Wall clock time and date at job start Tue Mar 31 2020 23:58:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 N 1.46499 * 109.47141 * 2 1
4 4 C 1.46498 * 119.99960 * 269.99953 * 3 2 1
5 5 C 1.53002 * 109.46986 * 90.00305 * 4 3 2
6 6 C 1.34771 * 119.99925 * 89.99974 * 3 2 1
7 7 O 1.21282 * 120.00380 * 0.02562 * 6 3 2
8 8 C 1.50706 * 119.99916 * 179.97438 * 6 3 2
9 9 N 1.46503 * 109.46870 * 180.02562 * 8 6 3
10 10 C 1.34779 * 119.99706 * 180.02562 * 9 8 6
11 11 O 1.21345 * 120.00051 * 359.97438 * 10 9 8
12 12 C 1.49452 * 119.99677 * 179.97438 * 10 9 8
13 13 O 1.21344 * 120.00297 * 6.40021 * 12 10 9
14 14 N 1.34779 * 119.99798 * 186.39947 * 12 10 9
15 15 C 1.46927 * 120.63094 * 7.08465 * 14 12 10
16 16 C 1.53199 * 108.77550 * 233.59003 * 15 14 12
17 17 C 1.53040 * 109.30993 * 305.36302 * 16 15 14
18 18 C 1.53039 * 109.53912 * 61.36230 * 17 16 15
19 19 H 1.09001 * 109.49443 * 58.58960 * 18 17 16
20 20 C 1.50704 * 109.50030 * 178.68094 * 18 17 16
21 21 H 1.08004 * 119.99206 * 0.02562 * 20 18 17
22 22 C 1.37868 * 120.00092 * 180.02562 * 20 18 17
23 23 N 1.31513 * 120.00321 * 0.02562 * 22 20 18
24 24 Si 1.86804 * 119.99927 * 180.02562 * 22 20 18
25 25 H 1.48496 * 109.47242 * 60.00040 * 24 22 20
26 26 H 1.48504 * 109.47068 * 180.02562 * 24 22 20
27 27 H 1.48500 * 109.47063 * 299.99872 * 24 22 20
28 28 C 1.46929 * 120.62964 * 186.80697 * 14 12 10
29 29 H 1.09002 * 109.47347 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.46676 * 300.00120 * 1 2 3
31 31 H 1.09003 * 109.47147 * 59.99821 * 1 2 3
32 32 H 1.09000 * 109.46676 * 239.99880 * 2 1 3
33 33 H 1.08994 * 109.46955 * 120.00032 * 2 1 3
34 34 H 1.09000 * 109.47281 * 209.99682 * 4 3 2
35 35 H 1.09002 * 109.47292 * 330.00196 * 4 3 2
36 36 H 1.09002 * 109.47194 * 59.99830 * 5 4 3
37 37 H 1.09001 * 109.47130 * 179.97438 * 5 4 3
38 38 H 1.09001 * 109.47108 * 299.99664 * 5 4 3
39 39 H 1.08993 * 109.47131 * 299.99789 * 8 6 3
40 40 H 1.08995 * 109.46898 * 60.00188 * 8 6 3
41 41 H 0.97002 * 120.00436 * 359.97438 * 9 8 6
42 42 H 1.09000 * 109.58873 * 353.37318 * 15 14 12
43 43 H 1.08993 * 109.58838 * 113.65961 * 15 14 12
44 44 H 1.08995 * 109.49822 * 65.31676 * 16 15 14
45 45 H 1.08995 * 109.49341 * 185.41306 * 16 15 14
46 46 H 1.08999 * 109.46284 * 181.39154 * 17 16 15
47 47 H 1.09000 * 109.45943 * 301.36004 * 17 16 15
48 48 H 0.96999 * 120.00564 * 179.97438 * 23 22 20
49 49 H 1.09002 * 109.58220 * 246.20015 * 28 14 12
50 50 H 1.08990 * 109.58418 * 6.62397 * 28 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2626 2.0718 -1.2687
5 6 0.9875 2.7931 -1.7103
6 6 2.2430 2.0165 1.1672
7 8 2.0413 1.4447 2.2175
8 6 2.7459 3.4372 1.1672
9 7 2.9091 3.8974 2.5484
10 6 3.3509 5.1467 2.7947
11 8 3.6138 5.8901 1.8724
12 6 3.5168 5.6163 4.2038
13 8 3.3664 4.8397 5.1239
14 7 3.8336 6.9025 4.4525
15 6 3.8674 7.8891 3.3642
16 6 5.2292 8.5908 3.3769
17 6 5.4824 9.1792 4.7668
18 6 5.5098 8.0527 5.8023
19 1 6.2898 7.3375 5.5412
20 6 5.7913 8.6295 7.1658
21 1 5.9359 9.6934 7.2826
22 6 5.8643 7.7991 8.2639
23 7 5.6887 6.5035 8.1215
24 14 6.2126 8.5142 9.9542
25 1 5.1476 9.4861 10.3095
26 1 6.2404 7.4204 10.9583
27 1 7.5274 9.2043 9.9383
28 6 4.1459 7.3460 5.8180
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5138 0.8899
34 1 3.0644 2.7985 -1.1384
35 1 2.5506 1.3451 -2.0284
36 1 0.6995 3.5198 -0.9507
37 1 1.1693 3.3073 -2.6541
38 1 0.1856 2.0664 -1.8407
39 1 3.7062 3.4826 0.6536
40 1 2.0283 4.0766 0.6532
41 1 2.6986 3.3032 3.2857
42 1 3.7255 7.3842 2.4087
43 1 3.0747 8.6226 3.5112
44 1 6.0118 7.8705 3.1386
45 1 5.2330 9.3909 2.6368
46 1 6.4397 9.7003 4.7716
47 1 4.6859 9.8807 5.0147
48 1 5.7404 5.9192 8.8941
49 1 3.3769 8.0375 6.1623
50 1 4.1876 6.4827 6.4819
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001330512795.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:58:02
Heat of formation + Delta-G solvation = -89.953797 kcal
Electronic energy + Delta-G solvation = -30362.783348 eV
Core-core repulsion = 26197.805968 eV
Total energy + Delta-G solvation = -4164.977380 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-40.85603 -40.13886 -38.23401 -36.87867 -36.70066 -34.80927 -33.19678 -32.45239
-31.69880 -30.40444 -29.70770 -28.43376 -25.68335 -24.95648 -23.88070 -23.57087
-22.22747 -21.76764 -20.39558 -19.65860 -18.80976 -17.74914 -17.23582 -16.61493
-16.40381 -16.31301 -15.97111 -15.41439 -15.18018 -14.79287 -14.54190 -14.44197
-14.20487 -13.98904 -13.77076 -13.63295 -13.54623 -13.21160 -12.96377 -12.85242
-12.70204 -12.56450 -12.50848 -12.06059 -12.02701 -11.82448 -11.75206 -11.39273
-11.17208 -10.94615 -10.69957 -10.45697 -10.29002 -10.23577 -10.03146 -9.86292
-9.39805 -9.21385 -9.19949 -9.09162 -8.53173 -8.40080 -7.79877 -5.99323
-4.07735 1.76556 2.16069 2.26335 2.83331 3.33516 3.39257 3.40668
3.64423 3.94856 3.97726 4.36229 4.43980 4.61468 4.66284 4.71554
4.81343 4.87306 4.95694 4.98798 5.02976 5.21796 5.27324 5.31058
5.33718 5.53359 5.63326 5.69384 5.71074 5.83442 5.85835 6.03029
6.07960 6.26726 6.40912 6.58930 6.62629 6.75271 6.85939 6.88677
7.01391 7.06522 7.19426 7.24780 7.61028 7.68011 7.84625 7.96879
7.97993 8.17700 8.37463 8.59907 8.96061 9.57752 11.06363
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.020787 B = 0.002368 C = 0.002173
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1346.658391 B =11823.151824 C =12881.562411
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.111 3.889
3 N -0.611 5.611
4 C 0.099 3.901
5 C -0.176 4.176
6 C 0.510 3.490
7 O -0.525 6.525
8 C 0.099 3.901
9 N -0.694 5.694
10 C 0.516 3.484
11 O -0.516 6.516
12 C 0.496 3.504
13 O -0.519 6.519
14 N -0.567 5.567
15 C 0.050 3.950
16 C -0.127 4.127
17 C -0.113 4.113
18 C 0.041 3.959
19 H 0.030 0.970
20 C -0.520 4.520
21 H 0.059 0.941
22 C 0.062 3.938
23 N -0.882 5.882
24 Si 0.894 3.106
25 H -0.277 1.277
26 H -0.287 1.287
27 H -0.277 1.277
28 C 0.109 3.891
29 H 0.066 0.934
30 H 0.060 0.940
31 H 0.058 0.942
32 H 0.078 0.922
33 H 0.085 0.915
34 H 0.084 0.916
35 H 0.084 0.916
36 H 0.060 0.940
37 H 0.071 0.929
38 H 0.062 0.938
39 H 0.103 0.897
40 H 0.103 0.897
41 H 0.424 0.576
42 H 0.143 0.857
43 H 0.054 0.946
44 H 0.058 0.942
45 H 0.058 0.942
46 H 0.050 0.950
47 H 0.049 0.951
48 H 0.265 0.735
49 H 0.049 0.951
50 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.300 -9.619 -23.083 26.680
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.011 4.011
3 N -0.345 5.345
4 C -0.024 4.024
5 C -0.235 4.235
6 C 0.297 3.703
7 O -0.401 6.401
8 C -0.028 4.028
9 N -0.351 5.351
10 C 0.299 3.701
11 O -0.394 6.394
12 C 0.277 3.723
13 O -0.395 6.395
14 N -0.299 5.299
15 C -0.072 4.072
16 C -0.165 4.165
17 C -0.151 4.151
18 C 0.022 3.978
19 H 0.048 0.952
20 C -0.559 4.559
21 H 0.077 0.923
22 C -0.141 4.141
23 N -0.520 5.520
24 Si 0.722 3.278
25 H -0.202 1.202
26 H -0.213 1.213
27 H -0.203 1.203
28 C -0.011 4.011
29 H 0.085 0.915
30 H 0.079 0.921
31 H 0.077 0.923
32 H 0.096 0.904
33 H 0.104 0.896
34 H 0.102 0.898
35 H 0.102 0.898
36 H 0.079 0.921
37 H 0.089 0.911
38 H 0.081 0.919
39 H 0.121 0.879
40 H 0.121 0.879
41 H 0.265 0.735
42 H 0.159 0.841
43 H 0.073 0.927
44 H 0.077 0.923
45 H 0.077 0.923
46 H 0.069 0.931
47 H 0.067 0.933
48 H 0.075 0.925
49 H 0.067 0.933
50 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -9.302 -10.003 -22.542 26.358
hybrid contribution 0.080 0.206 1.141 1.162
sum -9.222 -9.798 -21.401 25.279
Atomic orbital electron populations
1.22208 0.95723 1.02364 1.02525 1.21477 0.94614 0.81632 1.03370
1.47964 1.66235 1.14488 1.05840 1.21715 0.98257 0.97216 0.85165
1.22314 0.98060 1.01017 1.02066 1.20537 0.77616 0.88353 0.83787
1.90755 1.51332 1.67220 1.30760 1.21208 1.03504 0.92590 0.85540
1.45587 1.66022 1.14941 1.08557 1.20823 0.76693 0.81584 0.90955
1.90296 1.50081 1.52391 1.46621 1.19627 0.80740 0.84073 0.87909
1.90784 1.49891 1.53855 1.45020 1.48436 1.63343 1.06425 1.11707
1.23069 0.97510 0.92473 0.94102 1.21853 0.96950 0.99285 0.98439
1.21667 1.00255 0.99245 0.93934 1.19045 0.92537 0.92629 0.93569
0.95223 1.21053 1.49350 0.93803 0.91655 0.92308 1.25061 0.94897
0.94854 0.99252 1.69863 1.48687 1.02738 1.30689 0.86629 0.78830
0.78611 0.83765 1.20227 1.21253 1.20281 1.22587 0.97756 1.02022
0.78749 0.91549 0.92079 0.92340 0.90363 0.89620 0.89759 0.89766
0.92139 0.91057 0.91905 0.87898 0.87911 0.73530 0.84064 0.92725
0.92332 0.92305 0.93092 0.93251 0.92536 0.93314 0.85953
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.06 10.24 37.16 0.38 -0.68 16
2 C 0.11 0.73 6.17 -4.04 -0.02 0.71 16
3 N -0.61 -4.49 2.47 -173.69 -0.43 -4.92 16
4 C 0.10 0.43 5.98 -4.04 -0.02 0.41 16
5 C -0.18 -0.73 10.24 37.16 0.38 -0.35 16
6 C 0.51 5.42 7.74 -10.99 -0.09 5.34 16
7 O -0.53 -7.61 15.25 5.56 0.08 -7.53 16
8 C 0.10 1.01 4.71 -5.19 -0.02 0.98 16
9 N -0.69 -9.91 5.52 -61.91 -0.34 -10.25 16
10 C 0.52 8.68 7.78 -11.58 -0.09 8.59 16
11 O -0.52 -8.50 13.10 5.50 0.07 -8.42 16
12 C 0.50 10.35 7.74 -11.58 -0.09 10.26 16
13 O -0.52 -12.39 15.94 5.50 0.09 -12.30 16
14 N -0.57 -12.05 2.97 -173.01 -0.51 -12.56 16
15 C 0.05 0.90 6.27 -3.71 -0.02 0.87 16
16 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16
17 C -0.11 -2.35 5.10 -26.69 -0.14 -2.49 16
18 C 0.04 1.04 2.26 -91.43 -0.21 0.84 16
19 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16
20 C -0.52 -14.23 8.56 -34.44 -0.29 -14.52 16
21 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16
22 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16
23 N -0.88 -25.83 11.41 55.43 0.63 -25.20 16
24 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16
25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
27 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16
28 C 0.11 2.68 5.41 -3.49 -0.02 2.67 16
29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16
30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
31 H 0.06 0.31 6.26 -51.93 -0.33 -0.02 16
32 H 0.08 0.33 7.89 -51.93 -0.41 -0.08 16
33 H 0.09 0.72 7.42 -51.93 -0.39 0.33 16
34 H 0.08 0.32 6.44 -51.93 -0.33 -0.01 16
35 H 0.08 0.23 7.89 -51.93 -0.41 -0.18 16
36 H 0.06 0.32 7.22 -51.93 -0.38 -0.06 16
37 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16
38 H 0.06 0.27 6.26 -51.93 -0.33 -0.06 16
39 H 0.10 0.91 7.40 -51.93 -0.38 0.52 16
40 H 0.10 0.88 7.19 -51.93 -0.37 0.51 16
41 H 0.42 6.64 6.93 -40.82 -0.28 6.35 16
42 H 0.14 2.41 3.78 -56.75 -0.21 2.19 16
43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16
44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16
47 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16
48 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
49 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16
50 H 0.12 3.47 5.20 -51.93 -0.27 3.20 16
LS Contribution 394.45 15.07 5.94 5.94
Total: -1.00 -33.13 394.45 -7.86 -40.99
By element:
Atomic # 1 Polarization: 13.88 SS G_CDS: -7.86 Total: 6.02 kcal
Atomic # 6 Polarization: 12.35 SS G_CDS: -0.51 Total: 11.84 kcal
Atomic # 7 Polarization: -52.29 SS G_CDS: -0.65 Total: -52.94 kcal
Atomic # 8 Polarization: -28.49 SS G_CDS: 0.24 Total: -28.25 kcal
Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -33.13 -7.86 -40.99 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001330512795.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.965 kcal
(2) G-P(sol) polarization free energy of solvation -33.132 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.098 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.954 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds