Wall clock time and date at job start Tue Mar 31 2020 23:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47505 * 2 1 4 4 C 1.46196 * 110.99842 * 64.98549 * 3 2 1 5 5 C 1.51276 * 109.10106 * 144.77422 * 4 3 2 6 6 C 1.54176 * 109.77596 * 92.31283 * 5 4 3 7 7 N 1.47615 * 111.09262 * 320.24101 * 6 5 4 8 8 C 1.34770 * 118.74810 * 138.19785 * 7 6 5 9 9 O 1.21349 * 119.99990 * 5.81811 * 8 7 6 10 10 C 1.49450 * 120.00023 * 185.81042 * 8 7 6 11 11 O 1.21351 * 120.00166 * 6.02358 * 10 8 7 12 12 N 1.34779 * 120.00150 * 186.01233 * 10 8 7 13 13 C 1.47028 * 125.64564 * 0.03502 * 12 10 8 14 14 C 1.54320 * 107.26833 * 181.01094 * 13 12 10 15 15 C 1.55157 * 102.94605 * 22.18771 * 14 13 12 16 16 O 1.42907 * 111.00140 * 82.57190 * 15 14 13 17 17 C 1.50702 * 111.00686 * 206.38558 * 15 14 13 18 18 H 1.08004 * 119.99652 * 0.02562 * 17 15 14 19 19 C 1.37876 * 120.00046 * 180.02562 * 17 15 14 20 20 N 1.31514 * 119.99801 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99925 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47277 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47238 * 120.00121 * 21 19 17 24 24 H 1.48499 * 109.46730 * 240.00226 * 21 19 17 25 25 C 1.47417 * 125.65079 * 179.97438 * 12 10 8 26 26 C 1.44884 * 122.50387 * 317.92527 * 7 6 5 27 27 C 1.41440 * 111.00077 * 293.95538 * 3 2 1 28 28 H 1.09003 * 109.46897 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47145 * 300.00262 * 1 2 3 30 30 H 1.08995 * 109.46967 * 60.00266 * 1 2 3 31 31 H 1.08997 * 109.47145 * 239.99738 * 2 1 3 32 32 H 1.09001 * 109.47415 * 120.00284 * 2 1 3 33 33 H 1.09001 * 109.53438 * 264.66563 * 4 3 2 34 34 H 1.08997 * 109.53251 * 24.89079 * 4 3 2 35 35 H 1.09004 * 109.44735 * 212.45684 * 5 4 3 36 36 H 1.09003 * 109.44557 * 332.39126 * 5 4 3 37 37 H 1.08997 * 109.30978 * 199.77771 * 6 5 4 38 38 H 1.08996 * 109.12533 * 80.58667 * 6 5 4 39 39 H 1.08992 * 109.88289 * 61.59142 * 13 12 10 40 40 H 1.09001 * 109.88035 * 300.42646 * 13 12 10 41 41 H 1.09000 * 110.71879 * 140.55685 * 14 13 12 42 42 H 1.09005 * 110.71890 * 263.64505 * 14 13 12 43 43 H 0.96698 * 113.99638 * 179.97438 * 16 15 14 44 44 H 0.97003 * 119.99758 * 179.97438 * 20 19 17 45 45 H 1.08999 * 110.36718 * 37.08116 * 25 12 10 46 46 H 1.09002 * 110.46236 * 274.80530 * 25 12 10 47 47 H 1.09004 * 109.43852 * 210.06919 * 26 7 6 48 48 H 1.09000 * 109.44063 * 329.97935 * 26 7 6 49 49 H 1.09002 * 109.38852 * 71.52459 * 27 3 2 50 50 H 1.09000 * 109.38577 * 311.84481 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6503 2.0713 1.2368 5 6 2.7599 3.0234 1.6251 6 6 2.4800 4.4195 1.0339 7 7 1.9326 4.3175 -0.3332 8 6 0.9165 5.1292 -0.6868 9 8 0.5388 5.9954 0.0745 10 6 0.2550 4.9625 -2.0165 11 8 0.5572 4.0301 -2.7320 12 7 -0.6775 5.8477 -2.4210 13 6 -1.1363 7.0177 -1.6579 14 6 -2.2225 7.7176 -2.5017 15 6 -2.7168 6.5854 -3.4403 16 8 -3.6821 5.7610 -2.7841 17 6 -3.2748 7.1506 -4.7211 18 1 -3.2881 8.2189 -4.8793 19 6 -3.7683 6.3039 -5.6909 20 7 -3.7515 5.0030 -5.4985 21 14 -4.4592 7.0044 -7.2788 22 1 -4.3633 8.4860 -7.2492 23 1 -3.6820 6.4804 -8.4305 24 1 -5.8823 6.6037 -7.4185 25 6 -1.4053 5.8038 -3.7022 26 6 2.4499 3.3820 -1.3112 27 6 1.6833 2.0416 -1.2067 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8899 33 1 0.7277 2.6306 1.0817 34 1 1.5044 1.3386 2.0306 35 1 2.8143 3.0935 2.7115 36 1 3.7087 2.6522 1.2375 37 1 3.4074 4.9913 1.0053 38 1 1.7614 4.9384 1.6683 39 1 -0.3030 7.6991 -1.4874 40 1 -1.5567 6.6970 -0.7048 41 1 -3.0337 8.0742 -1.8669 42 1 -1.7946 8.5393 -3.0761 43 1 -4.0204 5.0395 -3.3319 44 1 -4.0991 4.4073 -6.1806 45 1 -1.6267 4.7727 -3.9776 46 1 -0.8249 6.2889 -4.4870 47 1 2.3226 3.7957 -2.3116 48 1 3.5094 3.2089 -1.1225 49 1 0.6109 2.2357 -1.2262 50 1 1.9495 1.4057 -2.0510 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328424304.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:24 Heat of formation + Delta-G solvation = -86.072515 kcal Electronic energy + Delta-G solvation = -32053.531219 eV Core-core repulsion = 27888.722143 eV Total energy + Delta-G solvation = -4164.809075 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.87569 -39.18836 -38.16087 -37.27631 -35.61839 -34.24400 -32.91253 -32.19336 -30.83994 -30.24307 -28.00848 -27.64827 -26.54092 -25.64018 -23.98403 -23.32061 -22.33466 -20.66920 -20.15935 -19.65163 -18.71760 -17.32731 -16.98880 -16.84410 -16.12592 -15.85433 -15.57891 -15.36395 -15.14625 -14.75361 -14.61807 -14.37235 -14.11366 -13.67039 -13.47474 -13.13699 -12.98979 -12.98003 -12.79176 -12.45579 -12.31307 -12.06208 -12.03827 -11.81040 -11.64735 -11.54485 -11.30642 -11.22810 -11.10069 -10.93648 -10.82853 -10.75656 -10.67599 -10.53582 -10.46111 -10.20264 -9.42839 -8.94808 -8.75999 -8.70458 -8.41501 -8.20325 -7.87757 -6.34282 -4.43559 1.79666 2.60255 3.16702 3.25858 3.29412 3.56554 3.76673 3.85141 4.22375 4.54395 4.67776 4.84146 4.90347 4.93654 5.00848 5.11366 5.22329 5.27807 5.33916 5.43574 5.47920 5.51231 5.58103 5.69606 5.70729 5.78311 5.80083 5.83602 5.85165 5.99866 6.03458 6.04171 6.08081 6.19908 6.29425 6.48343 6.50008 6.71410 6.78546 6.82624 7.06675 7.14033 7.18398 7.28261 7.36895 7.69550 7.82023 7.95776 8.05764 8.45172 8.60809 9.26576 9.42154 10.73085 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016819 B = 0.003260 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.409144 B = 8585.968710 C = 9466.671726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.060 3.940 3 N -0.564 5.564 4 C 0.072 3.928 5 C -0.128 4.128 6 C 0.110 3.890 7 N -0.585 5.585 8 C 0.503 3.497 9 O -0.520 6.520 10 C 0.506 3.494 11 O -0.530 6.530 12 N -0.572 5.572 13 C 0.112 3.888 14 C -0.122 4.122 15 C 0.249 3.751 16 O -0.583 6.583 17 C -0.536 4.536 18 H 0.069 0.931 19 C 0.070 3.930 20 N -0.896 5.896 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.281 1.281 25 C 0.091 3.909 26 C 0.105 3.895 27 C 0.066 3.934 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.386 0.614 44 H 0.271 0.729 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.116 0.884 48 H 0.075 0.925 49 H 0.039 0.961 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.547 -6.238 11.271 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.067 4.067 3 N -0.288 5.288 4 C -0.056 4.056 5 C -0.167 4.167 6 C -0.011 4.011 7 N -0.319 5.319 8 C 0.286 3.714 9 O -0.396 6.396 10 C 0.288 3.712 11 O -0.409 6.409 12 N -0.304 5.304 13 C -0.011 4.011 14 C -0.160 4.160 15 C 0.208 3.792 16 O -0.393 6.393 17 C -0.574 4.574 18 H 0.087 0.913 19 C -0.132 4.132 20 N -0.535 5.535 21 Si 0.733 3.267 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.030 4.030 26 C -0.018 4.018 27 C -0.063 4.063 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.238 0.762 44 H 0.081 0.919 45 H 0.104 0.896 46 H 0.085 0.915 47 H 0.133 0.867 48 H 0.093 0.907 49 H 0.057 0.943 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.089 -6.048 11.729 18.587 hybrid contribution -1.297 -0.179 -1.352 1.882 sum 11.792 -6.227 10.377 16.897 Atomic orbital electron populations 1.22443 0.98114 1.02159 1.02420 1.22113 0.92925 0.89299 1.02382 1.58665 1.64502 1.03104 1.02515 1.21460 0.96733 0.96268 0.91134 1.21929 1.00401 0.94003 1.00382 1.22000 0.99419 0.97550 0.82153 1.47717 1.33628 1.37165 1.13365 1.20555 0.80659 0.81941 0.88253 1.90706 1.63085 1.32453 1.53315 1.19578 0.81542 0.83251 0.86779 1.90648 1.62864 1.31246 1.56166 1.48649 1.35986 1.24960 1.20798 1.22135 0.97112 0.86502 0.95360 1.22719 0.96830 0.98219 0.98226 1.19607 0.84084 0.85928 0.89546 1.86092 1.60476 1.47235 1.45495 1.21550 1.41243 0.94056 1.00577 0.91267 1.25090 0.94465 0.94812 0.98872 1.69571 1.46054 1.02223 1.35699 0.86318 0.78722 0.79387 0.82320 1.19517 1.20725 1.20714 1.23480 0.93876 1.03724 0.81885 1.22201 0.97367 0.88594 0.93669 1.21591 0.98810 0.95050 0.90862 0.92233 0.92861 0.92107 0.90821 0.91101 0.94140 0.91205 0.90340 0.90111 0.91540 0.89422 0.92011 0.91060 0.90535 0.90446 0.76234 0.91899 0.89598 0.91461 0.86676 0.90707 0.94325 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.05 9.46 37.16 0.35 -1.70 16 2 C 0.06 0.59 5.80 -3.83 -0.02 0.56 16 3 N -0.56 -6.25 4.00 -239.50 -0.96 -7.21 16 4 C 0.07 0.76 4.18 -5.08 -0.02 0.74 16 5 C -0.13 -1.16 5.79 -26.99 -0.16 -1.32 16 6 C 0.11 1.23 6.15 -2.82 -0.02 1.21 16 7 N -0.58 -8.19 2.17 -172.72 -0.38 -8.57 16 8 C 0.50 8.76 7.63 -11.59 -0.09 8.67 16 9 O -0.52 -9.73 13.51 5.50 0.07 -9.65 16 10 C 0.51 10.01 7.68 -11.58 -0.09 9.92 16 11 O -0.53 -10.77 11.98 5.50 0.07 -10.71 16 12 N -0.57 -12.05 3.33 -171.03 -0.57 -12.62 16 13 C 0.11 2.18 5.50 -3.06 -0.02 2.16 16 14 C -0.12 -2.50 6.12 -24.90 -0.15 -2.65 16 15 C 0.25 6.01 0.89 -89.62 -0.08 5.93 16 16 O -0.58 -15.01 13.18 -35.23 -0.46 -15.47 16 17 C -0.54 -13.71 8.25 -34.44 -0.28 -14.00 16 18 H 0.07 1.74 7.77 -52.48 -0.41 1.33 16 19 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 20 N -0.90 -23.36 10.72 55.43 0.59 -22.77 16 21 Si 0.91 19.97 29.54 -169.99 -5.02 14.95 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.09 2.13 5.63 -2.53 -0.01 2.12 16 26 C 0.10 1.37 5.06 -3.97 -0.02 1.35 16 27 C 0.07 0.87 4.11 -5.74 -0.02 0.85 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.59 7.32 -51.93 -0.38 0.21 16 30 H 0.06 0.78 6.81 -51.93 -0.35 0.43 16 31 H 0.07 0.68 7.92 -51.93 -0.41 0.27 16 32 H 0.07 0.59 7.93 -51.93 -0.41 0.18 16 33 H 0.04 0.54 7.33 -51.93 -0.38 0.16 16 34 H 0.07 0.64 7.53 -51.93 -0.39 0.25 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.72 7.98 -51.93 -0.41 0.31 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.07 7.06 -51.93 -0.37 0.70 16 39 H 0.06 1.11 7.83 -51.93 -0.41 0.70 16 40 H 0.07 1.43 7.45 -51.93 -0.39 1.04 16 41 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.08 1.47 8.02 -51.93 -0.42 1.05 16 43 H 0.39 10.20 6.93 45.56 0.32 10.52 16 44 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 45 H 0.09 2.22 7.64 -51.93 -0.40 1.83 16 46 H 0.07 1.58 8.03 -51.93 -0.42 1.17 16 47 H 0.12 1.73 5.42 -51.93 -0.28 1.45 16 48 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 49 H 0.04 0.63 6.02 -51.93 -0.31 0.32 16 50 H 0.08 1.04 7.85 -51.93 -0.41 0.64 16 LS Contribution 379.12 15.07 5.71 5.71 Total: -1.00 -27.81 379.12 -9.14 -36.95 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -7.47 Total: 13.83 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: -0.73 Total: 15.55 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -1.31 Total: -51.17 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.32 Total: -35.83 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.81 -9.14 -36.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328424304.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.120 kcal (2) G-P(sol) polarization free energy of solvation -27.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds