Wall clock time and date at job start Tue Mar 31 2020 22:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00211 * 2 1 4 4 H 1.09003 * 109.47005 * 329.99771 * 3 2 1 5 5 C 1.52996 * 109.47477 * 89.99594 * 3 2 1 6 6 C 1.50696 * 109.47579 * 210.00112 * 3 2 1 7 7 O 1.21283 * 119.99848 * 359.97438 * 6 3 2 8 8 N 1.34776 * 120.00530 * 179.97438 * 6 3 2 9 9 C 1.47668 * 134.45156 * 179.97438 * 8 6 3 10 10 C 1.53460 * 85.96089 * 155.72368 * 9 8 6 11 11 C 1.47669 * 134.44344 * 0.02562 * 8 6 3 12 12 C 1.52722 * 113.63646 * 268.90722 * 10 9 8 13 13 C 1.53297 * 108.90586 * 282.31868 * 12 10 9 14 14 C 1.53027 * 109.18594 * 304.58772 * 13 12 10 15 15 N 1.46825 * 109.74533 * 61.01240 * 14 13 12 16 16 C 1.46898 * 111.00093 * 172.38147 * 15 14 13 17 17 C 1.50700 * 109.46967 * 294.16386 * 16 15 14 18 18 O 1.21285 * 120.00097 * 359.97438 * 17 16 15 19 19 N 1.34782 * 119.99829 * 179.97438 * 17 16 15 20 20 C 1.37103 * 119.99561 * 179.97438 * 19 17 16 21 21 H 1.07991 * 120.00209 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99370 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00494 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99727 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47013 * 90.00205 * 24 22 20 26 26 H 1.48497 * 109.47015 * 210.00467 * 24 22 20 27 27 H 1.48502 * 109.46811 * 330.00142 * 24 22 20 28 28 C 1.47028 * 111.16403 * 296.45257 * 15 14 13 29 29 H 1.09005 * 109.47051 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47151 * 300.00138 * 1 2 3 31 31 H 1.08999 * 109.46656 * 60.00517 * 1 2 3 32 32 H 1.08997 * 109.47633 * 180.02562 * 5 3 2 33 33 H 1.09003 * 109.47447 * 300.00460 * 5 3 2 34 34 H 1.09003 * 109.46859 * 60.00087 * 5 3 2 35 35 H 1.09006 * 113.79173 * 41.46295 * 9 8 6 36 36 H 1.09000 * 113.79728 * 269.99360 * 9 8 6 37 37 H 1.09003 * 113.79236 * 90.01279 * 11 8 6 38 38 H 1.09001 * 113.79889 * 318.53586 * 11 8 6 39 39 H 1.08997 * 109.56096 * 42.14997 * 12 10 9 40 40 H 1.08998 * 109.56433 * 162.48796 * 12 10 9 41 41 H 1.09008 * 109.51568 * 64.50069 * 13 12 10 42 42 H 1.08996 * 109.52180 * 184.61471 * 13 12 10 43 43 H 1.08996 * 109.42417 * 181.09618 * 14 13 12 44 44 H 1.09001 * 109.42245 * 300.98733 * 14 13 12 45 45 H 1.08997 * 109.47075 * 54.16264 * 16 15 14 46 46 H 1.09002 * 109.47495 * 174.16440 * 16 15 14 47 47 H 0.96997 * 119.99813 * 0.02562 * 19 17 16 48 48 H 0.96998 * 119.99640 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.50088 * 299.35817 * 28 15 14 50 50 H 1.09002 * 109.50137 * 179.25342 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2176 1.7714 1.4424 6 6 3.3386 1.2639 -0.7104 7 8 3.7476 0.2191 -1.1709 8 7 4.0722 2.3878 -0.8340 9 6 5.3770 2.7089 -1.4464 10 6 4.8486 4.1453 -1.5583 11 6 3.8935 3.7910 -0.4103 12 6 4.1386 4.4354 -2.8790 13 6 5.1915 4.6474 -3.9728 14 6 6.1531 5.7552 -3.5373 15 7 6.8358 5.3609 -2.2987 16 6 7.8940 6.3193 -1.9527 17 6 8.9791 6.2681 -2.9973 18 8 8.8808 5.5078 -3.9371 19 7 10.0587 7.0673 -2.8871 20 6 11.0461 7.0204 -3.8371 21 1 10.9586 6.3434 -4.6739 22 6 12.1589 7.8447 -3.7237 23 7 12.2652 8.6688 -2.7057 24 14 13.5040 7.7813 -5.0185 25 1 13.2002 8.7568 -6.0960 26 1 14.8078 8.1225 -4.3949 27 1 13.5732 6.4139 -5.5938 28 6 5.8805 5.2085 -1.1915 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 2.6606 2.7673 1.4425 33 1 1.2568 1.8015 1.9563 34 1 2.8829 1.0775 1.9563 35 1 5.5420 2.2247 -2.4090 36 1 6.2209 2.6024 -0.7648 37 1 4.2964 4.0063 0.5793 38 1 2.8798 4.1669 -0.5497 39 1 3.5017 3.5915 -3.1440 40 1 3.5317 5.3350 -2.7772 41 1 5.7474 3.7225 -4.1274 42 1 4.6990 4.9357 -4.9015 43 1 6.8920 5.9227 -4.3209 44 1 5.5930 6.6743 -3.3648 45 1 7.4749 7.3246 -1.9132 46 1 8.3135 6.0620 -0.9801 47 1 10.1375 7.6751 -2.1352 48 1 13.0423 9.2440 -2.6265 49 1 5.3764 6.1582 -1.0124 50 1 6.4131 4.9032 -0.2908 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282953867.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:29 Heat of formation + Delta-G solvation = -70.718601 kcal Electronic energy + Delta-G solvation = -30207.854961 eV Core-core repulsion = 26043.711681 eV Total energy + Delta-G solvation = -4164.143280 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.20854 -39.43161 -38.42888 -37.50485 -36.40637 -33.92367 -32.92990 -32.24256 -31.20173 -30.42182 -27.61566 -27.21326 -26.65611 -26.42665 -24.73529 -23.80826 -22.94487 -21.52813 -19.57432 -19.17184 -18.40816 -17.84716 -17.53545 -17.08437 -16.37330 -16.12497 -15.72351 -15.59031 -15.11253 -14.96755 -14.63846 -14.50334 -14.23982 -14.07248 -13.80242 -13.72168 -13.42899 -13.25290 -13.13727 -12.81475 -12.71656 -12.47837 -12.31889 -12.23517 -11.99675 -11.83030 -11.54978 -11.48042 -11.42089 -11.05550 -10.95805 -10.66426 -10.44088 -10.41090 -10.36731 -10.25483 -10.21108 -9.64125 -9.46314 -8.87668 -8.42815 -7.97846 -7.85515 -6.41955 -3.82569 2.30240 2.49800 3.17685 3.26594 3.32525 3.44357 3.74757 3.90668 4.08443 4.17175 4.34647 4.44637 4.51180 4.62036 4.69264 4.87085 4.92365 4.95915 5.02179 5.05660 5.10545 5.11911 5.18075 5.24692 5.27301 5.28283 5.44285 5.49325 5.52861 5.57774 5.64478 5.67287 5.67896 5.76812 5.78687 5.88985 5.92360 5.99454 6.14343 6.27423 6.45560 6.53263 6.65760 7.27707 7.38835 7.48651 7.55273 7.99369 8.06523 8.61755 9.18295 9.54533 10.06301 10.75753 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029838 B = 0.001985 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.185280 B =14101.365237 C =14159.939220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.075 3.925 4 H 0.085 0.915 5 C -0.171 4.171 6 C 0.535 3.465 7 O -0.521 6.521 8 N -0.643 5.643 9 C 0.133 3.867 10 C -0.084 4.084 11 C 0.106 3.894 12 C -0.094 4.094 13 C -0.112 4.112 14 C 0.053 3.947 15 N -0.512 5.512 16 C 0.047 3.953 17 C 0.444 3.556 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.269 1.269 28 C 0.070 3.930 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.103 0.897 44 H 0.021 0.979 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.037 0.963 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.465 -5.628 9.476 25.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.279 6.279 3 C 0.013 3.987 4 H 0.102 0.898 5 C -0.228 4.228 6 C 0.323 3.677 7 O -0.395 6.395 8 N -0.381 5.381 9 C 0.011 3.989 10 C -0.086 4.086 11 C -0.017 4.017 12 C -0.132 4.132 13 C -0.150 4.150 14 C -0.075 4.075 15 N -0.237 5.237 16 C -0.084 4.084 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.059 4.059 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.122 0.878 44 H 0.039 0.961 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.055 0.945 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.945 -7.416 8.567 25.591 hybrid contribution 0.165 1.525 0.237 1.552 sum -22.780 -5.891 8.804 25.122 Atomic orbital electron populations 1.22883 0.80575 1.03304 0.99992 1.88051 1.19694 1.25202 1.94919 1.21845 0.93449 0.86698 0.96664 0.89771 1.22249 1.03363 1.02225 0.94996 1.20005 0.85745 0.82231 0.79756 1.90741 1.71740 1.29203 1.47842 1.50042 1.22039 1.07939 1.58057 1.23155 0.85156 0.91652 0.98903 1.22090 0.95505 0.95354 0.95613 1.23347 1.00454 0.79439 0.98484 1.21344 0.97487 1.01282 0.93042 1.21550 0.96024 1.00419 0.96988 1.22238 0.96900 0.94785 0.93569 1.61523 1.11188 1.48316 1.02637 1.21829 0.93028 0.94173 0.99401 1.19735 0.84307 0.84610 0.88459 1.90493 1.79137 1.41579 1.34771 1.41874 1.17764 1.35799 1.24726 1.19691 0.97468 1.21141 1.04430 0.87915 1.25252 0.98823 0.96045 0.97837 1.69610 1.30745 1.24232 1.29787 0.85869 0.79614 0.78831 0.80052 1.20470 1.20954 1.19407 1.21984 0.92671 0.96557 0.94649 0.89080 0.93840 0.93828 0.90784 0.91270 0.91080 0.89586 0.89212 0.89169 0.89950 0.91752 0.91700 0.90728 0.91593 0.87842 0.96092 0.93516 0.89363 0.77533 0.91913 0.94479 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.29 16 2 O -0.36 -4.06 9.88 -55.14 -0.54 -4.60 16 3 C 0.07 0.70 2.97 -27.89 -0.08 0.62 16 4 H 0.08 0.59 7.79 -51.93 -0.40 0.18 16 5 C -0.17 -1.16 9.40 37.16 0.35 -0.81 16 6 C 0.53 6.89 7.46 -10.99 -0.08 6.81 16 7 O -0.52 -9.32 17.23 -14.35 -0.25 -9.56 16 8 N -0.64 -6.82 3.41 -180.50 -0.62 -7.44 16 9 C 0.13 1.54 7.86 -3.17 -0.02 1.51 16 10 C -0.08 -0.81 0.86 -154.45 -0.13 -0.94 16 11 C 0.11 0.75 6.02 -3.16 -0.02 0.73 16 12 C -0.09 -0.93 5.12 -26.72 -0.14 -1.06 16 13 C -0.11 -1.40 6.04 -26.56 -0.16 -1.56 16 14 C 0.05 0.79 5.05 -3.85 -0.02 0.77 16 15 N -0.51 -7.67 4.41 -236.24 -1.04 -8.71 16 16 C 0.05 0.78 5.45 -4.98 -0.03 0.75 16 17 C 0.44 10.03 7.44 -10.98 -0.08 9.95 16 18 O -0.58 -14.93 13.92 5.55 0.08 -14.86 16 19 N -0.56 -13.91 5.29 -10.96 -0.06 -13.97 16 20 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 24 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 28 C 0.07 0.75 4.61 -3.94 -0.02 0.73 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.21 7.87 -51.93 -0.41 -0.20 16 31 H 0.04 0.25 8.08 -51.93 -0.42 -0.17 16 32 H 0.07 0.39 6.12 -51.93 -0.32 0.07 16 33 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.16 7.67 -51.93 -0.40 0.76 16 36 H 0.09 1.03 8.04 -51.93 -0.42 0.62 16 37 H 0.09 0.49 7.90 -51.93 -0.41 0.08 16 38 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 39 H 0.06 0.65 8.01 -51.93 -0.42 0.23 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 1.07 7.71 -51.92 -0.40 0.67 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.10 1.96 5.77 -51.93 -0.30 1.66 16 44 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 45 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 46 H 0.09 1.31 8.03 -51.93 -0.42 0.89 16 47 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 50 H 0.08 0.76 8.00 -51.93 -0.42 0.35 16 LS Contribution 399.63 15.07 6.02 6.02 Total: -1.00 -34.52 399.63 -8.63 -43.16 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -8.34 Total: 6.62 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 0.42 Total: 10.97 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.99 Total: -53.61 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.71 Total: -29.02 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.52 -8.63 -43.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282953867.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.562 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds