Wall clock time and date at job start Tue Mar 31 2020 22:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00309 * 2 1 4 4 C 1.52998 * 109.47349 * 124.99981 * 3 2 1 5 5 O 1.42905 * 109.47291 * 180.02562 * 4 3 2 6 6 C 1.42902 * 113.99952 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.47315 * 29.99205 * 6 5 4 8 8 C 1.53000 * 109.46845 * 269.99566 * 6 5 4 9 9 C 1.50695 * 109.47121 * 149.99604 * 6 5 4 10 10 O 1.21284 * 120.00042 * 12.26985 * 9 6 5 11 11 N 1.34774 * 119.99964 * 192.26265 * 9 6 5 12 12 C 1.47427 * 125.64877 * 5.31627 * 11 9 6 13 13 C 1.54904 * 104.83271 * 204.08746 * 12 11 9 14 14 C 1.55165 * 101.57979 * 322.98498 * 13 12 11 15 15 H 1.08997 * 110.72042 * 277.13558 * 14 13 12 16 16 N 1.46899 * 110.71824 * 154.04410 * 14 13 12 17 17 C 1.46899 * 111.00201 * 86.45304 * 16 14 13 18 18 C 1.50698 * 109.47358 * 179.97438 * 17 16 14 19 19 O 1.21301 * 120.00182 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00343 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00585 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99714 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00339 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99956 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99959 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47236 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46933 * 119.99944 * 25 23 21 28 28 H 1.48490 * 109.47298 * 239.99940 * 25 23 21 29 29 C 1.47023 * 125.65073 * 184.99533 * 11 9 6 30 30 H 1.07998 * 119.99747 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00239 * 179.97438 * 1 2 3 32 32 H 1.08007 * 120.00014 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.46875 * 4.99695 * 3 2 1 34 34 H 1.09004 * 109.47522 * 244.99903 * 3 2 1 35 35 H 1.09003 * 109.47366 * 60.00014 * 4 3 2 36 36 H 1.09001 * 109.46993 * 299.99940 * 4 3 2 37 37 H 1.08997 * 109.47463 * 175.16932 * 8 6 5 38 38 H 1.09000 * 109.47109 * 295.17274 * 8 6 5 39 39 H 1.09007 * 109.47121 * 55.17133 * 8 6 5 40 40 H 1.09004 * 110.36115 * 322.92377 * 12 11 9 41 41 H 1.09001 * 110.36893 * 85.13707 * 12 11 9 42 42 H 1.08996 * 111.00890 * 81.06048 * 13 12 11 43 43 H 1.08997 * 111.00547 * 204.91647 * 13 12 11 44 44 H 1.00909 * 111.00484 * 322.49973 * 16 14 13 45 45 H 1.08997 * 109.47448 * 300.00487 * 17 16 14 46 46 H 1.09006 * 109.46921 * 59.99960 * 17 16 14 47 47 H 0.97005 * 119.99605 * 0.02562 * 20 18 17 48 48 H 0.97000 * 119.99867 * 179.97438 * 24 23 21 49 49 H 1.08999 * 109.88505 * 298.40366 * 29 11 9 50 50 H 1.09004 * 109.87850 * 59.56495 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 8 3.7492 2.5708 1.1819 6 6 4.6887 2.6995 2.2510 7 1 5.0656 1.7140 2.5242 8 6 4.0008 3.3356 3.4606 9 6 5.8358 3.5714 1.8095 10 8 5.7492 4.2145 0.7848 11 7 6.9578 3.6365 2.5532 12 6 7.2408 2.8293 3.7540 13 6 8.2725 3.6606 4.5566 14 6 9.1353 4.2683 3.4191 15 1 9.8939 3.5585 3.0892 16 7 9.7573 5.5261 3.8540 17 6 11.0316 5.2736 4.5399 18 6 11.6390 6.5840 4.9698 19 8 11.0664 7.6259 4.7290 20 7 12.8184 6.5985 5.6219 21 6 13.3712 7.7907 6.0126 22 1 12.8614 8.7183 5.7981 23 6 14.5874 7.8055 6.6844 24 7 15.2075 6.6768 6.9458 25 14 15.3410 9.4300 7.2160 26 1 14.4514 10.5462 6.8058 27 1 15.5007 9.4420 8.6924 28 1 16.6695 9.5934 6.5731 29 6 8.1052 4.5195 2.2977 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6214 1.4026 -0.9314 35 1 3.7400 0.5064 1.0921 36 1 2.4773 1.2356 2.1130 37 1 4.6921 3.3555 4.3030 38 1 3.6997 4.3537 3.2135 39 1 3.1202 2.7509 3.7269 40 1 6.3316 2.6868 4.3381 41 1 7.6647 1.8655 3.4720 42 1 7.7797 4.4430 5.1337 43 1 8.8728 3.0200 5.2025 44 1 9.1300 6.0561 4.4403 45 1 10.8553 4.6496 5.4161 46 1 11.7144 4.7623 3.8613 47 1 13.2765 5.7653 5.8142 48 1 16.0567 6.6872 7.4145 49 1 8.5450 4.2848 1.3284 50 1 7.7835 5.5608 2.3187 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317056165.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:25 Heat of formation + Delta-G solvation = -91.685957 kcal Electronic energy + Delta-G solvation = -28604.241851 eV Core-core repulsion = 24439.189358 eV Total energy + Delta-G solvation = -4165.052493 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.55061 -38.90060 -38.20893 -37.44815 -35.51235 -34.82880 -33.83797 -32.23445 -31.26020 -30.52756 -29.51043 -28.87256 -26.34733 -24.98573 -23.87546 -23.41704 -22.87200 -20.98820 -20.35668 -19.59717 -19.30813 -17.95718 -17.66971 -17.24495 -16.58773 -16.21227 -15.83472 -15.68752 -15.44878 -15.28201 -14.76410 -14.54836 -14.16405 -14.08549 -13.78132 -13.72722 -13.63528 -13.23270 -13.08071 -13.01891 -12.67650 -12.59690 -12.41884 -12.31733 -12.13242 -11.69374 -11.64285 -11.57952 -11.54213 -11.49230 -11.41943 -11.08199 -10.98902 -10.35671 -10.31142 -10.24625 -9.85012 -9.72759 -9.54465 -8.86224 -8.52374 -8.13222 -7.98797 -6.44353 -3.85071 1.73770 2.38772 2.40780 3.14955 3.25980 3.33249 3.39916 3.86975 3.97453 4.09698 4.19708 4.34727 4.41803 4.43751 4.53792 4.60126 4.63176 4.73872 4.81424 4.87021 4.92387 4.98260 5.08185 5.10575 5.15575 5.23359 5.25651 5.27946 5.34833 5.49339 5.53768 5.58159 5.67788 5.70221 5.71187 5.83153 5.88938 5.92563 6.03716 6.12819 6.23012 6.25064 6.68697 7.10824 7.25173 7.53322 7.53815 7.96299 8.03867 8.58273 9.15628 9.51277 10.02512 10.73391 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.045908 B = 0.001475 C = 0.001464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.773240 B =18972.068461 C =19121.370977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.154 4.154 3 C -0.093 4.093 4 C 0.064 3.936 5 O -0.358 6.358 6 C 0.078 3.922 7 H 0.082 0.918 8 C -0.172 4.172 9 C 0.529 3.471 10 O -0.516 6.516 11 N -0.618 5.618 12 C 0.096 3.904 13 C -0.168 4.168 14 C 0.081 3.919 15 H 0.095 0.905 16 N -0.657 5.657 17 C 0.053 3.947 18 C 0.439 3.561 19 O -0.582 6.582 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.117 3.883 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.354 0.646 45 H 0.046 0.954 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.074 0.926 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.128 -18.724 -5.937 30.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.173 4.173 3 C -0.131 4.131 4 C -0.013 4.013 5 O -0.276 6.276 6 C 0.016 3.984 7 H 0.100 0.900 8 C -0.229 4.229 9 C 0.316 3.684 10 O -0.390 6.390 11 N -0.355 5.355 12 C -0.028 4.028 13 C -0.208 4.208 14 C -0.031 4.031 15 H 0.113 0.887 16 N -0.289 5.289 17 C -0.080 4.080 18 C 0.225 3.775 19 O -0.467 6.467 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.122 0.878 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.006 4.006 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.174 0.826 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.183 -17.394 -7.371 29.906 hybrid contribution 0.559 -0.508 1.579 1.751 sum -22.624 -17.902 -5.792 29.426 Atomic orbital electron populations 1.23920 0.95883 1.02118 1.00473 1.22799 0.96022 0.97958 1.00477 1.20643 0.97902 0.95946 0.98570 1.22556 0.94137 0.85982 0.98588 1.88041 1.53714 1.37297 1.48549 1.21803 0.89187 0.98825 0.88539 0.89978 1.22266 1.01426 1.02843 0.96384 1.19981 0.81931 0.83076 0.83393 1.90746 1.80437 1.44376 1.23426 1.48409 1.17163 1.41223 1.28715 1.22430 0.99465 0.94783 0.86085 1.23609 0.97959 1.00715 0.98542 1.22606 0.95070 0.91888 0.93545 0.88652 1.59941 1.05692 1.16469 1.46821 1.21684 0.91913 0.97018 0.97379 1.19791 0.83693 0.90034 0.84031 1.90541 1.62891 1.33617 1.59603 1.41859 1.18366 1.09686 1.50033 1.19763 1.03020 0.86884 1.33221 0.87842 1.25254 0.96618 0.98697 0.97299 1.69615 1.17171 1.25890 1.41624 0.85806 0.78872 0.81609 0.78108 1.19181 1.20778 1.20719 1.21912 0.85082 0.95024 0.98540 0.88366 0.88266 0.87163 0.90442 0.89841 0.93041 0.92953 0.90659 0.90891 0.91049 0.90370 0.90936 0.90030 0.89436 0.82552 0.93630 0.89438 0.77471 0.91917 0.90766 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.95 14.32 29.02 0.42 -0.53 16 2 C -0.15 -0.85 9.52 -36.03 -0.34 -1.20 16 3 C -0.09 -0.64 6.03 -27.89 -0.17 -0.81 16 4 C 0.06 0.46 5.73 37.16 0.21 0.67 16 5 O -0.36 -3.88 9.55 -54.84 -0.52 -4.40 16 6 C 0.08 0.71 2.42 -27.89 -0.07 0.64 16 7 H 0.08 0.53 7.52 -51.93 -0.39 0.14 16 8 C -0.17 -1.24 9.37 37.16 0.35 -0.89 16 9 C 0.53 6.69 7.15 -10.99 -0.08 6.61 16 10 O -0.52 -8.95 16.88 -14.05 -0.24 -9.19 16 11 N -0.62 -6.60 3.33 -170.52 -0.57 -7.16 16 12 C 0.10 0.68 6.50 -2.53 -0.02 0.67 16 13 C -0.17 -1.39 6.63 -24.58 -0.16 -1.55 16 14 C 0.08 0.88 3.22 -65.87 -0.21 0.67 16 15 H 0.10 0.96 7.89 -51.93 -0.41 0.55 16 16 N -0.66 -9.82 5.92 -106.05 -0.63 -10.45 16 17 C 0.05 0.85 6.02 -4.98 -0.03 0.82 16 18 C 0.44 10.04 7.82 -10.99 -0.09 9.96 16 19 O -0.58 -15.57 15.78 5.54 0.09 -15.48 16 20 N -0.56 -13.91 5.29 -10.96 -0.06 -13.96 16 21 C -0.30 -8.24 9.68 -14.94 -0.14 -8.39 16 22 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.14 13.05 55.50 0.72 -23.42 16 25 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 C 0.12 1.42 6.64 -3.06 -0.02 1.40 16 30 H 0.10 0.47 7.84 -52.49 -0.41 0.06 16 31 H 0.10 0.39 8.06 -52.49 -0.42 -0.03 16 32 H 0.11 0.50 8.06 -52.48 -0.42 0.07 16 33 H 0.08 0.55 7.79 -51.93 -0.40 0.15 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.31 8.08 -51.93 -0.42 -0.11 16 36 H 0.05 0.31 7.79 -51.93 -0.40 -0.10 16 37 H 0.07 0.44 5.98 -51.93 -0.31 0.13 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.40 7.79 -51.93 -0.40 0.00 16 40 H 0.08 0.41 5.49 -51.93 -0.28 0.13 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.72 7.82 -51.93 -0.41 0.31 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.35 5.51 8.01 -39.29 -0.31 5.19 16 45 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 46 H 0.09 1.31 8.09 -51.93 -0.42 0.89 16 47 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 48 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 49 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 LS Contribution 413.63 15.07 6.23 6.23 Total: -1.00 -34.53 413.63 -8.65 -43.18 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -8.21 Total: 10.25 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -0.45 Total: 8.58 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.53 Total: -54.99 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.67 Total: -29.07 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.53 -8.65 -43.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317056165.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.502 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds