Wall clock time and date at job start Wed Apr 1 2020 00:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46964 * 2 1 4 4 C 1.34775 * 119.99658 * 274.07132 * 3 2 1 5 5 O 1.21348 * 120.00048 * 185.13449 * 4 3 2 6 6 C 1.49453 * 120.00282 * 5.13658 * 4 3 2 7 7 O 1.21354 * 119.99492 * 5.58357 * 6 4 3 8 8 N 1.34777 * 120.00242 * 185.58879 * 6 4 3 9 9 C 1.47020 * 125.64747 * 0.02562 * 8 6 4 10 10 C 1.54324 * 107.26901 * 181.02184 * 9 8 6 11 11 C 1.55158 * 102.94162 * 22.19206 * 10 9 8 12 12 O 1.42902 * 111.00528 * 82.60919 * 11 10 9 13 13 C 1.50700 * 111.00249 * 206.41849 * 11 10 9 14 14 H 1.07998 * 119.99854 * 354.76620 * 13 11 10 15 15 C 1.37877 * 119.99953 * 174.75988 * 13 11 10 16 16 N 1.31515 * 120.00196 * 4.74203 * 15 13 11 17 17 Si 1.86801 * 119.99994 * 184.75002 * 15 13 11 18 18 H 1.48497 * 109.47346 * 94.99241 * 17 15 13 19 19 H 1.48501 * 109.47287 * 214.99642 * 17 15 13 20 20 H 1.48503 * 109.46915 * 334.99442 * 17 15 13 21 21 C 1.47427 * 125.64516 * 179.71407 * 8 6 4 22 22 C 1.46499 * 120.00279 * 94.07588 * 3 2 1 23 23 H 1.09000 * 110.28846 * 2.12028 * 22 3 2 24 24 C 1.54264 * 110.31970 * 239.99762 * 22 3 2 25 25 C 1.54379 * 105.05919 * 241.09912 * 24 22 3 26 26 N 1.48566 * 104.59380 * 23.85552 * 25 24 22 27 27 C 1.46895 * 110.99992 * 200.95531 * 26 25 24 28 28 C 1.48561 * 104.22140 * 320.51923 * 26 25 24 29 29 H 1.09000 * 109.46593 * 60.00793 * 1 2 3 30 30 H 1.09007 * 109.47171 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47606 * 300.00833 * 1 2 3 32 32 H 1.09000 * 109.46593 * 119.99207 * 2 1 3 33 33 H 1.08993 * 109.47136 * 239.99131 * 2 1 3 34 34 H 1.09002 * 109.87708 * 300.43915 * 9 8 6 35 35 H 1.08999 * 109.88443 * 61.45246 * 9 8 6 36 36 H 1.09005 * 110.71699 * 140.55291 * 10 9 8 37 37 H 1.08997 * 110.72097 * 263.82344 * 10 9 8 38 38 H 0.96697 * 114.00229 * 179.97438 * 12 11 10 39 39 H 0.96998 * 120.00178 * 179.97438 * 16 15 13 40 40 H 1.08998 * 110.36897 * 274.74196 * 21 8 6 41 41 H 1.08994 * 110.36806 * 37.07399 * 21 8 6 42 42 H 1.09002 * 110.32562 * 359.97438 * 24 22 3 43 43 H 1.09000 * 110.32168 * 122.20679 * 24 22 3 44 44 H 1.09000 * 110.40803 * 142.62898 * 25 24 22 45 45 H 1.08996 * 110.41554 * 264.95949 * 25 24 22 46 46 H 1.09000 * 109.47214 * 59.87865 * 27 26 25 47 47 H 1.09002 * 109.46670 * 179.87107 * 27 26 25 48 48 H 1.08997 * 109.47301 * 299.87475 * 27 26 25 49 49 H 1.09008 * 110.40365 * 280.69916 * 28 26 25 50 50 H 1.08996 * 110.41181 * 158.26545 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1648 2.0441 -1.1643 5 8 2.6563 3.1536 -1.1731 6 6 1.7218 1.4129 -2.4445 7 8 1.1388 0.3487 -2.4263 8 7 1.9698 2.0255 -3.6191 9 6 2.6638 3.3109 -3.7854 10 6 2.6919 3.6243 -5.2962 11 6 1.5158 2.7765 -5.8489 12 8 0.2701 3.4555 -5.6775 13 6 1.7394 2.4214 -7.2962 14 1 2.5885 2.8263 -7.8266 15 6 0.8600 1.5793 -7.9433 16 7 -0.2236 1.1606 -7.3268 17 14 1.2078 1.0331 -9.6954 18 1 1.8987 -0.2812 -9.6763 19 1 -0.0719 0.9089 -10.4385 20 1 2.0731 2.0375 -10.3645 21 6 1.5957 1.5144 -4.9504 22 6 2.3475 2.0419 1.2655 23 1 2.2073 1.3534 2.0989 24 6 1.4743 3.2991 1.4565 25 6 2.4730 4.4743 1.5266 26 7 3.6804 3.9825 0.8142 27 6 4.8707 4.7500 1.2039 28 6 3.8003 2.5631 1.2362 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.8933 -0.5139 -0.8898 34 1 2.1241 4.0949 -3.2540 35 1 3.6810 3.2354 -3.4011 36 1 2.5186 4.6858 -5.4731 37 1 3.6366 3.3078 -5.7382 38 1 -0.4943 2.9643 -6.0085 39 1 -0.8425 0.5685 -7.7821 40 1 2.3579 0.8294 -5.3217 41 1 0.6264 1.0179 -4.9075 42 1 0.8011 3.4249 0.6084 43 1 0.9069 3.2286 2.3845 44 1 2.0649 5.3505 1.0228 45 1 2.7110 4.7095 2.5639 46 1 5.0315 4.6509 2.2774 47 1 5.7404 4.3678 0.6695 48 1 4.7234 5.8007 0.9540 49 1 4.2476 2.4980 2.2281 50 1 4.3916 2.0004 0.5138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327399538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:44 Heat of formation + Delta-G solvation = -90.514193 kcal Electronic energy + Delta-G solvation = -32234.053866 eV Core-core repulsion = 28069.052185 eV Total energy + Delta-G solvation = -4165.001681 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.01759 -40.51259 -39.13821 -38.41722 -36.94263 -35.80884 -34.20656 -32.84339 -31.87920 -30.97825 -29.70860 -29.37390 -27.58271 -26.53526 -25.41644 -24.19002 -23.37541 -22.02510 -21.70393 -21.40199 -19.68854 -19.14988 -18.25767 -17.70451 -17.26201 -17.11145 -17.00195 -16.55966 -16.27005 -16.05456 -15.72102 -15.37214 -14.93617 -14.92827 -14.66414 -14.60791 -14.50397 -13.92459 -13.82229 -13.64869 -13.50302 -13.36077 -13.18848 -13.00932 -12.86360 -12.68788 -12.62428 -12.53116 -12.38754 -12.35496 -12.25636 -12.11013 -12.09162 -11.99576 -11.89581 -11.56373 -11.19669 -10.67374 -10.39473 -10.05452 -9.76439 -9.46562 -9.05808 -8.26266 -6.42876 0.59092 1.38934 1.44227 1.45813 1.55555 2.31927 2.37138 2.49419 3.00176 3.21438 3.28779 3.68117 3.74821 3.80592 4.03100 4.09878 4.18013 4.24654 4.31430 4.35188 4.38248 4.47213 4.54674 4.60216 4.61481 4.68660 4.69312 4.72845 4.78018 4.88673 4.95293 4.98299 5.03451 5.05467 5.07658 5.11550 5.19847 5.22729 5.35237 5.43522 5.45087 5.65797 5.74592 6.03241 6.04520 6.16709 6.25400 6.45541 6.64556 6.81365 7.17696 7.28272 7.37954 8.79728 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018012 B = 0.003346 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.108805 B = 8365.583412 C = 9287.086274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.106 3.894 3 N -0.581 5.581 4 C 0.498 3.502 5 O -0.471 6.471 6 C 0.492 3.508 7 O -0.548 6.548 8 N -0.586 5.586 9 C 0.129 3.871 10 C -0.116 4.116 11 C 0.233 3.767 12 O -0.590 6.590 13 C -0.558 4.558 14 H 0.069 0.931 15 C 0.029 3.971 16 N -0.915 5.915 17 Si 0.965 3.035 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.266 1.266 21 C 0.110 3.890 22 C 0.142 3.858 23 H 0.136 0.864 24 C -0.129 4.129 25 C 0.043 3.957 26 N -0.511 5.511 27 C 0.018 3.982 28 C 0.032 3.968 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.376 0.624 39 H 0.271 0.729 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.045 0.955 43 H 0.101 0.899 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.038 0.962 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.073 0.927 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.851 0.885 21.154 22.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.016 4.016 3 N -0.316 5.316 4 C 0.279 3.721 5 O -0.342 6.342 6 C 0.277 3.723 7 O -0.428 6.428 8 N -0.319 5.319 9 C 0.007 3.993 10 C -0.154 4.154 11 C 0.193 3.807 12 O -0.399 6.399 13 C -0.596 4.596 14 H 0.088 0.912 15 C -0.172 4.172 16 N -0.554 5.554 17 Si 0.791 3.209 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.190 1.190 21 C -0.012 4.012 22 C 0.039 3.961 23 H 0.154 0.846 24 C -0.167 4.167 25 C -0.085 4.085 26 N -0.235 5.235 27 C -0.131 4.131 28 C -0.097 4.097 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.127 0.873 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.226 0.774 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.120 0.880 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.056 0.944 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.091 0.909 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.015 1.334 20.898 22.084 hybrid contribution -0.579 -0.946 -0.851 1.398 sum 6.436 0.388 20.047 21.058 Atomic orbital electron populations 1.22029 0.95869 1.02404 1.00775 1.21921 0.94927 0.80641 1.04095 1.47956 1.64281 1.14819 1.04580 1.19830 0.81026 0.86579 0.84674 1.90933 1.39437 1.17940 1.85881 1.20650 0.81169 0.85315 0.85192 1.90649 1.42635 1.22585 1.86937 1.48666 1.54676 1.22675 1.05883 1.21995 0.96694 0.84028 0.96618 1.22714 0.98404 1.00964 0.93275 1.19888 0.82197 0.86718 0.91906 1.86095 1.18417 1.49894 1.85483 1.21786 1.11714 1.29635 0.96430 0.91245 1.25816 0.94216 0.94860 1.02339 1.69745 1.11834 1.34507 1.39343 0.85425 0.77707 0.78606 0.79203 1.20131 1.20866 1.19034 1.22953 0.98813 0.99219 0.80229 1.22178 0.93986 0.95027 0.84868 0.84600 1.22682 0.97730 0.93935 1.02385 1.22972 0.91154 0.97627 0.96735 1.65496 1.02872 1.01801 1.53288 1.22479 0.93195 0.98812 0.98570 1.23388 0.96113 0.90581 0.99612 0.95407 0.90951 0.91748 0.87275 0.90734 0.91753 0.90350 0.90077 0.89128 0.77373 0.91943 0.92831 0.92995 0.93612 0.88034 0.91918 0.92191 0.94387 0.92046 0.91722 0.90903 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.67 71.98 0.70 -3.02 16 2 C 0.11 2.44 5.68 86.38 0.49 2.93 16 3 N -0.58 -14.80 2.41 -794.44 -1.92 -16.72 16 4 C 0.50 16.92 6.68 87.27 0.58 17.51 16 5 O -0.47 -16.69 10.24 -3.24 -0.03 -16.72 16 6 C 0.49 20.26 7.68 87.27 0.67 20.93 16 7 O -0.55 -23.83 11.67 -3.26 -0.04 -23.86 16 8 N -0.59 -25.73 3.32 -812.92 -2.70 -28.43 16 9 C 0.13 5.11 5.50 86.73 0.48 5.59 16 10 C -0.12 -4.82 6.12 31.78 0.19 -4.63 16 11 C 0.23 11.68 0.89 -10.07 -0.01 11.67 16 12 O -0.59 -31.66 13.20 -148.98 -1.97 -33.63 16 13 C -0.56 -29.34 8.26 25.60 0.21 -29.13 16 14 H 0.07 3.55 7.79 -2.91 -0.02 3.52 16 15 C 0.03 1.50 5.26 84.65 0.44 1.94 16 16 N -0.92 -49.63 10.70 21.45 0.23 -49.40 16 17 Si 0.97 41.66 29.54 68.60 2.03 43.68 16 18 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 21 C 0.11 5.48 5.51 86.93 0.48 5.96 16 22 C 0.14 2.62 3.58 45.89 0.16 2.78 16 23 H 0.14 1.48 7.78 -2.39 -0.02 1.46 16 24 C -0.13 -2.48 6.09 31.49 0.19 -2.29 16 25 C 0.04 0.86 6.33 86.45 0.55 1.40 16 26 N -0.51 -11.83 3.28 -907.64 -2.98 -14.80 16 27 C 0.02 0.34 9.53 127.69 1.22 1.55 16 28 C 0.03 0.62 5.40 86.45 0.47 1.08 16 29 H 0.03 0.91 6.47 -2.39 -0.02 0.89 16 30 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.11 1.59 7.84 -2.39 -0.02 1.58 16 33 H 0.07 2.18 5.83 -2.39 -0.01 2.17 16 34 H 0.06 2.64 7.46 -2.39 -0.02 2.62 16 35 H 0.08 2.84 7.81 -2.39 -0.02 2.82 16 36 H 0.08 3.25 8.14 -2.38 -0.02 3.23 16 37 H 0.09 3.48 8.03 -2.39 -0.02 3.46 16 38 H 0.38 20.94 7.19 -74.06 -0.53 20.41 16 39 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 40 H 0.05 2.71 8.03 -2.39 -0.02 2.69 16 41 H 0.05 2.90 7.49 -2.39 -0.02 2.88 16 42 H 0.04 1.21 7.31 -2.39 -0.02 1.19 16 43 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.06 0.90 7.97 -2.39 -0.02 0.88 16 46 H 0.04 0.55 7.98 -2.39 -0.02 0.53 16 47 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.07 1.01 7.91 -2.38 -0.02 0.99 16 50 H 0.06 1.46 7.95 -2.39 -0.02 1.44 16 Total: -1.00 -64.32 384.02 -0.15 -64.47 By element: Atomic # 1 Polarization: 40.73 SS G_CDS: 0.41 Total: 41.14 kcal Atomic # 6 Polarization: 27.46 SS G_CDS: 6.83 Total: 34.28 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -7.37 Total: -109.35 kcal Atomic # 8 Polarization: -72.18 SS G_CDS: -2.04 Total: -74.22 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -64.32 -0.15 -64.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327399538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.047 kcal (2) G-P(sol) polarization free energy of solvation -64.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds