296 4.296 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.904 5.904 24 Si 0.928 3.072 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.082 3.918 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.029 0.971 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.045 0.955 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.028 0.972 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.782 10.983 -18.265 21.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.014 3.986 4 H 0.102 0.898 5 C -0.224 4.224 6 C 0.332 3.668 7 O -0.384 6.384 8 N -0.379 5.379 9 C -0.019 4.019 10 C -0.088 4.088 11 C 0.002 3.998 12 C -0.140 4.140 13 C -0.151 4.151 14 C -0.075 4.075 15 N -0.236 5.236 16 C -0.084 4.084 17 C 0.225 3.775 18 O -0.452 6.452 19 N -0.203 5.203 20 C -0.425 4.425 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.546 5.546 24 Si 0.755 3.245 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 C -0.045 4.045 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.047 0.953 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.063 0.937 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.046 0.954 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.308 8.941 -18.439 20.940 hybrid contribution -1.371 0.710 0.691 1.691 sum 2.937 9.651 -17.748 20.415 Atomic orbital electron populations 1.22886 0.80594 1.03284 1.00015 1.88044 1.19699 1.25095 1.94887 1.21811 0.93587 0.86870 0.96308 0.89773 1.22199 1.03150 1.01882 0.95177 1.19776 0.85659 0.82119 0.79210 1.90751 1.69339 1.28649 1.49674 1.49415 1.23188 1.05900 1.59368 1.23130 1.00826 0.80066 0.97887 1.21824 0.96687 0.95445 0.94835 1.22903 0.86030 0.92913 0.97999 1.21428 0.96877 0.97180 0.98466 1.21568 0.97603 1.02310 0.93650 1.22103 0.95984 0.90893 0.98480 1.61457 1.22598 1.38495 1.01056 1.21853 0.97723 0.97015 0.91778 1.19789 0.83892 0.89563 0.84234 1.90563 1.64399 1.42915 1.47295 1.41865 1.42003 1.13557 1.22920 1.19649 1.24018 0.90089 1.08791 0.88027 1.25220 0.97779 0.99089 0.95777 1.69607 1.38868 1.31600 1.14536 0.85953 0.79154 0.81814 0.77546 1.19859 1.21014 1.19962 1.21811 0.92938 1.02091 0.87682 0.94064 0.93518 0.89120 0.91231 0.91358 0.91097 0.89529 0.90602 0.88536 0.90543 0.91376 0.91588 0.91521 0.90767 0.95290 0.90818 0.89209 0.93713 0.77620 0.91933 0.95405 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.42 16 2 O -0.36 -5.68 9.89 -55.09 -0.54 -6.22 16 3 C 0.08 1.04 2.97 -27.88 -0.08 0.96 16 4 H 0.08 1.03 7.79 -51.93 -0.40 0.63 16 5 C -0.17 -1.62 9.45 37.16 0.35 -1.27 16 6 C 0.54 9.62 7.43 -10.98 -0.08 9.54 16 7 O -0.51 -11.79 17.28 -14.31 -0.25 -12.04 16 8 N -0.64 -9.36 3.44 -184.93 -0.64 -9.99 16 9 C 0.10 1.04 6.29 -8.03 -0.05 0.99 16 10 C -0.09 -1.01 0.94 -154.91 -0.15 -1.15 16 11 C 0.12 1.74 7.70 -8.18 -0.06 1.68 16 12 C -0.10 -0.87 5.23 -26.77 -0.14 -1.01 16 13 C -0.11 -1.07 6.08 -26.55 -0.16 -1.23 16 14 C 0.05 0.62 5.40 -3.86 -0.02 0.60 16 15 N -0.51 -8.07 4.36 -236.30 -1.03 -9.10 16 16 C 0.05 0.84 5.45 -4.98 -0.03 0.81 16 17 C 0.44 10.44 7.34 -10.99 -0.08 10.36 16 18 O -0.57 -15.61 14.26 5.55 0.08 -15.53 16 19 N -0.57 -14.50 5.29 -10.97 -0.06 -14.56 16 20 C -0.30 -8.43 9.68 -14.94 -0.14 -8.57 16 21 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.92 13.05 55.50 0.72 -24.19 16 24 Si 0.93 21.75 29.55 -169.99 -5.02 16.73 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 28 C 0.08 1.25 4.30 -3.99 -0.02 1.24 16 29 H 0.04 0.35 7.87 -51.93 -0.41 -0.06 16 30 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.54 7.87 -51.93 -0.41 0.13 16 34 H 0.07 0.56 6.81 -51.93 -0.35 0.20 16 35 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 36 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 37 H 0.10 1.79 8.11 -51.93 -0.42 1.37 16 38 H 0.08 0.88 8.01 -51.93 -0.42 0.47 16 39 H 0.07 0.48 8.02 -51.93 -0.42 0.06 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.82 7.97 -51.93 -0.41 0.40 16 45 H 0.09 1.43 7.95 -51.93 -0.41 1.02 16 46 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 47 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 48 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.10 2.05 5.90 -51.93 -0.31 1.75 16 LS Contribution 402.10 15.07 6.06 6.06 Total: -1.00 -36.60 402.10 -8.78 -45.39 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -8.44 Total: 8.59 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 0.33 Total: 14.88 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -1.00 Total: -57.85 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.71 Total: -33.79 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.60 -8.78 -45.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282953862.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.567 kcal (2) G-P(sol) polarization free energy of solvation -36.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds