Wall clock time and date at job start Wed Apr 1 2020 00:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47112 * 2 1 4 4 C 1.34771 * 119.99983 * 276.74108 * 3 2 1 5 5 O 1.21349 * 120.00353 * 176.55333 * 4 3 2 6 6 C 1.49450 * 120.00011 * 356.55754 * 4 3 2 7 7 O 1.21358 * 120.00072 * 5.67774 * 6 4 3 8 8 N 1.34779 * 120.00245 * 185.67656 * 6 4 3 9 9 C 1.47424 * 125.64796 * 0.02852 * 8 6 4 10 10 C 1.54904 * 104.83431 * 204.09055 * 9 8 6 11 11 C 1.55158 * 101.57918 * 322.98938 * 10 9 8 12 12 O 1.42905 * 110.71884 * 277.13909 * 11 10 9 13 13 C 1.50698 * 110.72264 * 154.04632 * 11 10 9 14 14 H 1.08005 * 119.99904 * 359.97438 * 13 11 10 15 15 C 1.37874 * 120.00214 * 179.97438 * 13 11 10 16 16 N 1.31515 * 120.00254 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 120.00003 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47094 * 89.99898 * 17 15 13 19 19 H 1.48505 * 109.46947 * 210.00101 * 17 15 13 20 20 H 1.48499 * 109.47161 * 329.99878 * 17 15 13 21 21 C 1.47025 * 125.65084 * 179.71546 * 8 6 4 22 22 C 1.46498 * 119.99972 * 96.74175 * 3 2 1 23 23 H 1.09000 * 110.78191 * 356.74990 * 22 3 2 24 24 C 1.54595 * 110.72288 * 119.99890 * 22 3 2 25 25 C 1.53992 * 105.13708 * 140.31688 * 24 22 3 26 26 N 1.47898 * 107.06188 * 1.22169 * 25 24 22 27 27 C 1.46900 * 111.00490 * 214.15802 * 26 25 24 28 28 C 1.48533 * 105.82052 * 334.67400 * 26 25 24 29 29 H 1.09008 * 109.46847 * 60.00263 * 1 2 3 30 30 H 1.09001 * 109.47150 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47754 * 300.00411 * 1 2 3 32 32 H 1.08993 * 109.47052 * 239.99734 * 2 1 3 33 33 H 1.09005 * 109.46485 * 120.00110 * 2 1 3 34 34 H 1.09001 * 110.36349 * 322.93050 * 9 8 6 35 35 H 1.09001 * 110.36874 * 85.24840 * 9 8 6 36 36 H 1.08994 * 111.00791 * 81.06241 * 10 9 8 37 37 H 1.09000 * 111.00874 * 204.91501 * 10 9 8 38 38 H 0.96700 * 114.00388 * 179.97438 * 12 11 10 39 39 H 0.96996 * 120.00240 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.87863 * 298.39758 * 21 8 6 41 41 H 1.08998 * 109.88145 * 59.55801 * 21 8 6 42 42 H 1.08995 * 110.30826 * 21.40163 * 24 22 3 43 43 H 1.08997 * 110.39314 * 259.27266 * 24 22 3 44 44 H 1.09000 * 109.91479 * 241.86893 * 25 24 22 45 45 H 1.09000 * 109.91703 * 120.58335 * 25 24 22 46 46 H 1.09001 * 109.46889 * 59.87153 * 27 26 25 47 47 H 1.09002 * 109.46975 * 299.87456 * 27 26 25 48 48 H 1.08996 * 109.47151 * 179.87501 * 27 26 25 49 49 H 1.08994 * 110.66929 * 157.63829 * 28 26 25 50 50 H 1.09003 * 110.66780 * 280.77023 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1138 2.0622 -1.1591 5 8 2.4585 3.2257 -1.1527 6 6 1.7951 1.3845 -2.4524 7 8 1.3520 0.2547 -2.4523 8 7 1.9996 2.0280 -3.6188 9 6 2.5306 3.3956 -3.7640 10 6 2.0071 3.8804 -5.1389 11 6 2.0912 2.5796 -5.9805 12 8 3.4150 2.3874 -6.4832 13 6 1.0934 2.6094 -7.1094 14 1 0.4471 3.4654 -7.2364 15 6 1.0056 1.5441 -7.9802 16 7 1.7929 0.5021 -7.8260 17 14 -0.2318 1.5808 -9.3792 18 1 0.3959 2.1898 -10.5793 19 1 -0.6630 0.1953 -9.6951 20 1 -1.4120 2.3865 -8.9751 21 6 1.7363 1.4800 -4.9575 22 6 2.4029 2.0222 1.2599 23 1 2.2130 1.3599 2.1045 24 6 3.8877 2.4514 1.2244 25 6 3.9268 3.8224 1.9246 26 7 2.5457 4.1289 2.3559 27 6 2.2761 5.5706 2.2738 28 6 1.6573 3.3683 1.4402 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.1526 4.0358 -2.9669 35 1 3.6205 3.3822 -3.7562 36 1 0.9779 4.2311 -5.0636 37 1 2.6530 4.6553 -5.5518 38 1 3.5212 1.5875 -7.0160 39 1 1.7314 -0.2473 -8.4388 40 1 2.3565 0.5997 -5.1262 41 1 0.6826 1.2167 -5.0495 42 1 4.2304 2.5431 0.1938 43 1 4.5038 1.7329 1.7650 44 1 4.2763 4.5849 1.2286 45 1 4.5855 3.7777 2.7919 46 1 2.4056 5.9064 1.2449 47 1 2.9697 6.1074 2.9211 48 1 1.2532 5.7679 2.5944 49 1 0.6804 3.2088 1.8965 50 1 1.5574 3.8837 0.4850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327399540.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:51 Heat of formation + Delta-G solvation = -102.348741 kcal Electronic energy + Delta-G solvation = -31863.395819 eV Core-core repulsion = 27697.880953 eV Total energy + Delta-G solvation = -4165.514866 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.26090 -40.62451 -39.27936 -38.73403 -37.15393 -35.93116 -34.20044 -32.98158 -31.90929 -31.00889 -29.84517 -29.55795 -27.71898 -26.61115 -25.46375 -24.28083 -23.48563 -22.21916 -21.86600 -21.41543 -19.96644 -19.18996 -18.44658 -17.91136 -17.32825 -17.28568 -17.09313 -16.79192 -16.26174 -16.18095 -15.79678 -15.10866 -14.99135 -14.89887 -14.78695 -14.75511 -14.72385 -14.50826 -14.08206 -13.80745 -13.68515 -13.54226 -13.45340 -13.02348 -12.89309 -12.71061 -12.66214 -12.51450 -12.49027 -12.38175 -12.37189 -12.30809 -12.22933 -12.10896 -11.89606 -11.45308 -11.18727 -10.68451 -10.42343 -10.21497 -9.95956 -9.63203 -9.43499 -8.29767 -6.45689 0.32743 1.18919 1.41561 1.43491 1.52871 2.07633 2.27291 2.37858 2.95855 3.02846 3.19618 3.59749 3.66498 3.76770 3.94018 4.03055 4.12578 4.15269 4.28452 4.30950 4.33217 4.38846 4.48555 4.53427 4.56698 4.59233 4.65475 4.70865 4.76673 4.86095 4.91581 4.95479 4.98059 4.99558 5.03757 5.06365 5.11592 5.13501 5.29244 5.32940 5.41997 5.49086 5.71319 5.82617 5.94445 5.97142 6.00189 6.32718 6.56461 6.64245 6.91986 7.26207 7.36120 8.76717 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018292 B = 0.003090 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.318346 B = 9058.484338 C = 9767.485167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.091 3.909 3 N -0.569 5.569 4 C 0.516 3.484 5 O -0.524 6.524 6 C 0.497 3.503 7 O -0.540 6.540 8 N -0.585 5.585 9 C 0.110 3.890 10 C -0.115 4.115 11 C 0.235 3.765 12 O -0.590 6.590 13 C -0.558 4.558 14 H 0.067 0.933 15 C 0.028 3.972 16 N -0.915 5.915 17 Si 0.965 3.035 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.269 1.269 21 C 0.119 3.881 22 C 0.143 3.857 23 H 0.137 0.863 24 C -0.138 4.138 25 C 0.044 3.956 26 N -0.519 5.519 27 C 0.017 3.983 28 C 0.015 3.985 29 H 0.027 0.973 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.380 0.620 39 H 0.273 0.727 40 H 0.042 0.958 41 H 0.046 0.954 42 H 0.052 0.948 43 H 0.097 0.903 44 H 0.035 0.965 45 H 0.097 0.903 46 H 0.018 0.982 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.088 0.912 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.205 2.833 20.723 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.030 4.030 3 N -0.301 5.301 4 C 0.298 3.702 5 O -0.401 6.401 6 C 0.281 3.719 7 O -0.420 6.420 8 N -0.318 5.318 9 C -0.012 4.012 10 C -0.153 4.153 11 C 0.194 3.806 12 O -0.399 6.399 13 C -0.597 4.597 14 H 0.085 0.915 15 C -0.173 4.173 16 N -0.555 5.555 17 Si 0.790 3.210 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.004 4.004 22 C 0.041 3.959 23 H 0.154 0.846 24 C -0.177 4.177 25 C -0.085 4.085 26 N -0.243 5.243 27 C -0.132 4.132 28 C -0.113 4.113 29 H 0.046 0.954 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.231 0.769 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.115 0.885 44 H 0.054 0.946 45 H 0.115 0.885 46 H 0.036 0.964 47 H 0.101 0.899 48 H 0.093 0.907 49 H 0.106 0.894 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.214 3.055 21.605 21.853 hybrid contribution -0.574 -0.566 -2.500 2.626 sum 0.640 2.489 19.105 19.277 Atomic orbital electron populations 1.22012 0.95186 1.02936 1.00941 1.22248 0.95414 0.80074 1.05301 1.47930 1.62019 1.15165 1.04984 1.19812 0.79066 0.86333 0.84968 1.90622 1.46548 1.16227 1.86725 1.20308 0.80434 0.86159 0.84980 1.90632 1.45937 1.18604 1.86820 1.48716 1.60178 1.17274 1.05607 1.22597 0.98391 0.81552 0.98628 1.22811 1.01783 0.97431 0.93238 1.19692 0.81359 0.89815 0.89700 1.86083 1.31740 1.49776 1.72345 1.21815 1.20668 1.04272 1.12898 0.91462 1.25797 0.97298 0.94376 0.99799 1.69658 1.39559 1.07556 1.38720 0.85441 0.79104 0.77376 0.79052 1.19877 1.20819 1.19301 1.22731 0.99124 0.98361 0.80170 1.22314 0.94235 0.94718 0.84676 0.84553 1.22738 0.96256 0.97780 1.00917 1.22802 0.91129 0.95579 0.98942 1.64794 1.03237 1.08188 1.48082 1.22534 1.03018 0.87747 0.99854 1.23662 0.97331 0.94174 0.96152 0.95364 0.90295 0.91467 0.89225 0.87054 0.87840 0.91803 0.89840 0.89331 0.76944 0.91776 0.93994 0.93532 0.92932 0.88450 0.94625 0.88489 0.96357 0.89938 0.90666 0.89399 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.73 71.98 0.70 -2.63 16 2 C 0.09 1.98 5.71 86.38 0.49 2.48 16 3 N -0.57 -13.93 2.56 -792.73 -2.03 -15.95 16 4 C 0.52 16.52 6.75 87.27 0.59 17.11 16 5 O -0.52 -17.49 10.12 -3.24 -0.03 -17.52 16 6 C 0.50 19.34 7.69 87.27 0.67 20.02 16 7 O -0.54 -22.17 12.14 -3.27 -0.04 -22.21 16 8 N -0.59 -24.67 3.33 -813.35 -2.70 -27.38 16 9 C 0.11 4.20 6.15 86.85 0.53 4.73 16 10 C -0.11 -4.68 6.23 31.98 0.20 -4.48 16 11 C 0.23 11.50 0.86 -10.35 -0.01 11.50 16 12 O -0.59 -30.38 13.07 -148.98 -1.95 -32.32 16 13 C -0.56 -29.20 8.12 25.60 0.21 -28.99 16 14 H 0.07 3.44 7.76 -2.91 -0.02 3.41 16 15 C 0.03 1.46 5.28 84.65 0.45 1.90 16 16 N -0.92 -48.66 10.97 21.45 0.24 -48.42 16 17 Si 0.97 41.44 29.54 68.60 2.03 43.47 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 C 0.12 5.80 5.54 86.73 0.48 6.28 16 22 C 0.14 2.78 3.54 46.20 0.16 2.94 16 23 H 0.14 1.88 7.82 -2.39 -0.02 1.86 16 24 C -0.14 -2.69 6.19 31.47 0.19 -2.49 16 25 C 0.04 0.82 6.70 86.45 0.58 1.39 16 26 N -0.52 -10.12 5.55 -909.18 -5.05 -15.16 16 27 C 0.02 0.30 9.40 127.69 1.20 1.50 16 28 C 0.02 0.33 5.88 86.65 0.51 0.84 16 29 H 0.03 0.80 6.99 -2.38 -0.02 0.79 16 30 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 2.52 5.42 -2.39 -0.01 2.51 16 33 H 0.11 1.58 7.85 -2.38 -0.02 1.56 16 34 H 0.10 3.66 6.02 -2.39 -0.01 3.65 16 35 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.08 3.25 8.03 -2.39 -0.02 3.23 16 37 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 38 H 0.38 20.23 6.98 -74.06 -0.52 19.72 16 39 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 40 H 0.04 2.23 8.07 -2.39 -0.02 2.21 16 41 H 0.05 2.45 7.82 -2.39 -0.02 2.43 16 42 H 0.05 1.33 6.55 -2.39 -0.02 1.32 16 43 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.04 0.76 7.73 -2.39 -0.02 0.74 16 45 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.02 0.37 8.00 -2.39 -0.02 0.35 16 47 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.05 1.46 5.34 -2.39 -0.01 1.44 16 Total: -1.00 -60.26 384.31 -2.15 -62.41 By element: Atomic # 1 Polarization: 40.58 SS G_CDS: 0.43 Total: 41.01 kcal Atomic # 6 Polarization: 25.13 SS G_CDS: 6.96 Total: 32.09 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -9.54 Total: -106.92 kcal Atomic # 8 Polarization: -70.04 SS G_CDS: -2.02 Total: -72.06 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -60.26 -2.15 -62.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327399540.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.943 kcal (2) G-P(sol) polarization free energy of solvation -60.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds