Wall clock time and date at job start Tue Mar 31 2020 22:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00309 * 2 1 4 4 C 1.52998 * 109.47349 * 124.99981 * 3 2 1 5 5 O 1.42905 * 109.47291 * 180.02562 * 4 3 2 6 6 C 1.42902 * 113.99952 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.47315 * 29.99205 * 6 5 4 8 8 C 1.53000 * 109.46845 * 269.99566 * 6 5 4 9 9 C 1.50695 * 109.47121 * 149.99604 * 6 5 4 10 10 O 1.21284 * 120.00042 * 12.26985 * 9 6 5 11 11 N 1.34774 * 119.99964 * 192.26265 * 9 6 5 12 12 C 1.47427 * 125.64877 * 5.31627 * 11 9 6 13 13 C 1.54904 * 104.83271 * 204.08746 * 12 11 9 14 14 C 1.55165 * 101.57979 * 322.98498 * 13 12 11 15 15 H 1.08997 * 110.72042 * 277.13558 * 14 13 12 16 16 N 1.46899 * 110.71824 * 154.04410 * 14 13 12 17 17 C 1.46899 * 111.00201 * 86.45304 * 16 14 13 18 18 C 1.50698 * 109.47358 * 179.97438 * 17 16 14 19 19 O 1.21301 * 120.00182 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00343 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00585 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99714 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00339 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99956 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99959 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47236 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46933 * 119.99944 * 25 23 21 28 28 H 1.48490 * 109.47298 * 239.99940 * 25 23 21 29 29 C 1.47023 * 125.65073 * 184.99533 * 11 9 6 30 30 H 1.07998 * 119.99747 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00239 * 179.97438 * 1 2 3 32 32 H 1.08007 * 120.00014 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.46875 * 4.99695 * 3 2 1 34 34 H 1.09004 * 109.47522 * 244.99903 * 3 2 1 35 35 H 1.09003 * 109.47366 * 60.00014 * 4 3 2 36 36 H 1.09001 * 109.46993 * 299.99940 * 4 3 2 37 37 H 1.08997 * 109.47463 * 175.16932 * 8 6 5 38 38 H 1.09000 * 109.47109 * 295.17274 * 8 6 5 39 39 H 1.09007 * 109.47121 * 55.17133 * 8 6 5 40 40 H 1.09004 * 110.36115 * 322.92377 * 12 11 9 41 41 H 1.09001 * 110.36893 * 85.13707 * 12 11 9 42 42 H 1.08996 * 111.00890 * 81.06048 * 13 12 11 43 43 H 1.08997 * 111.00547 * 204.91647 * 13 12 11 44 44 H 1.00909 * 111.00484 * 322.49973 * 16 14 13 45 45 H 1.08997 * 109.47448 * 300.00487 * 17 16 14 46 46 H 1.09006 * 109.46921 * 59.99960 * 17 16 14 47 47 H 0.97005 * 119.99605 * 0.02562 * 20 18 17 48 48 H 0.97000 * 119.99867 * 179.97438 * 24 23 21 49 49 H 1.08999 * 109.88505 * 298.40366 * 29 11 9 50 50 H 1.09004 * 109.87850 * 59.56495 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 8 3.7492 2.5708 1.1819 6 6 4.6887 2.6995 2.2510 7 1 5.0656 1.7140 2.5242 8 6 4.0008 3.3356 3.4606 9 6 5.8358 3.5714 1.8095 10 8 5.7492 4.2145 0.7848 11 7 6.9578 3.6365 2.5532 12 6 7.2408 2.8293 3.7540 13 6 8.2725 3.6606 4.5566 14 6 9.1353 4.2683 3.4191 15 1 9.8939 3.5585 3.0892 16 7 9.7573 5.5261 3.8540 17 6 11.0316 5.2736 4.5399 18 6 11.6390 6.5840 4.9698 19 8 11.0664 7.6259 4.7290 20 7 12.8184 6.5985 5.6219 21 6 13.3712 7.7907 6.0126 22 1 12.8614 8.7183 5.7981 23 6 14.5874 7.8055 6.6844 24 7 15.2075 6.6768 6.9458 25 14 15.3410 9.4300 7.2160 26 1 14.4514 10.5462 6.8058 27 1 15.5007 9.4420 8.6924 28 1 16.6695 9.5934 6.5731 29 6 8.1052 4.5195 2.2977 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6214 1.4026 -0.9314 35 1 3.7400 0.5064 1.0921 36 1 2.4773 1.2356 2.1130 37 1 4.6921 3.3555 4.3030 38 1 3.6997 4.3537 3.2135 39 1 3.1202 2.7509 3.7269 40 1 6.3316 2.6868 4.3381 41 1 7.6647 1.8655 3.4720 42 1 7.7797 4.4430 5.1337 43 1 8.8728 3.0200 5.2025 44 1 9.1300 6.0561 4.4403 45 1 10.8553 4.6496 5.4161 46 1 11.7144 4.7623 3.8613 47 1 13.2765 5.7653 5.8142 48 1 16.0567 6.6872 7.4145 49 1 8.5450 4.2848 1.3284 50 1 7.7835 5.5608 2.3187 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317056165.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:24 Heat of formation + Delta-G solvation = -116.833799 kcal Electronic energy + Delta-G solvation = -28605.332343 eV Core-core repulsion = 24439.189358 eV Total energy + Delta-G solvation = -4166.142985 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.42483 -40.20234 -39.40611 -38.45185 -36.21222 -36.00957 -35.57875 -33.28183 -32.93665 -31.39122 -30.12065 -29.73007 -27.83693 -26.10662 -25.19373 -24.06799 -23.51994 -21.86998 -21.12439 -20.83874 -20.31894 -19.91227 -18.49685 -18.04051 -17.73773 -17.27378 -16.81901 -16.67056 -16.44613 -16.32863 -16.07059 -15.82300 -15.49604 -15.20162 -14.81022 -14.74167 -14.31979 -14.13324 -14.09305 -13.85778 -13.68708 -13.49582 -13.47839 -13.26785 -13.16615 -13.05357 -12.93576 -12.63990 -12.42544 -12.36698 -12.24394 -12.12568 -12.11325 -11.98026 -11.73648 -11.50435 -11.05724 -10.55121 -10.34284 -10.26852 -9.99882 -9.75953 -9.30084 -8.46148 -5.94267 1.32060 1.36979 1.42834 1.46455 1.56275 1.62656 2.07135 2.29981 2.74748 2.92967 3.21715 3.34417 3.44598 3.63651 3.80928 3.84601 3.91605 4.05028 4.07980 4.14555 4.23633 4.24806 4.31828 4.37941 4.43837 4.44047 4.50140 4.53154 4.63314 4.69655 4.73808 4.81526 4.83354 4.88870 5.00720 5.03350 5.08570 5.11002 5.16260 5.23226 5.42482 5.72974 5.85112 5.90222 6.08429 6.11349 6.35398 6.42422 6.61794 7.04555 7.14445 7.58184 8.14119 8.71301 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.045908 B = 0.001475 C = 0.001464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.773240 B =18972.068461 C =19121.370977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 C -0.094 4.094 4 C 0.061 3.939 5 O -0.393 6.393 6 C 0.082 3.918 7 H 0.118 0.882 8 C -0.166 4.166 9 C 0.519 3.481 10 O -0.579 6.579 11 N -0.614 5.614 12 C 0.094 3.906 13 C -0.160 4.160 14 C 0.086 3.914 15 H 0.113 0.887 16 N -0.678 5.678 17 C 0.070 3.930 18 C 0.435 3.565 19 O -0.627 6.627 20 N -0.571 5.571 21 C -0.334 4.334 22 H 0.076 0.924 23 C -0.010 4.010 24 N -0.918 5.918 25 Si 0.989 3.011 26 H -0.275 1.275 27 H -0.270 1.270 28 H -0.272 1.272 29 C 0.117 3.883 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.047 0.953 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.075 0.925 43 H 0.112 0.888 44 H 0.347 0.653 45 H 0.079 0.921 46 H 0.107 0.893 47 H 0.398 0.602 48 H 0.278 0.722 49 H 0.061 0.939 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.408 -21.640 -4.216 32.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.178 4.178 3 C -0.132 4.132 4 C -0.015 4.015 5 O -0.312 6.312 6 C 0.021 3.979 7 H 0.136 0.864 8 C -0.224 4.224 9 C 0.308 3.692 10 O -0.458 6.458 11 N -0.349 5.349 12 C -0.027 4.027 13 C -0.199 4.199 14 C -0.025 4.025 15 H 0.130 0.870 16 N -0.310 5.310 17 C -0.062 4.062 18 C 0.223 3.777 19 O -0.514 6.514 20 N -0.209 5.209 21 C -0.464 4.464 22 H 0.094 0.906 23 C -0.209 4.209 24 N -0.559 5.559 25 Si 0.813 3.187 26 H -0.200 1.200 27 H -0.195 1.195 28 H -0.197 1.197 29 C -0.007 4.007 30 H 0.114 0.886 31 H 0.131 0.869 32 H 0.141 0.859 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.066 0.934 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.117 0.883 42 H 0.093 0.907 43 H 0.130 0.870 44 H 0.167 0.833 45 H 0.097 0.903 46 H 0.125 0.875 47 H 0.232 0.768 48 H 0.087 0.913 49 H 0.080 0.920 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.451 -20.377 -5.613 31.570 hybrid contribution 0.597 0.399 0.991 1.224 sum -22.854 -19.978 -4.622 30.705 Atomic orbital electron populations 1.24082 0.95882 1.02749 0.99651 1.22809 0.96161 0.97624 1.01176 1.20635 0.97789 0.96593 0.98135 1.22734 0.94344 0.85078 0.99325 1.88015 1.54350 1.39211 1.49602 1.21919 0.87882 0.99686 0.88434 0.86442 1.22262 1.02571 1.01585 0.95965 1.20836 0.82928 0.82742 0.82652 1.90708 1.81668 1.47123 1.26311 1.48481 1.16095 1.40856 1.29428 1.22742 1.00613 0.94841 0.84542 1.23566 0.97797 1.00857 0.97697 1.22593 0.95277 0.90513 0.94100 0.86950 1.59857 1.05499 1.18924 1.46755 1.21525 0.92372 0.93150 0.99106 1.20990 0.82645 0.92021 0.82085 1.90512 1.63840 1.36203 1.60810 1.41907 1.19181 1.09055 1.50747 1.19680 1.04174 0.87210 1.35316 0.90575 1.25963 0.96382 1.01919 0.96685 1.69662 1.17498 1.27209 1.41559 0.84922 0.77962 0.77546 0.78223 1.20015 1.19487 1.19708 1.21770 0.86147 0.93958 0.98816 0.88560 0.86886 0.85878 0.91379 0.91242 0.91612 0.91150 0.88798 0.93387 0.88867 0.87694 0.88305 0.90654 0.86998 0.83310 0.90341 0.87527 0.76819 0.91301 0.92013 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.63 14.32 67.78 0.97 -0.66 16 2 C -0.16 -1.55 9.52 25.65 0.24 -1.30 16 3 C -0.09 -1.26 6.03 29.85 0.18 -1.08 16 4 C 0.06 0.78 5.73 71.98 0.41 1.19 16 5 O -0.39 -8.31 9.55 -130.23 -1.24 -9.56 16 6 C 0.08 1.35 2.42 29.85 0.07 1.42 16 7 H 0.12 1.07 7.52 -2.39 -0.02 1.05 16 8 C -0.17 -2.04 9.37 71.98 0.67 -1.36 16 9 C 0.52 13.08 7.15 87.66 0.63 13.70 16 10 O -0.58 -21.28 16.88 15.70 0.27 -21.01 16 11 N -0.61 -12.38 3.33 -811.78 -2.70 -15.08 16 12 C 0.09 0.98 6.50 86.85 0.56 1.55 16 13 C -0.16 -2.08 6.63 31.99 0.21 -1.86 16 14 C 0.09 1.72 3.22 46.11 0.15 1.87 16 15 H 0.11 1.91 7.89 -2.39 -0.02 1.89 16 16 N -0.68 -19.74 5.92 -489.43 -2.90 -22.64 16 17 C 0.07 2.17 6.02 85.56 0.52 2.68 16 18 C 0.43 19.99 7.82 87.66 0.69 20.68 16 19 O -0.63 -34.50 15.78 -3.09 -0.05 -34.55 16 20 N -0.57 -28.46 5.29 -306.98 -1.62 -30.08 16 21 C -0.33 -18.78 9.68 84.04 0.81 -17.96 16 22 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 23 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 24 N -0.92 -48.50 13.05 21.66 0.28 -48.22 16 25 Si 0.99 42.57 29.55 68.60 2.03 44.60 16 26 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 29 C 0.12 2.85 6.64 86.73 0.58 3.43 16 30 H 0.10 0.85 7.84 -2.91 -0.02 0.83 16 31 H 0.11 0.67 8.06 -2.91 -0.02 0.64 16 32 H 0.12 0.86 8.06 -2.91 -0.02 0.84 16 33 H 0.07 1.00 7.79 -2.39 -0.02 0.98 16 34 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.07 0.64 8.08 -2.39 -0.02 0.62 16 36 H 0.07 0.63 7.79 -2.39 -0.02 0.61 16 37 H 0.09 0.76 5.98 -2.39 -0.01 0.75 16 38 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 0.75 7.79 -2.38 -0.02 0.73 16 40 H 0.11 0.59 5.49 -2.38 -0.01 0.58 16 41 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.07 1.12 7.82 -2.39 -0.02 1.10 16 43 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.35 10.81 8.01 -89.69 -0.72 10.10 16 45 H 0.08 1.94 8.13 -2.39 -0.02 1.92 16 46 H 0.11 2.92 8.09 -2.38 -0.02 2.90 16 47 H 0.40 18.54 7.90 -92.70 -0.73 17.81 16 48 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 49 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.05 1.53 8.03 -2.39 -0.02 1.51 16 Total: -1.00 -79.78 413.63 0.72 -79.06 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: -0.50 Total: 35.24 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: 7.16 Total: 22.24 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -6.94 Total: -116.02 kcal Atomic # 8 Polarization: -64.10 SS G_CDS: -1.03 Total: -65.12 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -79.78 0.72 -79.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317056165.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.773 kcal (2) G-P(sol) polarization free energy of solvation -79.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds