Wall clock time and date at job start Wed Apr 1 2020 00:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47271 * 2 1 4 4 C 1.34772 * 119.99949 * 84.76506 * 3 2 1 5 5 O 1.21281 * 119.99820 * 185.31782 * 4 3 2 6 6 C 1.50701 * 120.00498 * 5.03846 * 4 3 2 7 7 H 1.09004 * 110.27155 * 312.42034 * 6 4 3 8 8 C 1.54942 * 110.30757 * 74.61393 * 6 4 3 9 9 C 1.55308 * 100.94126 * 155.36414 * 8 6 4 10 10 C 1.54374 * 102.25301 * 325.86680 * 9 8 6 11 11 O 1.43242 * 107.59072 * 21.35879 * 10 9 8 12 12 C 1.46497 * 119.99863 * 264.76295 * 3 2 1 13 13 H 1.08997 * 110.27344 * 187.74271 * 12 3 2 14 14 C 1.54595 * 110.30923 * 309.93395 * 12 3 2 15 15 C 1.54941 * 102.92362 * 96.95734 * 14 12 3 16 16 N 1.48533 * 103.22369 * 37.41664 * 15 14 12 17 17 C 1.46901 * 111.00200 * 200.28152 * 16 15 14 18 18 C 1.50700 * 109.46743 * 307.39369 * 17 16 15 19 19 O 1.21298 * 120.00165 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00252 * 179.97438 * 18 17 16 21 21 C 1.37091 * 120.00352 * 180.02562 * 20 18 17 22 22 H 1.07995 * 119.99821 * 0.02562 * 21 20 18 23 23 C 1.38953 * 120.00293 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99539 * 359.97438 * 23 21 20 25 25 Si 1.86791 * 120.00273 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47123 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47295 * 119.99781 * 25 23 21 28 28 H 1.48505 * 109.47262 * 239.99819 * 25 23 21 29 29 C 1.47907 * 105.82205 * 320.79150 * 16 15 14 30 30 H 1.08998 * 109.46704 * 306.92093 * 1 2 3 31 31 H 1.08996 * 109.46758 * 66.91846 * 1 2 3 32 32 H 1.09003 * 109.47145 * 186.92184 * 1 2 3 33 33 H 1.09002 * 109.47234 * 239.99715 * 2 1 3 34 34 H 1.09007 * 109.46859 * 119.99905 * 2 1 3 35 35 H 1.09003 * 111.13090 * 273.28092 * 8 6 4 36 36 H 1.09004 * 111.12466 * 37.44835 * 8 6 4 37 37 H 1.09006 * 110.84502 * 207.67748 * 9 8 6 38 38 H 1.08997 * 111.02219 * 84.13838 * 9 8 6 39 39 H 1.09003 * 109.83757 * 261.84558 * 10 9 8 40 40 H 1.08993 * 109.83328 * 140.86854 * 10 9 8 41 41 H 1.09002 * 110.72764 * 215.31796 * 14 12 3 42 42 H 1.09004 * 110.72672 * 338.60245 * 14 12 3 43 43 H 1.08992 * 110.66670 * 278.98351 * 15 14 12 44 44 H 1.09001 * 110.81067 * 155.91477 * 15 14 12 45 45 H 1.09000 * 109.47072 * 67.39239 * 17 16 15 46 46 H 1.08997 * 109.47501 * 187.39524 * 17 16 15 47 47 H 0.97006 * 119.99401 * 0.02562 * 20 18 17 48 48 H 0.96999 * 119.99633 * 180.02562 * 24 23 21 49 49 H 1.08996 * 109.91711 * 265.98176 * 29 16 15 50 50 H 1.08995 * 109.91715 * 144.68214 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1426 2.0520 1.1623 5 8 2.4541 3.2242 1.1556 6 6 1.8885 1.3474 2.4700 7 1 0.9563 0.7847 2.4208 8 6 3.0703 0.4056 2.8119 9 6 2.9423 0.3210 4.3574 10 6 2.4364 1.7332 4.7220 11 8 1.8415 2.2967 3.5470 12 6 2.3718 2.0332 -1.2634 13 1 2.8411 2.9982 -1.0721 14 6 3.3163 1.1289 -2.0881 15 6 2.3479 0.4160 -3.0652 16 7 1.3622 1.4755 -3.4000 17 6 0.1172 0.8919 -3.9171 18 6 0.4360 -0.0471 -5.0518 19 8 1.5872 -0.2141 -5.3957 20 7 -0.5578 -0.7022 -5.6840 21 6 -0.2677 -1.5568 -6.7160 22 1 0.7572 -1.7055 -7.0221 23 6 -1.2924 -2.2317 -7.3681 24 7 -2.5396 -2.0511 -6.9952 25 14 -0.8973 -3.3956 -8.7746 26 1 0.5707 -3.4220 -8.9978 27 1 -1.3715 -4.7613 -8.4352 28 1 -1.5769 -2.9284 -10.0096 29 6 1.1191 2.2126 -2.1410 30 1 -0.3633 0.6173 0.8216 31 1 -0.3633 0.4029 -0.9454 32 1 -0.3633 -1.0202 0.1239 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8901 35 1 2.9378 -0.5740 2.3525 36 1 4.0227 0.8485 2.5203 37 1 3.9113 0.1254 4.8168 38 1 2.2165 -0.4383 4.6486 39 1 3.2721 2.3530 5.0469 40 1 1.6934 1.6661 5.5166 41 1 4.0441 1.7283 -2.6351 42 1 3.8167 0.4052 -1.4446 43 1 1.8572 -0.4249 -2.5753 44 1 2.8750 0.0844 -3.9597 45 1 -0.3846 0.3423 -3.1207 46 1 -0.5353 1.6876 -4.2764 47 1 -1.4784 -0.5689 -5.4088 48 1 -3.2549 -2.5226 -7.4502 49 1 0.2473 1.8011 -1.6322 50 1 0.9633 3.2701 -2.3540 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318459629.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:07 Heat of formation + Delta-G solvation = -90.062445 kcal Electronic energy + Delta-G solvation = -30977.893288 eV Core-core repulsion = 26812.911196 eV Total energy + Delta-G solvation = -4164.982092 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.01818 -39.62559 -38.50053 -37.44659 -35.56691 -33.95872 -32.63459 -32.07350 -31.26800 -30.42827 -29.92736 -28.35330 -26.54084 -24.51310 -24.14478 -23.18913 -22.15449 -21.22089 -20.91170 -19.44889 -19.05113 -18.20298 -17.86468 -17.00817 -16.62797 -15.89968 -15.84498 -15.51906 -15.10619 -15.06051 -14.68311 -14.45885 -14.14906 -14.01637 -13.81880 -13.61678 -13.52804 -13.42253 -13.08129 -12.55621 -12.43041 -12.24538 -12.16210 -12.12085 -11.86964 -11.77455 -11.63616 -11.57401 -11.50209 -11.29681 -11.19961 -11.04588 -10.75554 -10.63237 -10.36188 -10.26652 -10.22042 -9.57923 -9.53950 -8.92363 -8.40259 -8.03866 -7.88283 -6.46242 -3.87101 2.31063 2.55186 3.12833 3.24048 3.30819 3.51271 3.84427 3.90228 4.06225 4.13516 4.30203 4.33737 4.57810 4.61671 4.64460 4.65432 4.73692 4.81668 4.96368 5.02096 5.05704 5.18115 5.21329 5.23181 5.23649 5.32841 5.33987 5.36513 5.49187 5.53285 5.58014 5.60049 5.68678 5.76747 5.85731 5.94721 6.04870 6.09072 6.19800 6.24721 6.35000 6.54632 6.64588 7.17007 7.20053 7.26579 7.51346 7.98113 8.01666 8.56699 9.13520 9.49038 10.00435 10.71426 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.002318 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.635364 B =12074.557851 C =12454.663917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.087 3.913 3 N -0.600 5.600 4 C 0.516 3.484 5 O -0.521 6.521 6 C 0.064 3.936 7 H 0.096 0.904 8 C -0.146 4.146 9 C -0.154 4.154 10 C 0.048 3.952 11 O -0.356 6.356 12 C 0.131 3.869 13 H 0.107 0.893 14 C -0.135 4.135 15 C 0.035 3.965 16 N -0.491 5.491 17 C 0.037 3.963 18 C 0.442 3.558 19 O -0.580 6.580 20 N -0.561 5.561 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.017 3.983 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.120 0.880 45 H 0.047 0.953 46 H 0.090 0.910 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.057 0.943 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.854 2.169 22.084 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.036 4.036 3 N -0.335 5.335 4 C 0.303 3.697 5 O -0.395 6.395 6 C 0.003 3.997 7 H 0.114 0.886 8 C -0.183 4.183 9 C -0.191 4.191 10 C -0.028 4.028 11 O -0.274 6.274 12 C 0.028 3.972 13 H 0.125 0.875 14 C -0.174 4.174 15 C -0.092 4.092 16 N -0.216 5.216 17 C -0.095 4.095 18 C 0.228 3.772 19 O -0.465 6.465 20 N -0.198 5.198 21 C -0.428 4.428 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.112 4.112 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.056 0.944 44 H 0.138 0.862 45 H 0.065 0.935 46 H 0.108 0.892 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.075 0.925 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.720 3.169 21.353 22.926 hybrid contribution -1.051 -1.344 0.113 1.710 sum 6.669 1.825 21.466 22.552 Atomic orbital electron populations 1.22427 0.95506 1.02786 1.03034 1.21910 0.94939 0.82568 1.04173 1.48026 1.65360 1.14197 1.05910 1.20420 0.77319 0.87059 0.84897 1.90710 1.46314 1.15559 1.86965 1.22907 0.99839 0.89893 0.87063 0.88630 1.23280 0.98604 1.00169 0.96278 1.23131 1.03017 0.97726 0.95263 1.23211 0.97864 0.93529 0.88235 1.88532 1.80816 1.38940 1.19091 1.21973 0.95390 0.97736 0.82098 0.87460 1.22957 0.98036 0.98901 0.97497 1.23623 0.93567 0.92132 0.99847 1.64648 1.09230 1.23148 1.24577 1.22110 0.92325 0.97938 0.97136 1.19693 0.86290 0.84851 0.86396 1.90437 1.19996 1.67953 1.68134 1.41864 1.08200 1.38914 1.30782 1.19742 0.95295 1.18812 1.08935 0.87819 1.25276 0.94711 0.98707 0.99272 1.69622 0.99046 1.43298 1.42223 0.85802 0.78851 0.79393 0.80316 1.19201 1.20771 1.20718 1.23487 0.97003 1.00577 0.90098 0.92336 0.91459 0.90993 0.88692 0.90412 0.88773 0.89600 0.89471 0.89999 0.90964 0.90918 0.89563 0.90872 0.94434 0.86181 0.93510 0.89228 0.77469 0.91884 0.92510 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 9.51 37.16 0.35 -1.26 16 2 C 0.09 0.77 5.18 -4.04 -0.02 0.75 16 3 N -0.60 -6.67 2.37 -164.56 -0.39 -7.06 16 4 C 0.52 6.55 6.96 -10.99 -0.08 6.47 16 5 O -0.52 -8.78 15.98 -13.57 -0.22 -9.00 16 6 C 0.06 0.62 2.91 -26.86 -0.08 0.55 16 7 H 0.10 0.78 6.35 -51.93 -0.33 0.45 16 8 C -0.15 -0.99 6.08 -24.48 -0.15 -1.14 16 9 C -0.15 -0.82 7.02 -24.79 -0.17 -0.99 16 10 C 0.05 0.36 7.79 37.88 0.30 0.66 16 11 O -0.36 -4.20 10.63 -54.36 -0.58 -4.78 16 12 C 0.13 1.66 3.40 -66.57 -0.23 1.43 16 13 H 0.11 1.48 7.04 -51.93 -0.37 1.11 16 14 C -0.14 -1.68 6.10 -24.87 -0.15 -1.83 16 15 C 0.04 0.55 4.93 -1.90 -0.01 0.54 16 16 N -0.49 -8.03 5.26 -231.89 -1.22 -9.25 16 17 C 0.04 0.64 5.52 -4.97 -0.03 0.61 16 18 C 0.44 10.04 7.49 -10.99 -0.08 9.95 16 19 O -0.58 -14.81 13.09 5.54 0.07 -14.74 16 20 N -0.56 -13.82 5.29 -10.96 -0.06 -13.87 16 21 C -0.30 -8.09 9.68 -14.93 -0.14 -8.23 16 22 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 23 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 24 N -0.90 -24.06 13.05 55.50 0.72 -23.33 16 25 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 29 C 0.02 0.23 6.27 -2.75 -0.02 0.22 16 30 H 0.06 0.51 7.10 -51.93 -0.37 0.14 16 31 H 0.07 0.72 5.02 -51.93 -0.26 0.46 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.94 4.46 -51.93 -0.23 0.70 16 34 H 0.08 0.51 4.88 -51.93 -0.25 0.25 16 35 H 0.09 0.46 6.47 -51.93 -0.34 0.13 16 36 H 0.09 0.66 8.05 -51.93 -0.42 0.25 16 37 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.07 0.79 7.62 -51.93 -0.40 0.40 16 43 H 0.04 0.57 5.90 -51.93 -0.31 0.26 16 44 H 0.12 2.29 5.96 -51.93 -0.31 1.99 16 45 H 0.05 0.74 7.00 -51.93 -0.36 0.37 16 46 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 47 H 0.39 9.29 7.90 -40.82 -0.32 8.96 16 48 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 49 H 0.06 0.74 4.33 -51.93 -0.22 0.51 16 50 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -33.04 379.57 -8.95 -41.99 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -7.38 Total: 10.51 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -0.61 Total: 8.21 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.94 Total: -53.52 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.72 Total: -28.52 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.04 -8.95 -41.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318459629.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.069 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds