Wall clock time and date at job start Wed Apr 1 2020 00:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47271 * 2 1 4 4 C 1.34772 * 119.99949 * 84.76506 * 3 2 1 5 5 O 1.21281 * 119.99820 * 185.31782 * 4 3 2 6 6 C 1.50701 * 120.00498 * 5.03846 * 4 3 2 7 7 H 1.09004 * 110.27155 * 312.42034 * 6 4 3 8 8 C 1.54942 * 110.30757 * 74.61393 * 6 4 3 9 9 C 1.55308 * 100.94126 * 155.36414 * 8 6 4 10 10 C 1.54374 * 102.25301 * 325.86680 * 9 8 6 11 11 O 1.43242 * 107.59072 * 21.35879 * 10 9 8 12 12 C 1.46497 * 119.99863 * 264.76295 * 3 2 1 13 13 H 1.08997 * 110.27344 * 187.74271 * 12 3 2 14 14 C 1.54595 * 110.30923 * 309.93395 * 12 3 2 15 15 C 1.54941 * 102.92362 * 96.95734 * 14 12 3 16 16 N 1.48533 * 103.22369 * 37.41664 * 15 14 12 17 17 C 1.46901 * 111.00200 * 200.28152 * 16 15 14 18 18 C 1.50700 * 109.46743 * 307.39369 * 17 16 15 19 19 O 1.21298 * 120.00165 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00252 * 179.97438 * 18 17 16 21 21 C 1.37091 * 120.00352 * 180.02562 * 20 18 17 22 22 H 1.07995 * 119.99821 * 0.02562 * 21 20 18 23 23 C 1.38953 * 120.00293 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99539 * 359.97438 * 23 21 20 25 25 Si 1.86791 * 120.00273 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47123 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47295 * 119.99781 * 25 23 21 28 28 H 1.48505 * 109.47262 * 239.99819 * 25 23 21 29 29 C 1.47907 * 105.82205 * 320.79150 * 16 15 14 30 30 H 1.08998 * 109.46704 * 306.92093 * 1 2 3 31 31 H 1.08996 * 109.46758 * 66.91846 * 1 2 3 32 32 H 1.09003 * 109.47145 * 186.92184 * 1 2 3 33 33 H 1.09002 * 109.47234 * 239.99715 * 2 1 3 34 34 H 1.09007 * 109.46859 * 119.99905 * 2 1 3 35 35 H 1.09003 * 111.13090 * 273.28092 * 8 6 4 36 36 H 1.09004 * 111.12466 * 37.44835 * 8 6 4 37 37 H 1.09006 * 110.84502 * 207.67748 * 9 8 6 38 38 H 1.08997 * 111.02219 * 84.13838 * 9 8 6 39 39 H 1.09003 * 109.83757 * 261.84558 * 10 9 8 40 40 H 1.08993 * 109.83328 * 140.86854 * 10 9 8 41 41 H 1.09002 * 110.72764 * 215.31796 * 14 12 3 42 42 H 1.09004 * 110.72672 * 338.60245 * 14 12 3 43 43 H 1.08992 * 110.66670 * 278.98351 * 15 14 12 44 44 H 1.09001 * 110.81067 * 155.91477 * 15 14 12 45 45 H 1.09000 * 109.47072 * 67.39239 * 17 16 15 46 46 H 1.08997 * 109.47501 * 187.39524 * 17 16 15 47 47 H 0.97006 * 119.99401 * 0.02562 * 20 18 17 48 48 H 0.96999 * 119.99633 * 180.02562 * 24 23 21 49 49 H 1.08996 * 109.91711 * 265.98176 * 29 16 15 50 50 H 1.08995 * 109.91715 * 144.68214 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1426 2.0520 1.1623 5 8 2.4541 3.2242 1.1556 6 6 1.8885 1.3474 2.4700 7 1 0.9563 0.7847 2.4208 8 6 3.0703 0.4056 2.8119 9 6 2.9423 0.3210 4.3574 10 6 2.4364 1.7332 4.7220 11 8 1.8415 2.2967 3.5470 12 6 2.3718 2.0332 -1.2634 13 1 2.8411 2.9982 -1.0721 14 6 3.3163 1.1289 -2.0881 15 6 2.3479 0.4160 -3.0652 16 7 1.3622 1.4755 -3.4000 17 6 0.1172 0.8919 -3.9171 18 6 0.4360 -0.0471 -5.0518 19 8 1.5872 -0.2141 -5.3957 20 7 -0.5578 -0.7022 -5.6840 21 6 -0.2677 -1.5568 -6.7160 22 1 0.7572 -1.7055 -7.0221 23 6 -1.2924 -2.2317 -7.3681 24 7 -2.5396 -2.0511 -6.9952 25 14 -0.8973 -3.3956 -8.7746 26 1 0.5707 -3.4220 -8.9978 27 1 -1.3715 -4.7613 -8.4352 28 1 -1.5769 -2.9284 -10.0096 29 6 1.1191 2.2126 -2.1410 30 1 -0.3633 0.6173 0.8216 31 1 -0.3633 0.4029 -0.9454 32 1 -0.3633 -1.0202 0.1239 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8901 35 1 2.9378 -0.5740 2.3525 36 1 4.0227 0.8485 2.5203 37 1 3.9113 0.1254 4.8168 38 1 2.2165 -0.4383 4.6486 39 1 3.2721 2.3530 5.0469 40 1 1.6934 1.6661 5.5166 41 1 4.0441 1.7283 -2.6351 42 1 3.8167 0.4052 -1.4446 43 1 1.8572 -0.4249 -2.5753 44 1 2.8750 0.0844 -3.9597 45 1 -0.3846 0.3423 -3.1207 46 1 -0.5353 1.6876 -4.2764 47 1 -1.4784 -0.5689 -5.4088 48 1 -3.2549 -2.5226 -7.4502 49 1 0.2473 1.8011 -1.6322 50 1 0.9633 3.2701 -2.3540 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318459629.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:06 Heat of formation + Delta-G solvation = -113.998042 kcal Electronic energy + Delta-G solvation = -30978.931213 eV Core-core repulsion = 26812.911196 eV Total energy + Delta-G solvation = -4166.020017 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.94559 -40.74316 -39.80053 -38.74766 -36.66960 -35.86184 -33.53031 -33.22861 -32.88862 -31.29575 -30.78138 -29.48459 -28.05073 -26.05420 -25.09963 -23.97361 -22.67293 -22.46787 -21.89762 -21.09036 -20.12073 -19.83141 -18.97833 -18.01292 -17.60137 -17.30064 -16.74408 -16.63810 -16.35895 -16.20669 -16.15287 -15.76246 -15.59297 -15.07063 -14.89704 -14.68493 -14.39942 -14.32850 -14.15146 -13.88675 -13.59425 -13.41128 -13.27224 -13.11213 -12.96085 -12.88157 -12.77140 -12.62751 -12.41377 -12.39989 -12.30461 -12.25027 -12.12448 -11.98119 -11.83899 -11.57116 -11.44967 -11.00784 -10.43446 -10.18709 -9.99742 -9.89027 -9.23734 -8.46109 -5.94273 1.36837 1.39449 1.42938 1.56517 1.66858 2.03939 2.28906 2.80166 2.91697 3.21027 3.26635 3.33403 3.48239 3.62405 3.72790 3.82163 3.93114 4.03344 4.07166 4.09047 4.18239 4.24363 4.26905 4.32861 4.34189 4.43721 4.48254 4.55202 4.65076 4.71009 4.74667 4.78487 4.82960 4.83985 4.92812 4.96488 4.99345 5.15954 5.17143 5.28027 5.30637 5.41435 5.44227 5.85903 5.87882 5.96430 6.09736 6.28904 6.60960 7.04204 7.13802 7.56025 8.11485 8.71501 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.002318 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.635364 B =12074.557851 C =12454.663917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.083 3.917 3 N -0.593 5.593 4 C 0.512 3.488 5 O -0.573 6.573 6 C 0.063 3.937 7 H 0.117 0.883 8 C -0.143 4.143 9 C -0.143 4.143 10 C 0.037 3.963 11 O -0.394 6.394 12 C 0.137 3.863 13 H 0.094 0.906 14 C -0.121 4.121 15 C 0.040 3.960 16 N -0.509 5.509 17 C 0.049 3.951 18 C 0.442 3.558 19 O -0.611 6.611 20 N -0.572 5.572 21 C -0.328 4.328 22 H 0.081 0.919 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.274 1.274 29 C 0.023 3.977 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.043 0.957 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.103 0.897 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.067 0.933 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.558 0.528 23.779 24.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.038 4.038 3 N -0.326 5.326 4 C 0.301 3.699 5 O -0.451 6.451 6 C 0.002 3.998 7 H 0.134 0.866 8 C -0.180 4.180 9 C -0.180 4.180 10 C -0.039 4.039 11 O -0.313 6.313 12 C 0.032 3.968 13 H 0.112 0.888 14 C -0.159 4.159 15 C -0.087 4.087 16 N -0.234 5.234 17 C -0.083 4.083 18 C 0.230 3.770 19 O -0.497 6.497 20 N -0.209 5.209 21 C -0.457 4.457 22 H 0.099 0.901 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.199 1.199 29 C -0.106 4.106 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.128 0.872 35 H 0.138 0.862 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.062 0.938 44 H 0.100 0.900 45 H 0.088 0.912 46 H 0.121 0.879 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.407 1.508 23.065 24.272 hybrid contribution -0.935 -0.777 -0.374 1.272 sum 6.472 0.731 22.691 23.607 Atomic orbital electron populations 1.22412 0.95273 1.03827 1.02093 1.22114 0.95093 0.81181 1.05404 1.48044 1.64658 1.14927 1.04990 1.21084 0.76132 0.86572 0.86119 1.90683 1.48827 1.17885 1.87712 1.23065 1.01955 0.89731 0.85018 0.86595 1.23327 0.96671 1.00389 0.97629 1.23140 1.04360 0.96588 0.93954 1.23446 0.98203 0.94892 0.87330 1.88495 1.81382 1.40807 1.20605 1.21770 0.94828 0.97432 0.82733 0.88763 1.22846 0.97293 0.98894 0.96899 1.23429 0.93820 0.92547 0.98931 1.64607 1.08861 1.23528 1.26382 1.21982 0.93253 0.97295 0.95751 1.20592 0.85427 0.84345 0.86686 1.90443 1.21291 1.68779 1.69188 1.41921 1.08716 1.39367 1.30909 1.19677 0.94641 1.20701 1.10718 0.90146 1.26025 0.94444 0.99699 1.01159 1.69682 0.99587 1.43856 1.43059 0.84887 0.78274 0.77785 0.77508 1.19711 1.19552 1.19929 1.23455 0.97900 1.00109 0.89093 0.91920 0.93400 0.89266 0.89349 0.87229 0.86181 0.90853 0.87908 0.87991 0.91340 0.89548 0.89793 0.88764 0.93846 0.89958 0.91168 0.87931 0.77097 0.91360 0.91491 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.71 9.51 71.98 0.68 -2.03 16 2 C 0.08 1.26 5.18 86.38 0.45 1.71 16 3 N -0.59 -12.27 2.37 -792.94 -1.88 -14.15 16 4 C 0.51 12.52 6.96 87.66 0.61 13.13 16 5 O -0.57 -19.61 15.98 15.26 0.24 -19.37 16 6 C 0.06 1.10 2.91 30.51 0.09 1.19 16 7 H 0.12 1.52 6.35 -2.39 -0.02 1.51 16 8 C -0.14 -1.52 6.08 32.05 0.19 -1.32 16 9 C -0.14 -1.05 7.02 31.85 0.22 -0.83 16 10 C 0.04 0.50 7.79 72.45 0.56 1.06 16 11 O -0.39 -8.95 10.63 -130.69 -1.39 -10.33 16 12 C 0.14 3.35 3.40 45.87 0.16 3.51 16 13 H 0.09 2.62 7.04 -2.39 -0.02 2.61 16 14 C -0.12 -2.90 6.10 31.80 0.19 -2.71 16 15 C 0.04 1.23 4.93 86.65 0.43 1.66 16 16 N -0.51 -16.44 5.26 -887.56 -4.67 -21.11 16 17 C 0.05 1.67 5.52 85.56 0.47 2.14 16 18 C 0.44 20.32 7.49 87.66 0.66 20.98 16 19 O -0.61 -32.05 13.09 -3.09 -0.04 -32.09 16 20 N -0.57 -28.56 5.29 -306.98 -1.62 -30.18 16 21 C -0.33 -18.12 9.68 84.04 0.81 -17.31 16 22 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 24 N -0.92 -48.84 13.05 21.67 0.28 -48.56 16 25 Si 0.99 42.12 29.55 68.60 2.03 44.15 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 29 C 0.02 0.60 6.27 86.45 0.54 1.15 16 30 H 0.06 0.91 7.10 -2.39 -0.02 0.89 16 31 H 0.05 0.92 5.02 -2.39 -0.01 0.91 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.51 4.46 -2.39 -0.01 1.50 16 34 H 0.11 0.97 4.88 -2.38 -0.01 0.96 16 35 H 0.12 0.63 6.47 -2.39 -0.02 0.61 16 36 H 0.07 0.99 8.05 -2.39 -0.02 0.97 16 37 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 38 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.09 1.87 7.62 -2.38 -0.02 1.85 16 43 H 0.04 1.28 5.90 -2.39 -0.01 1.27 16 44 H 0.08 3.24 5.96 -2.39 -0.01 3.23 16 45 H 0.07 2.10 7.00 -2.39 -0.02 2.08 16 46 H 0.10 3.27 8.14 -2.39 -0.02 3.26 16 47 H 0.40 18.87 7.90 -92.70 -0.73 18.14 16 48 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 49 H 0.07 1.65 4.33 -2.39 -0.01 1.64 16 50 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -74.09 379.57 -0.25 -74.34 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: 0.25 Total: 35.22 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 6.54 Total: 22.08 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -7.88 Total: -113.99 kcal Atomic # 8 Polarization: -60.61 SS G_CDS: -1.19 Total: -61.79 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -74.09 -0.25 -74.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318459629.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.656 kcal (2) G-P(sol) polarization free energy of solvation -74.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds