Wall clock time and date at job start Wed Apr 1 2020 00:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47112 * 2 1 4 4 C 1.34771 * 119.99983 * 276.74108 * 3 2 1 5 5 O 1.21349 * 120.00353 * 176.55333 * 4 3 2 6 6 C 1.49450 * 120.00011 * 356.55754 * 4 3 2 7 7 O 1.21358 * 120.00072 * 5.67774 * 6 4 3 8 8 N 1.34779 * 120.00245 * 185.67656 * 6 4 3 9 9 C 1.47424 * 125.64796 * 0.02852 * 8 6 4 10 10 C 1.54904 * 104.83431 * 204.09055 * 9 8 6 11 11 C 1.55158 * 101.57918 * 322.98938 * 10 9 8 12 12 O 1.42905 * 110.71884 * 277.13909 * 11 10 9 13 13 C 1.50698 * 110.72264 * 154.04632 * 11 10 9 14 14 H 1.08005 * 119.99904 * 359.97438 * 13 11 10 15 15 C 1.37874 * 120.00214 * 179.97438 * 13 11 10 16 16 N 1.31515 * 120.00254 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 120.00003 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47094 * 89.99898 * 17 15 13 19 19 H 1.48505 * 109.46947 * 210.00101 * 17 15 13 20 20 H 1.48499 * 109.47161 * 329.99878 * 17 15 13 21 21 C 1.47025 * 125.65084 * 179.71546 * 8 6 4 22 22 C 1.46498 * 119.99972 * 96.74175 * 3 2 1 23 23 H 1.09000 * 110.78191 * 356.74990 * 22 3 2 24 24 C 1.54595 * 110.72288 * 119.99890 * 22 3 2 25 25 C 1.53992 * 105.13708 * 140.31688 * 24 22 3 26 26 N 1.47898 * 107.06188 * 1.22169 * 25 24 22 27 27 C 1.46900 * 111.00490 * 214.15802 * 26 25 24 28 28 C 1.48533 * 105.82052 * 334.67400 * 26 25 24 29 29 H 1.09008 * 109.46847 * 60.00263 * 1 2 3 30 30 H 1.09001 * 109.47150 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47754 * 300.00411 * 1 2 3 32 32 H 1.08993 * 109.47052 * 239.99734 * 2 1 3 33 33 H 1.09005 * 109.46485 * 120.00110 * 2 1 3 34 34 H 1.09001 * 110.36349 * 322.93050 * 9 8 6 35 35 H 1.09001 * 110.36874 * 85.24840 * 9 8 6 36 36 H 1.08994 * 111.00791 * 81.06241 * 10 9 8 37 37 H 1.09000 * 111.00874 * 204.91501 * 10 9 8 38 38 H 0.96700 * 114.00388 * 179.97438 * 12 11 10 39 39 H 0.96996 * 120.00240 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.87863 * 298.39758 * 21 8 6 41 41 H 1.08998 * 109.88145 * 59.55801 * 21 8 6 42 42 H 1.08995 * 110.30826 * 21.40163 * 24 22 3 43 43 H 1.08997 * 110.39314 * 259.27266 * 24 22 3 44 44 H 1.09000 * 109.91479 * 241.86893 * 25 24 22 45 45 H 1.09000 * 109.91703 * 120.58335 * 25 24 22 46 46 H 1.09001 * 109.46889 * 59.87153 * 27 26 25 47 47 H 1.09002 * 109.46975 * 299.87456 * 27 26 25 48 48 H 1.08996 * 109.47151 * 179.87501 * 27 26 25 49 49 H 1.08994 * 110.66929 * 157.63829 * 28 26 25 50 50 H 1.09003 * 110.66780 * 280.77023 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1138 2.0622 -1.1591 5 8 2.4585 3.2257 -1.1527 6 6 1.7951 1.3845 -2.4524 7 8 1.3520 0.2547 -2.4523 8 7 1.9996 2.0280 -3.6188 9 6 2.5306 3.3956 -3.7640 10 6 2.0071 3.8804 -5.1389 11 6 2.0912 2.5796 -5.9805 12 8 3.4150 2.3874 -6.4832 13 6 1.0934 2.6094 -7.1094 14 1 0.4471 3.4654 -7.2364 15 6 1.0056 1.5441 -7.9802 16 7 1.7929 0.5021 -7.8260 17 14 -0.2318 1.5808 -9.3792 18 1 0.3959 2.1898 -10.5793 19 1 -0.6630 0.1953 -9.6951 20 1 -1.4120 2.3865 -8.9751 21 6 1.7363 1.4800 -4.9575 22 6 2.4029 2.0222 1.2599 23 1 2.2130 1.3599 2.1045 24 6 3.8877 2.4514 1.2244 25 6 3.9268 3.8224 1.9246 26 7 2.5457 4.1289 2.3559 27 6 2.2761 5.5706 2.2738 28 6 1.6573 3.3683 1.4402 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.1526 4.0358 -2.9669 35 1 3.6205 3.3822 -3.7562 36 1 0.9779 4.2311 -5.0636 37 1 2.6530 4.6553 -5.5518 38 1 3.5212 1.5875 -7.0160 39 1 1.7314 -0.2473 -8.4388 40 1 2.3565 0.5997 -5.1262 41 1 0.6826 1.2167 -5.0495 42 1 4.2304 2.5431 0.1938 43 1 4.5038 1.7329 1.7650 44 1 4.2763 4.5849 1.2286 45 1 4.5855 3.7777 2.7919 46 1 2.4056 5.9064 1.2449 47 1 2.9697 6.1074 2.9211 48 1 1.2532 5.7679 2.5944 49 1 0.6804 3.2088 1.8965 50 1 1.5574 3.8837 0.4850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327399540.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:52 Heat of formation + Delta-G solvation = -82.613903 kcal Electronic energy + Delta-G solvation = -31862.540052 eV Core-core repulsion = 27697.880953 eV Total energy + Delta-G solvation = -4164.659099 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.99513 -39.25575 -37.89560 -37.34376 -35.91061 -34.22196 -32.21565 -32.09755 -30.22804 -30.01763 -28.68803 -27.95968 -26.20918 -25.41124 -24.15109 -22.94798 -22.26054 -21.24185 -20.74025 -19.60670 -18.63279 -17.26524 -17.13596 -16.71199 -16.10995 -15.82044 -15.68680 -15.27648 -15.00729 -14.61832 -14.36616 -14.10634 -13.95515 -13.86574 -13.64580 -13.07489 -13.02559 -12.93577 -12.90898 -12.67799 -12.39705 -12.02639 -11.89714 -11.74919 -11.71064 -11.58494 -11.52486 -11.49822 -11.14549 -11.08602 -11.04666 -10.81095 -10.63959 -10.52594 -10.33512 -10.15746 -9.37106 -9.02031 -8.78426 -8.69410 -8.52742 -8.37302 -8.01607 -6.34816 -4.43379 1.72181 2.46810 3.17850 3.25535 3.28296 3.49869 3.60345 4.00015 4.22457 4.40210 4.51148 4.58593 4.81981 4.93311 5.01243 5.11814 5.17077 5.28524 5.34851 5.37438 5.46632 5.51587 5.54133 5.66572 5.70146 5.71464 5.80382 5.85277 5.87060 5.87516 5.94150 6.01810 6.05621 6.25113 6.28541 6.45116 6.48363 6.70016 6.73070 6.77341 6.80564 6.81908 7.10489 7.16704 7.28458 7.68123 7.77319 7.96319 8.01074 8.40717 8.60429 9.25867 9.38981 10.72965 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018292 B = 0.003090 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.318346 B = 9058.484338 C = 9767.485167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.093 3.907 3 N -0.582 5.582 4 C 0.512 3.488 5 O -0.515 6.515 6 C 0.504 3.496 7 O -0.529 6.529 8 N -0.574 5.574 9 C 0.097 3.903 10 C -0.121 4.121 11 C 0.249 3.751 12 O -0.585 6.585 13 C -0.537 4.537 14 H 0.068 0.932 15 C 0.070 3.930 16 N -0.897 5.897 17 Si 0.905 3.095 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.099 3.901 22 C 0.145 3.855 23 H 0.105 0.895 24 C -0.140 4.140 25 C 0.043 3.957 26 N -0.520 5.520 27 C 0.017 3.983 28 C 0.014 3.986 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.117 0.883 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.386 0.614 39 H 0.271 0.729 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.049 0.951 45 H 0.077 0.923 46 H 0.033 0.967 47 H 0.067 0.933 48 H 0.067 0.933 49 H 0.078 0.922 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.446 2.595 18.307 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.029 4.029 3 N -0.316 5.316 4 C 0.296 3.704 5 O -0.392 6.392 6 C 0.287 3.713 7 O -0.408 6.408 8 N -0.306 5.306 9 C -0.025 4.025 10 C -0.159 4.159 11 C 0.208 3.792 12 O -0.395 6.395 13 C -0.575 4.575 14 H 0.086 0.914 15 C -0.133 4.133 16 N -0.536 5.536 17 Si 0.732 3.268 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.022 4.022 22 C 0.041 3.959 23 H 0.123 0.877 24 C -0.179 4.179 25 C -0.086 4.086 26 N -0.244 5.244 27 C -0.132 4.132 28 C -0.114 4.114 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.135 0.865 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.238 0.762 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.052 0.948 47 H 0.086 0.914 48 H 0.085 0.915 49 H 0.096 0.904 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.452 2.816 19.141 19.402 hybrid contribution -0.655 -0.442 -1.830 1.994 sum 0.797 2.374 17.311 17.491 Atomic orbital electron populations 1.22068 0.95461 1.02332 1.01776 1.22184 0.95261 0.80826 1.04614 1.47882 1.63445 1.14907 1.05332 1.20403 0.78296 0.86464 0.85217 1.90621 1.45705 1.16059 1.86775 1.19595 0.81328 0.86220 0.84200 1.90630 1.45942 1.17952 1.86295 1.48698 1.59104 1.16660 1.06092 1.22655 0.98627 0.82198 0.98998 1.22818 1.00948 0.98806 0.93290 1.19496 0.82163 0.87969 0.89569 1.86094 1.30903 1.50149 1.72383 1.21535 1.20028 1.04025 1.11907 0.91386 1.25082 0.95760 0.94707 0.97721 1.69566 1.38672 1.07243 1.38122 0.86373 0.81132 0.77477 0.81781 1.20327 1.20962 1.19671 1.23250 1.01470 0.99317 0.78154 1.22026 0.94204 0.94438 0.85266 0.87741 1.22747 0.96198 0.96842 1.02110 1.22760 0.91011 0.96273 0.98509 1.64725 1.03253 1.07669 1.48784 1.22492 1.02033 0.88233 1.00402 1.23727 0.96489 0.94008 0.97201 0.91889 0.91538 0.93425 0.86550 0.91148 0.89323 0.91618 0.90570 0.90363 0.76213 0.91851 0.91242 0.91039 0.90244 0.90804 0.93246 0.90480 0.94843 0.91447 0.91451 0.90354 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.73 37.16 0.36 -1.50 16 2 C 0.09 1.11 5.71 -4.04 -0.02 1.09 16 3 N -0.58 -7.62 2.56 -164.50 -0.42 -8.04 16 4 C 0.51 8.29 6.75 -11.59 -0.08 8.21 16 5 O -0.52 -8.67 10.12 5.50 0.06 -8.61 16 6 C 0.50 9.60 7.69 -11.58 -0.09 9.51 16 7 O -0.53 -10.54 12.14 5.49 0.07 -10.47 16 8 N -0.57 -11.76 3.33 -171.02 -0.57 -12.33 16 9 C 0.10 1.85 6.15 -2.53 -0.02 1.83 16 10 C -0.12 -2.45 6.23 -24.58 -0.15 -2.61 16 11 C 0.25 5.94 0.86 -89.94 -0.08 5.87 16 12 O -0.59 -14.67 13.07 -35.23 -0.46 -15.13 16 13 C -0.54 -13.79 8.12 -34.44 -0.28 -14.07 16 14 H 0.07 1.72 7.76 -52.48 -0.41 1.31 16 15 C 0.07 1.79 5.28 -17.82 -0.09 1.70 16 16 N -0.90 -23.26 10.97 55.43 0.61 -22.65 16 17 Si 0.91 20.07 29.54 -169.99 -5.02 15.05 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 C 0.10 2.32 5.54 -3.06 -0.02 2.30 16 22 C 0.14 1.61 3.54 -66.07 -0.23 1.38 16 23 H 0.10 0.98 7.82 -51.93 -0.41 0.57 16 24 C -0.14 -1.53 6.19 -25.38 -0.16 -1.69 16 25 C 0.04 0.45 6.70 -2.76 -0.02 0.43 16 26 N -0.52 -5.70 5.55 -238.72 -1.33 -7.03 16 27 C 0.02 0.17 9.40 60.06 0.56 0.73 16 28 C 0.01 0.17 5.88 -1.90 -0.01 0.16 16 29 H 0.06 0.92 6.99 -51.92 -0.36 0.55 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.12 1.67 5.42 -51.93 -0.28 1.39 16 33 H 0.07 0.64 7.85 -51.93 -0.41 0.24 16 34 H 0.09 1.58 6.02 -51.93 -0.31 1.27 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 37 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.39 9.91 6.98 45.56 0.32 10.22 16 39 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 40 H 0.07 1.75 8.07 -51.93 -0.42 1.33 16 41 H 0.07 1.79 7.82 -51.93 -0.41 1.38 16 42 H 0.08 1.06 6.55 -51.93 -0.34 0.72 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.56 7.73 -51.93 -0.40 0.16 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.03 0.36 8.00 -51.93 -0.42 -0.06 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 50 H 0.08 1.15 5.34 -51.93 -0.28 0.87 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -27.22 384.31 -9.07 -36.29 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -7.48 Total: 13.79 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: -0.32 Total: 13.34 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -1.71 Total: -50.05 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.34 Total: -34.21 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -27.22 -9.07 -36.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327399540.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.326 kcal (2) G-P(sol) polarization free energy of solvation -27.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds