Wall clock time and date at job start Wed Apr 1 2020 00:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46964 * 2 1 4 4 C 1.34775 * 119.99658 * 274.07132 * 3 2 1 5 5 O 1.21348 * 120.00048 * 185.13449 * 4 3 2 6 6 C 1.49453 * 120.00282 * 5.13658 * 4 3 2 7 7 O 1.21354 * 119.99492 * 5.58357 * 6 4 3 8 8 N 1.34777 * 120.00242 * 185.58879 * 6 4 3 9 9 C 1.47020 * 125.64747 * 0.02562 * 8 6 4 10 10 C 1.54324 * 107.26901 * 181.02184 * 9 8 6 11 11 C 1.55158 * 102.94162 * 22.19206 * 10 9 8 12 12 O 1.42902 * 111.00528 * 82.60919 * 11 10 9 13 13 C 1.50700 * 111.00249 * 206.41849 * 11 10 9 14 14 H 1.07998 * 119.99854 * 354.76620 * 13 11 10 15 15 C 1.37877 * 119.99953 * 174.75988 * 13 11 10 16 16 N 1.31515 * 120.00196 * 4.74203 * 15 13 11 17 17 Si 1.86801 * 119.99994 * 184.75002 * 15 13 11 18 18 H 1.48497 * 109.47346 * 94.99241 * 17 15 13 19 19 H 1.48501 * 109.47287 * 214.99642 * 17 15 13 20 20 H 1.48503 * 109.46915 * 334.99442 * 17 15 13 21 21 C 1.47427 * 125.64516 * 179.71407 * 8 6 4 22 22 C 1.46499 * 120.00279 * 94.07588 * 3 2 1 23 23 H 1.09000 * 110.28846 * 2.12028 * 22 3 2 24 24 C 1.54264 * 110.31970 * 239.99762 * 22 3 2 25 25 C 1.54379 * 105.05919 * 241.09912 * 24 22 3 26 26 N 1.48566 * 104.59380 * 23.85552 * 25 24 22 27 27 C 1.46895 * 110.99992 * 200.95531 * 26 25 24 28 28 C 1.48561 * 104.22140 * 320.51923 * 26 25 24 29 29 H 1.09000 * 109.46593 * 60.00793 * 1 2 3 30 30 H 1.09007 * 109.47171 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47606 * 300.00833 * 1 2 3 32 32 H 1.09000 * 109.46593 * 119.99207 * 2 1 3 33 33 H 1.08993 * 109.47136 * 239.99131 * 2 1 3 34 34 H 1.09002 * 109.87708 * 300.43915 * 9 8 6 35 35 H 1.08999 * 109.88443 * 61.45246 * 9 8 6 36 36 H 1.09005 * 110.71699 * 140.55291 * 10 9 8 37 37 H 1.08997 * 110.72097 * 263.82344 * 10 9 8 38 38 H 0.96697 * 114.00229 * 179.97438 * 12 11 10 39 39 H 0.96998 * 120.00178 * 179.97438 * 16 15 13 40 40 H 1.08998 * 110.36897 * 274.74196 * 21 8 6 41 41 H 1.08994 * 110.36806 * 37.07399 * 21 8 6 42 42 H 1.09002 * 110.32562 * 359.97438 * 24 22 3 43 43 H 1.09000 * 110.32168 * 122.20679 * 24 22 3 44 44 H 1.09000 * 110.40803 * 142.62898 * 25 24 22 45 45 H 1.08996 * 110.41554 * 264.95949 * 25 24 22 46 46 H 1.09000 * 109.47214 * 59.87865 * 27 26 25 47 47 H 1.09002 * 109.46670 * 179.87107 * 27 26 25 48 48 H 1.08997 * 109.47301 * 299.87475 * 27 26 25 49 49 H 1.09008 * 110.40365 * 280.69916 * 28 26 25 50 50 H 1.08996 * 110.41181 * 158.26545 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1648 2.0441 -1.1643 5 8 2.6563 3.1536 -1.1731 6 6 1.7218 1.4129 -2.4445 7 8 1.1388 0.3487 -2.4263 8 7 1.9698 2.0255 -3.6191 9 6 2.6638 3.3109 -3.7854 10 6 2.6919 3.6243 -5.2962 11 6 1.5158 2.7765 -5.8489 12 8 0.2701 3.4555 -5.6775 13 6 1.7394 2.4214 -7.2962 14 1 2.5885 2.8263 -7.8266 15 6 0.8600 1.5793 -7.9433 16 7 -0.2236 1.1606 -7.3268 17 14 1.2078 1.0331 -9.6954 18 1 1.8987 -0.2812 -9.6763 19 1 -0.0719 0.9089 -10.4385 20 1 2.0731 2.0375 -10.3645 21 6 1.5957 1.5144 -4.9504 22 6 2.3475 2.0419 1.2655 23 1 2.2073 1.3534 2.0989 24 6 1.4743 3.2991 1.4565 25 6 2.4730 4.4743 1.5266 26 7 3.6804 3.9825 0.8142 27 6 4.8707 4.7500 1.2039 28 6 3.8003 2.5631 1.2362 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.8933 -0.5139 -0.8898 34 1 2.1241 4.0949 -3.2540 35 1 3.6810 3.2354 -3.4011 36 1 2.5186 4.6858 -5.4731 37 1 3.6366 3.3078 -5.7382 38 1 -0.4943 2.9643 -6.0085 39 1 -0.8425 0.5685 -7.7821 40 1 2.3579 0.8294 -5.3217 41 1 0.6264 1.0179 -4.9075 42 1 0.8011 3.4249 0.6084 43 1 0.9069 3.2286 2.3845 44 1 2.0649 5.3505 1.0228 45 1 2.7110 4.7095 2.5639 46 1 5.0315 4.6509 2.2774 47 1 5.7404 4.3678 0.6695 48 1 4.7234 5.8007 0.9540 49 1 4.2476 2.4980 2.2281 50 1 4.3916 2.0004 0.5138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327399538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:45 Heat of formation + Delta-G solvation = -70.943048 kcal Electronic energy + Delta-G solvation = -32233.205198 eV Core-core repulsion = 28069.052185 eV Total energy + Delta-G solvation = -4164.153013 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.73066 -39.12487 -37.66260 -37.01728 -35.66198 -34.05770 -32.18469 -31.94834 -30.14797 -29.96082 -28.46927 -27.82406 -26.00654 -25.41194 -24.00192 -22.86322 -22.08879 -21.17804 -20.42094 -19.58321 -18.31857 -17.23382 -16.89586 -16.47062 -15.98620 -15.62172 -15.43994 -15.13284 -15.00983 -14.47325 -14.38501 -14.23747 -13.94567 -13.45511 -13.16220 -12.99089 -12.93931 -12.80860 -12.58608 -12.32288 -12.14203 -12.07640 -11.79781 -11.64738 -11.59728 -11.54205 -11.48816 -11.21408 -11.06374 -11.03602 -10.81271 -10.71257 -10.50625 -10.49158 -10.32762 -10.14823 -9.33227 -8.79760 -8.62298 -8.61426 -8.34719 -8.20496 -7.76294 -6.29027 -4.37894 2.05469 2.71873 3.20606 3.28756 3.31785 3.77503 3.85777 4.00127 4.26632 4.48401 4.57723 4.78158 4.93306 4.99561 5.08062 5.09705 5.19984 5.31103 5.40838 5.45145 5.50813 5.57241 5.58036 5.66049 5.67738 5.81468 5.87948 5.88949 5.92528 5.94006 6.07800 6.12994 6.16298 6.42893 6.46663 6.58347 6.66967 6.79125 6.87717 6.89429 6.95014 7.03711 7.23642 7.35728 7.39008 7.74285 7.98643 8.07282 8.26408 8.64579 8.67004 9.31102 9.45926 10.78193 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018012 B = 0.003346 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.108805 B = 8365.583412 C = 9287.086274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.107 3.893 3 N -0.593 5.593 4 C 0.495 3.505 5 O -0.460 6.460 6 C 0.503 3.497 7 O -0.534 6.534 8 N -0.575 5.575 9 C 0.115 3.885 10 C -0.122 4.122 11 C 0.249 3.751 12 O -0.582 6.582 13 C -0.538 4.538 14 H 0.068 0.932 15 C 0.071 3.929 16 N -0.894 5.894 17 Si 0.903 3.097 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.094 3.906 22 C 0.146 3.854 23 H 0.096 0.904 24 C -0.131 4.131 25 C 0.040 3.960 26 N -0.476 5.476 27 C 0.015 3.985 28 C 0.028 3.972 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.384 0.616 39 H 0.270 0.730 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.036 0.964 46 H 0.019 0.981 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.045 0.955 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.680 1.123 18.811 19.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.015 4.015 3 N -0.329 5.329 4 C 0.277 3.723 5 O -0.330 6.330 6 C 0.286 3.714 7 O -0.414 6.414 8 N -0.307 5.307 9 C -0.007 4.007 10 C -0.160 4.160 11 C 0.208 3.792 12 O -0.392 6.392 13 C -0.576 4.576 14 H 0.086 0.914 15 C -0.132 4.132 16 N -0.533 5.533 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.028 4.028 22 C 0.042 3.958 23 H 0.114 0.886 24 C -0.170 4.170 25 C -0.088 4.088 26 N -0.199 5.199 27 C -0.134 4.134 28 C -0.101 4.101 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.235 0.765 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.054 0.946 46 H 0.037 0.963 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.063 0.937 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.832 1.571 18.507 19.468 hybrid contribution -0.176 -0.989 -0.194 1.023 sum 5.656 0.582 18.313 19.176 Atomic orbital electron populations 1.22109 0.95645 1.02008 1.01948 1.21864 0.95208 0.81231 1.03228 1.47909 1.65735 1.14595 1.04700 1.20385 0.80518 0.86655 0.84784 1.90933 1.38504 1.17682 1.85869 1.19831 0.81802 0.85454 0.84311 1.90655 1.42425 1.21901 1.86440 1.48618 1.53786 1.22037 1.06241 1.22084 0.96164 0.84993 0.97488 1.22709 0.99366 1.01158 0.92765 1.19650 0.81889 0.85722 0.91941 1.86102 1.17982 1.49616 1.85463 1.21513 1.11443 1.29150 0.95491 0.91386 1.25085 0.94460 0.94931 0.98746 1.69638 1.11259 1.34314 1.38059 0.86391 0.77923 0.79035 0.83589 1.20451 1.21009 1.19632 1.23421 1.01070 0.99785 0.78481 1.21786 0.94049 0.94323 0.85632 0.88633 1.22693 0.98096 0.93911 1.02331 1.23010 0.91663 0.98280 0.95830 1.65589 1.01804 1.00769 1.51727 1.22520 0.94100 0.99295 0.97521 1.23425 0.96305 0.91556 0.98810 0.91120 0.92065 0.93870 0.91792 0.87988 0.91048 0.92031 0.90700 0.90588 0.76529 0.91947 0.91757 0.89572 0.90264 0.91079 0.90145 0.94591 0.96261 0.91528 0.91420 0.93704 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.67 37.16 0.36 -1.67 16 2 C 0.11 1.34 5.68 -4.04 -0.02 1.31 16 3 N -0.59 -8.04 2.41 -165.05 -0.40 -8.44 16 4 C 0.49 8.42 6.68 -11.58 -0.08 8.34 16 5 O -0.46 -8.19 10.24 5.50 0.06 -8.14 16 6 C 0.50 10.05 7.68 -11.58 -0.09 9.96 16 7 O -0.53 -11.16 11.67 5.49 0.06 -11.10 16 8 N -0.57 -12.23 3.32 -170.89 -0.57 -12.80 16 9 C 0.12 2.27 5.50 -3.06 -0.02 2.26 16 10 C -0.12 -2.54 6.12 -24.90 -0.15 -2.69 16 11 C 0.25 6.07 0.89 -89.50 -0.08 5.99 16 12 O -0.58 -15.09 13.20 -35.23 -0.47 -15.56 16 13 C -0.54 -13.95 8.26 -34.44 -0.28 -14.23 16 14 H 0.07 1.73 7.79 -52.49 -0.41 1.33 16 15 C 0.07 1.83 5.26 -17.82 -0.09 1.74 16 16 N -0.89 -23.57 10.70 55.43 0.59 -22.98 16 17 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 C 0.09 2.23 5.51 -2.41 -0.01 2.22 16 22 C 0.15 1.60 3.58 -66.55 -0.24 1.36 16 23 H 0.10 0.80 7.78 -51.93 -0.40 0.39 16 24 C -0.13 -1.44 6.09 -25.35 -0.15 -1.59 16 25 C 0.04 0.44 6.33 -2.18 -0.01 0.43 16 26 N -0.48 -5.95 3.28 -238.24 -0.78 -6.73 16 27 C 0.01 0.15 9.53 60.06 0.57 0.72 16 28 C 0.03 0.31 5.40 -2.19 -0.01 0.30 16 29 H 0.07 1.15 6.47 -51.93 -0.34 0.81 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.61 7.84 -51.93 -0.41 0.20 16 33 H 0.10 1.51 5.83 -51.93 -0.30 1.21 16 34 H 0.07 1.45 7.46 -51.93 -0.39 1.06 16 35 H 0.06 1.13 7.81 -51.93 -0.41 0.73 16 36 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 38 H 0.38 10.19 7.19 45.56 0.33 10.52 16 39 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.06 1.56 8.03 -51.93 -0.42 1.14 16 41 H 0.09 2.28 7.49 -51.93 -0.39 1.89 16 42 H 0.08 1.08 7.31 -51.93 -0.38 0.70 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.04 0.33 7.97 -51.93 -0.41 -0.08 16 46 H 0.02 0.17 7.98 -51.93 -0.41 -0.25 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.04 0.41 7.91 -51.92 -0.41 0.00 16 50 H 0.08 1.05 7.95 -51.93 -0.41 0.63 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -28.50 384.02 -8.72 -37.23 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -7.67 Total: 13.12 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: -0.32 Total: 14.44 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -1.15 Total: -50.95 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.34 Total: -34.80 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.50 -8.72 -37.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327399538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.716 kcal (2) G-P(sol) polarization free energy of solvation -28.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds