Wall clock time and date at job start Tue Mar 31 2020 22:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99603 * 2 1 4 4 H 1.09000 * 109.47500 * 30.00366 * 3 2 1 5 5 C 1.53001 * 109.47220 * 270.00000 * 3 2 1 6 6 C 1.50699 * 109.46779 * 150.00347 * 3 2 1 7 7 O 1.21284 * 120.00439 * 4.99558 * 6 3 2 8 8 N 1.34780 * 119.99881 * 184.99865 * 6 3 2 9 9 C 1.47177 * 135.99421 * 359.63511 * 8 6 3 10 10 C 1.53186 * 87.73708 * 153.41349 * 9 8 6 11 11 C 1.47175 * 135.99726 * 179.97438 * 8 6 3 12 12 C 1.52608 * 114.02431 * 139.58351 * 10 9 8 13 13 C 1.53322 * 108.89132 * 186.63990 * 12 10 9 14 14 C 1.53022 * 109.17044 * 304.75075 * 13 12 10 15 15 N 1.46821 * 109.78935 * 61.06618 * 14 13 12 16 16 C 1.46901 * 111.00264 * 172.35525 * 15 14 13 17 17 C 1.50696 * 109.47275 * 190.51713 * 16 15 14 18 18 O 1.21288 * 119.99876 * 6.26803 * 17 16 15 19 19 N 1.34777 * 120.00215 * 186.27264 * 17 16 15 20 20 C 1.37097 * 120.00310 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99650 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00263 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99975 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00173 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47075 * 59.99934 * 24 22 20 26 26 H 1.48496 * 109.47133 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46871 * 300.00183 * 24 22 20 28 28 C 1.47043 * 111.14830 * 296.41495 * 15 14 13 29 29 H 1.08997 * 109.47242 * 60.00310 * 1 2 3 30 30 H 1.08997 * 109.47050 * 299.99033 * 1 2 3 31 31 H 1.09007 * 109.46557 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47183 * 300.00560 * 5 3 2 33 33 H 1.08998 * 109.46642 * 59.99938 * 5 3 2 34 34 H 1.08996 * 109.47054 * 180.02562 * 5 3 2 35 35 H 1.09003 * 113.48593 * 268.10556 * 9 8 6 36 36 H 1.08998 * 113.49049 * 38.61650 * 9 8 6 37 37 H 1.09005 * 113.48774 * 321.37393 * 11 8 6 38 38 H 1.08990 * 113.49462 * 91.88852 * 11 8 6 39 39 H 1.09003 * 109.56269 * 306.45757 * 12 10 9 40 40 H 1.08991 * 109.57097 * 66.81261 * 12 10 9 41 41 H 1.09000 * 109.52238 * 184.84385 * 13 12 10 42 42 H 1.09000 * 109.52591 * 64.66111 * 13 12 10 43 43 H 1.09003 * 109.42137 * 300.96652 * 14 13 12 44 44 H 1.09005 * 109.36766 * 181.12713 * 14 13 12 45 45 H 1.09005 * 109.46950 * 310.51900 * 16 15 14 46 46 H 1.08999 * 109.47294 * 70.51346 * 16 15 14 47 47 H 0.97006 * 119.99606 * 0.02562 * 19 17 16 48 48 H 0.97001 * 120.00001 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.50738 * 299.16623 * 28 15 14 50 50 H 1.09003 * 109.53362 * 179.07395 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3386 1.2639 0.7103 7 8 3.7897 0.2045 1.0914 8 7 4.0254 2.4041 0.9223 9 6 3.8279 3.8307 0.6194 10 6 4.7082 4.1477 1.8324 11 6 5.3045 2.7678 1.5529 12 6 5.6795 5.3036 1.6101 13 6 6.6088 5.4116 2.8248 14 6 5.7641 5.5511 4.0930 15 7 4.9148 4.3648 4.2575 16 6 4.2274 4.3852 5.5556 17 6 3.5766 3.0483 5.8005 18 8 3.7690 2.1302 5.0316 19 7 2.7805 2.8728 6.8739 20 6 2.1880 1.6567 7.0964 21 1 2.3594 0.8392 6.4118 22 6 1.3678 1.4757 8.2032 23 7 1.1596 2.4703 9.0365 24 14 0.5609 -0.1815 8.5068 25 1 1.6095 -1.2213 8.6634 26 1 -0.2576 -0.1144 9.7440 27 1 -0.3100 -0.5265 7.3546 28 6 3.9514 4.2447 3.1531 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 2.8828 1.0775 -1.9564 33 1 1.2567 1.8014 -1.9563 34 1 2.6612 2.7670 -1.4425 35 1 4.2681 4.1384 -0.3291 36 1 2.7950 4.1599 0.7323 37 1 5.5214 2.1972 2.4560 38 1 6.1420 2.7894 0.8557 39 1 6.2706 5.1163 0.7137 40 1 5.1212 6.2324 1.4938 41 1 7.2500 6.2864 2.7162 42 1 7.2240 4.5144 2.8937 43 1 5.1359 6.4384 4.0143 44 1 6.4219 5.6482 4.9567 45 1 4.9501 4.5878 6.3462 46 1 3.4657 5.1648 5.5512 47 1 2.6263 3.6073 7.4886 48 1 0.5867 2.3440 9.8090 49 1 3.3040 5.1215 3.1379 50 1 3.3469 3.3485 3.2926 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282953862.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:25 Heat of formation + Delta-G solvation = -94.840995 kcal Electronic energy + Delta-G solvation = -31346.245905 eV Core-core repulsion = 27181.056600 eV Total energy + Delta-G solvation = -4165.189305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.14312 -40.50760 -39.87822 -38.49034 -37.70011 -35.95728 -34.07942 -33.25934 -32.96452 -31.12559 -29.13321 -27.81524 -27.62395 -27.04283 -26.53670 -24.59189 -24.16590 -22.40539 -21.01087 -20.43543 -19.89760 -19.34295 -18.37146 -17.86534 -17.73834 -17.22094 -16.68210 -16.65344 -16.49624 -16.17831 -16.06090 -15.72389 -15.35344 -15.26100 -15.10065 -14.87784 -14.41434 -14.13307 -13.92729 -13.69233 -13.63316 -13.57642 -13.45449 -13.28726 -13.15543 -12.96498 -12.91008 -12.79022 -12.48777 -12.47604 -12.20092 -12.16218 -11.89860 -11.57707 -11.48816 -11.38504 -11.13371 -11.00752 -10.50580 -10.25752 -10.01287 -9.72362 -9.11446 -8.49536 -5.97497 1.34098 1.35653 1.46651 1.53462 1.60656 2.05735 2.25271 2.71274 2.82828 3.16991 3.20714 3.35540 3.53373 3.77238 3.81279 3.92429 3.98476 4.11312 4.26038 4.29757 4.33822 4.36686 4.42364 4.45713 4.46473 4.51041 4.54542 4.61871 4.67415 4.69822 4.76203 4.76630 4.81483 4.86908 4.89181 4.96274 5.06680 5.11389 5.18190 5.21389 5.37087 5.43979 5.55881 5.90163 6.02837 6.10959 6.33972 6.59887 6.71570 7.09669 7.12136 7.55838 8.14345 8.67736 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007865 B = 0.004402 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3559.160197 B = 6358.942040 C = 9337.350235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.076 3.924 4 H 0.097 0.903 5 C -0.154 4.154 6 C 0.526 3.474 7 O -0.590 6.590 8 N -0.646 5.646 9 C 0.113 3.887 10 C -0.076 4.076 11 C 0.115 3.885 12 C -0.092 4.092 13 C -0.112 4.112 14 C 0.051 3.949 15 N -0.536 5.536 16 C 0.061 3.939 17 C 0.437 3.563 18 O -0.613 6.613 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.068 0.932 22 C -0.008 4.008 23 N -0.918 5.918 24 Si 0.985 3.015 25 H -0.277 1.277 26 H -0.263 1.263 27 H -0.275 1.275 28 C 0.084 3.916 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.136 0.864 36 H 0.091 0.909 37 H 0.035 0.965 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.077 0.923 45 H 0.109 0.891 46 H 0.067 0.933 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.046 0.954 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.664 14.762 -20.342 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.320 6.320 3 C 0.016 3.984 4 H 0.115 0.885 5 C -0.211 4.211 6 C 0.316 3.684 7 O -0.470 6.470 8 N -0.381 5.381 9 C -0.008 4.008 10 C -0.077 4.077 11 C -0.008 4.008 12 C -0.129 4.129 13 C -0.150 4.150 14 C -0.076 4.076 15 N -0.261 5.261 16 C -0.070 4.070 17 C 0.224 3.776 18 O -0.498 6.498 19 N -0.214 5.214 20 C -0.461 4.461 21 H 0.086 0.914 22 C -0.208 4.208 23 N -0.559 5.559 24 Si 0.809 3.191 25 H -0.202 1.202 26 H -0.187 1.187 27 H -0.201 1.201 28 C -0.044 4.044 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.115 0.885 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.153 0.847 36 H 0.110 0.890 37 H 0.054 0.946 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.095 0.905 45 H 0.127 0.873 46 H 0.085 0.915 47 H 0.230 0.770 48 H 0.088 0.912 49 H 0.064 0.936 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.192 12.827 -20.516 24.556 hybrid contribution -1.276 -0.434 1.387 1.934 sum 2.915 12.393 -19.129 22.979 Atomic orbital electron populations 1.23087 0.78606 1.04250 1.01304 1.87993 1.22041 1.26758 1.95224 1.21997 0.91328 0.86503 0.98619 0.88520 1.22165 1.04537 1.02574 0.91854 1.20757 0.87083 0.81883 0.78680 1.90688 1.71467 1.31641 1.53235 1.49635 1.23105 1.07312 1.58042 1.23496 1.02021 0.76288 0.99019 1.21745 0.97200 0.95124 0.93665 1.23061 0.87296 0.93929 0.96490 1.21462 0.96143 0.96306 0.99036 1.21606 0.97581 1.02890 0.92910 1.22264 0.95691 0.89518 1.00103 1.61407 1.22966 1.41604 1.00147 1.21697 0.98424 0.93010 0.93855 1.20981 0.82503 0.91549 0.82542 1.90556 1.65451 1.45343 1.48449 1.41913 1.42761 1.12883 1.23846 1.19484 1.26333 0.90785 1.09473 0.91416 1.25903 0.97539 1.02371 0.94960 1.69650 1.38852 1.32778 1.14623 0.85115 0.78218 0.77722 0.78024 1.20223 1.18699 1.20076 1.21664 0.93217 0.99918 0.89580 0.90656 0.94172 0.88521 0.92487 0.88793 0.88498 0.84672 0.89021 0.94646 0.87453 0.88548 0.88954 0.88263 0.92696 0.93351 0.90484 0.87303 0.91537 0.77021 0.91232 0.93605 0.93844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 10.82 113.37 1.23 1.75 16 2 O -0.40 -13.24 9.89 -129.99 -1.29 -14.53 16 3 C 0.08 2.13 2.97 29.85 0.09 2.22 16 4 H 0.10 2.35 7.79 -2.39 -0.02 2.33 16 5 C -0.15 -2.65 9.45 71.98 0.68 -1.97 16 6 C 0.53 19.77 7.43 87.66 0.65 20.42 16 7 O -0.59 -30.09 17.28 15.95 0.28 -29.81 16 8 N -0.65 -19.11 3.44 -857.39 -2.95 -22.06 16 9 C 0.11 1.88 6.29 83.42 0.52 2.40 16 10 C -0.08 -1.61 0.94 -52.44 -0.05 -1.66 16 11 C 0.11 3.30 7.70 83.33 0.64 3.94 16 12 C -0.09 -1.11 5.23 30.57 0.16 -0.95 16 13 C -0.11 -1.70 6.08 30.71 0.19 -1.51 16 14 C 0.05 1.04 5.40 86.33 0.47 1.51 16 15 N -0.54 -16.75 4.36 -901.53 -3.93 -20.68 16 16 C 0.06 2.15 5.45 85.56 0.47 2.62 16 17 C 0.44 21.84 7.34 87.66 0.64 22.49 16 18 O -0.61 -36.45 14.26 -3.06 -0.04 -36.49 16 19 N -0.58 -30.89 5.29 -306.99 -1.62 -32.51 16 20 C -0.33 -19.88 9.68 84.04 0.81 -19.07 16 21 H 0.07 4.45 7.16 -2.91 -0.02 4.43 16 22 C -0.01 -0.44 5.50 84.92 0.47 0.03 16 23 N -0.92 -50.85 13.05 21.66 0.28 -50.56 16 24 Si 0.99 45.48 29.55 68.60 2.03 47.51 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 26 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 27 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 28 C 0.08 2.53 4.30 86.12 0.37 2.90 16 29 H 0.07 1.15 7.87 -2.39 -0.02 1.13 16 30 H 0.04 0.93 8.08 -2.39 -0.02 0.91 16 31 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.15 7.87 -2.39 -0.02 1.13 16 34 H 0.10 1.12 6.81 -2.39 -0.02 1.11 16 35 H 0.14 1.06 8.10 -2.39 -0.02 1.04 16 36 H 0.09 1.29 8.12 -2.39 -0.02 1.27 16 37 H 0.03 1.45 8.11 -2.38 -0.02 1.43 16 38 H 0.11 2.37 8.01 -2.39 -0.02 2.35 16 39 H 0.10 0.73 8.02 -2.39 -0.02 0.72 16 40 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.08 1.51 7.97 -2.38 -0.02 1.49 16 45 H 0.11 3.39 7.95 -2.38 -0.02 3.37 16 46 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 47 H 0.40 19.95 7.90 -92.70 -0.73 19.22 16 48 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 49 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.04 1.84 5.90 -2.39 -0.01 1.83 16 Total: -1.00 -91.71 402.10 0.29 -91.42 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: 0.20 Total: 32.59 kcal Atomic # 6 Polarization: 27.79 SS G_CDS: 7.34 Total: 35.12 kcal Atomic # 7 Polarization: -117.59 SS G_CDS: -8.22 Total: -125.81 kcal Atomic # 8 Polarization: -79.78 SS G_CDS: -1.05 Total: -80.83 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -91.71 0.29 -91.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282953862.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.422 kcal (2) G-P(sol) polarization free energy of solvation -91.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds