Wall clock time and date at job start Tue Mar 31 2020 23:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47505 * 2 1 4 4 C 1.46196 * 110.99842 * 64.98549 * 3 2 1 5 5 C 1.51276 * 109.10106 * 144.77422 * 4 3 2 6 6 C 1.54176 * 109.77596 * 92.31283 * 5 4 3 7 7 N 1.47615 * 111.09262 * 320.24101 * 6 5 4 8 8 C 1.34770 * 118.74810 * 138.19785 * 7 6 5 9 9 O 1.21349 * 119.99990 * 5.81811 * 8 7 6 10 10 C 1.49450 * 120.00023 * 185.81042 * 8 7 6 11 11 O 1.21351 * 120.00166 * 6.02358 * 10 8 7 12 12 N 1.34779 * 120.00150 * 186.01233 * 10 8 7 13 13 C 1.47028 * 125.64564 * 0.03502 * 12 10 8 14 14 C 1.54320 * 107.26833 * 181.01094 * 13 12 10 15 15 C 1.55157 * 102.94605 * 22.18771 * 14 13 12 16 16 O 1.42907 * 111.00140 * 82.57190 * 15 14 13 17 17 C 1.50702 * 111.00686 * 206.38558 * 15 14 13 18 18 H 1.08004 * 119.99652 * 0.02562 * 17 15 14 19 19 C 1.37876 * 120.00046 * 180.02562 * 17 15 14 20 20 N 1.31514 * 119.99801 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99925 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47277 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47238 * 120.00121 * 21 19 17 24 24 H 1.48499 * 109.46730 * 240.00226 * 21 19 17 25 25 C 1.47417 * 125.65079 * 179.97438 * 12 10 8 26 26 C 1.44884 * 122.50387 * 317.92527 * 7 6 5 27 27 C 1.41440 * 111.00077 * 293.95538 * 3 2 1 28 28 H 1.09003 * 109.46897 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47145 * 300.00262 * 1 2 3 30 30 H 1.08995 * 109.46967 * 60.00266 * 1 2 3 31 31 H 1.08997 * 109.47145 * 239.99738 * 2 1 3 32 32 H 1.09001 * 109.47415 * 120.00284 * 2 1 3 33 33 H 1.09001 * 109.53438 * 264.66563 * 4 3 2 34 34 H 1.08997 * 109.53251 * 24.89079 * 4 3 2 35 35 H 1.09004 * 109.44735 * 212.45684 * 5 4 3 36 36 H 1.09003 * 109.44557 * 332.39126 * 5 4 3 37 37 H 1.08997 * 109.30978 * 199.77771 * 6 5 4 38 38 H 1.08996 * 109.12533 * 80.58667 * 6 5 4 39 39 H 1.08992 * 109.88289 * 61.59142 * 13 12 10 40 40 H 1.09001 * 109.88035 * 300.42646 * 13 12 10 41 41 H 1.09000 * 110.71879 * 140.55685 * 14 13 12 42 42 H 1.09005 * 110.71890 * 263.64505 * 14 13 12 43 43 H 0.96698 * 113.99638 * 179.97438 * 16 15 14 44 44 H 0.97003 * 119.99758 * 179.97438 * 20 19 17 45 45 H 1.08999 * 110.36718 * 37.08116 * 25 12 10 46 46 H 1.09002 * 110.46236 * 274.80530 * 25 12 10 47 47 H 1.09004 * 109.43852 * 210.06919 * 26 7 6 48 48 H 1.09000 * 109.44063 * 329.97935 * 26 7 6 49 49 H 1.09002 * 109.38852 * 71.52459 * 27 3 2 50 50 H 1.09000 * 109.38577 * 311.84481 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6503 2.0713 1.2368 5 6 2.7599 3.0234 1.6251 6 6 2.4800 4.4195 1.0339 7 7 1.9326 4.3175 -0.3332 8 6 0.9165 5.1292 -0.6868 9 8 0.5388 5.9954 0.0745 10 6 0.2550 4.9625 -2.0165 11 8 0.5572 4.0301 -2.7320 12 7 -0.6775 5.8477 -2.4210 13 6 -1.1363 7.0177 -1.6579 14 6 -2.2225 7.7176 -2.5017 15 6 -2.7168 6.5854 -3.4403 16 8 -3.6821 5.7610 -2.7841 17 6 -3.2748 7.1506 -4.7211 18 1 -3.2881 8.2189 -4.8793 19 6 -3.7683 6.3039 -5.6909 20 7 -3.7515 5.0030 -5.4985 21 14 -4.4592 7.0044 -7.2788 22 1 -4.3633 8.4860 -7.2492 23 1 -3.6820 6.4804 -8.4305 24 1 -5.8823 6.6037 -7.4185 25 6 -1.4053 5.8038 -3.7022 26 6 2.4499 3.3820 -1.3112 27 6 1.6833 2.0416 -1.2067 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8899 33 1 0.7277 2.6306 1.0817 34 1 1.5044 1.3386 2.0306 35 1 2.8143 3.0935 2.7115 36 1 3.7087 2.6522 1.2375 37 1 3.4074 4.9913 1.0053 38 1 1.7614 4.9384 1.6683 39 1 -0.3030 7.6991 -1.4874 40 1 -1.5567 6.6970 -0.7048 41 1 -3.0337 8.0742 -1.8669 42 1 -1.7946 8.5393 -3.0761 43 1 -4.0204 5.0395 -3.3319 44 1 -4.0991 4.4073 -6.1806 45 1 -1.6267 4.7727 -3.9776 46 1 -0.8249 6.2889 -4.4870 47 1 2.3226 3.7957 -2.3116 48 1 3.5094 3.2089 -1.1225 49 1 0.6109 2.2357 -1.2262 50 1 1.9495 1.4057 -2.0510 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328424304.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:23 Heat of formation + Delta-G solvation = -105.552412 kcal Electronic energy + Delta-G solvation = -32054.375931 eV Core-core repulsion = 27888.722143 eV Total energy + Delta-G solvation = -4165.653787 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.22311 -40.53922 -39.47393 -38.93792 -36.85889 -35.95170 -34.18865 -33.86703 -31.97981 -31.79503 -29.78271 -28.78928 -27.74266 -27.14978 -25.47962 -24.34043 -23.74970 -21.94127 -21.49517 -21.02295 -20.09951 -19.22856 -18.40356 -18.18604 -17.44277 -17.25179 -17.06671 -16.60477 -16.49205 -16.29273 -15.94598 -15.86798 -15.12397 -14.96776 -14.87340 -14.72246 -14.54147 -14.27184 -14.05471 -13.82803 -13.57117 -13.52098 -13.36227 -13.06600 -12.94642 -12.88867 -12.79645 -12.62413 -12.42391 -12.30035 -12.17158 -12.15044 -12.07226 -12.01827 -11.71789 -11.59999 -11.26841 -10.70442 -10.50327 -10.24709 -9.93154 -9.56479 -9.17553 -8.28592 -6.45443 0.32119 1.24231 1.41771 1.45144 1.55940 2.07035 2.32673 2.40937 2.95384 2.97425 3.12475 3.74990 3.79407 3.94729 4.04973 4.05803 4.09116 4.13246 4.20536 4.25260 4.28754 4.34689 4.47294 4.53060 4.59092 4.63287 4.66932 4.69782 4.82783 4.85480 4.91091 4.92057 4.96768 5.01832 5.03406 5.09386 5.17158 5.24867 5.26307 5.31471 5.39858 5.42518 5.72925 5.90710 6.00140 6.18041 6.30986 6.37325 6.57174 6.64903 6.90793 7.27016 7.35965 8.77735 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016819 B = 0.003260 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.409144 B = 8585.968710 C = 9466.671726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.060 3.940 3 N -0.557 5.557 4 C 0.069 3.931 5 C -0.117 4.117 6 C 0.105 3.895 7 N -0.571 5.571 8 C 0.504 3.496 9 O -0.536 6.536 10 C 0.498 3.502 11 O -0.540 6.540 12 N -0.584 5.584 13 C 0.121 3.879 14 C -0.115 4.115 15 C 0.233 3.767 16 O -0.592 6.592 17 C -0.555 4.555 18 H 0.072 0.928 19 C 0.028 3.972 20 N -0.918 5.918 21 Si 0.968 3.032 22 H -0.264 1.264 23 H -0.280 1.280 24 H -0.281 1.281 25 C 0.107 3.893 26 C 0.106 3.894 27 C 0.077 3.923 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.028 0.972 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.007 0.993 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.378 0.622 44 H 0.272 0.728 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.094 0.906 48 H 0.106 0.894 49 H -0.001 1.001 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.531 -6.296 12.590 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.067 4.067 3 N -0.281 5.281 4 C -0.058 4.058 5 C -0.155 4.155 6 C -0.015 4.015 7 N -0.304 5.304 8 C 0.286 3.714 9 O -0.414 6.414 10 C 0.281 3.719 11 O -0.420 6.420 12 N -0.316 5.316 13 C -0.001 4.001 14 C -0.153 4.153 15 C 0.192 3.808 16 O -0.401 6.401 17 C -0.593 4.593 18 H 0.090 0.910 19 C -0.173 4.173 20 N -0.558 5.558 21 Si 0.793 3.207 22 H -0.188 1.188 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.015 4.015 26 C -0.017 4.017 27 C -0.053 4.053 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.026 0.974 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.229 0.771 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.112 0.888 48 H 0.124 0.876 49 H 0.017 0.983 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 15.113 -6.121 13.082 20.905 hybrid contribution -1.878 -0.267 -1.729 2.567 sum 13.236 -6.388 11.353 18.571 Atomic orbital electron populations 1.22400 0.99203 1.02535 1.00540 1.22221 0.91882 0.88706 1.03878 1.58773 1.63902 1.03582 1.01858 1.21558 0.96011 0.96874 0.91368 1.21916 0.99879 0.91772 1.01979 1.22309 0.99779 0.99469 0.79949 1.47843 1.32007 1.35800 1.14724 1.20069 0.81560 0.82778 0.86973 1.90692 1.63976 1.33464 1.53251 1.20208 0.81175 0.82641 0.87830 1.90646 1.63036 1.31456 1.56880 1.48685 1.36564 1.26058 1.20262 1.22106 0.97440 0.86146 0.94449 1.22726 0.97245 0.97485 0.97848 1.19864 0.83784 0.86804 0.90318 1.86084 1.61086 1.47219 1.45729 1.21828 1.41732 0.94301 1.01405 0.91012 1.25826 0.94700 0.95052 1.01719 1.69676 1.46447 1.03178 1.36495 0.85355 0.77803 0.78951 0.78622 1.18799 1.20590 1.20642 1.23035 0.94105 1.01338 0.82990 1.22190 0.98898 0.88054 0.92534 1.21408 0.96308 0.95381 0.92244 0.90696 0.93457 0.95240 0.90232 0.88647 0.97429 0.89196 0.87500 0.88975 0.89270 0.90491 0.89970 0.91755 0.89874 0.88771 0.77122 0.91871 0.92995 0.92188 0.88823 0.87622 0.98338 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.98 9.46 71.98 0.68 -3.30 16 2 C 0.06 1.06 5.80 86.30 0.50 1.56 16 3 N -0.56 -11.42 4.00 -911.64 -3.65 -15.07 16 4 C 0.07 1.33 4.18 85.87 0.36 1.69 16 5 C -0.12 -1.71 5.79 30.43 0.18 -1.53 16 6 C 0.11 2.09 6.15 86.56 0.53 2.62 16 7 N -0.57 -15.47 2.17 -818.74 -1.78 -17.25 16 8 C 0.50 17.62 7.63 87.27 0.67 18.28 16 9 O -0.54 -19.92 13.51 -3.24 -0.04 -19.96 16 10 C 0.50 20.32 7.68 87.27 0.67 20.99 16 11 O -0.54 -23.01 11.98 -3.25 -0.04 -23.05 16 12 N -0.58 -25.25 3.33 -813.39 -2.71 -27.96 16 13 C 0.12 4.71 5.50 86.73 0.48 5.19 16 14 C -0.12 -4.69 6.12 31.78 0.19 -4.49 16 15 C 0.23 11.47 0.89 -10.15 -0.01 11.46 16 16 O -0.59 -31.52 13.18 -148.98 -1.96 -33.48 16 17 C -0.55 -28.69 8.25 25.60 0.21 -28.48 16 18 H 0.07 3.59 7.77 -2.91 -0.02 3.57 16 19 C 0.03 1.42 5.30 84.65 0.45 1.87 16 20 N -0.92 -49.24 10.72 21.45 0.23 -49.01 16 21 Si 0.97 41.15 29.54 68.60 2.03 43.18 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 25 C 0.11 5.23 5.63 86.86 0.49 5.72 16 26 C 0.11 2.69 5.06 87.29 0.44 3.13 16 27 C 0.08 2.01 4.11 87.90 0.36 2.37 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.05 1.04 7.32 -2.39 -0.02 1.02 16 30 H 0.03 0.79 6.81 -2.39 -0.02 0.78 16 31 H 0.08 1.33 7.92 -2.39 -0.02 1.31 16 32 H 0.10 1.27 7.93 -2.39 -0.02 1.25 16 33 H 0.01 0.19 7.33 -2.39 -0.02 0.18 16 34 H 0.09 1.38 7.53 -2.39 -0.02 1.37 16 35 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.22 7.98 -2.39 -0.02 1.20 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 1.75 7.06 -2.39 -0.02 1.73 16 39 H 0.08 2.87 7.83 -2.39 -0.02 2.85 16 40 H 0.06 2.60 7.45 -2.39 -0.02 2.58 16 41 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 42 H 0.09 3.48 8.02 -2.38 -0.02 3.46 16 43 H 0.38 20.95 6.93 -74.06 -0.51 20.44 16 44 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 45 H 0.05 2.85 7.64 -2.39 -0.02 2.83 16 46 H 0.06 2.94 8.03 -2.39 -0.02 2.92 16 47 H 0.09 2.83 5.42 -2.39 -0.01 2.82 16 48 H 0.11 2.07 8.11 -2.39 -0.02 2.05 16 49 H 0.00 -0.05 6.02 -2.39 -0.01 -0.07 16 50 H 0.09 2.16 7.85 -2.39 -0.02 2.14 16 Total: -1.00 -62.09 379.12 -1.29 -63.38 By element: Atomic # 1 Polarization: 41.71 SS G_CDS: 0.44 Total: 42.14 kcal Atomic # 6 Polarization: 30.89 SS G_CDS: 6.20 Total: 37.09 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -7.90 Total: -109.30 kcal Atomic # 8 Polarization: -74.45 SS G_CDS: -2.05 Total: -76.50 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -62.09 -1.29 -63.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328424304.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.170 kcal (2) G-P(sol) polarization free energy of solvation -62.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds