Wall clock time and date at job start Tue Mar 31 2020 23:58:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 N 1.46499 * 109.47141 * 2 1
4 4 C 1.46498 * 119.99960 * 269.99953 * 3 2 1
5 5 C 1.53002 * 109.46986 * 90.00305 * 4 3 2
6 6 C 1.34771 * 119.99925 * 89.99974 * 3 2 1
7 7 O 1.21282 * 120.00380 * 0.02562 * 6 3 2
8 8 C 1.50706 * 119.99916 * 179.97438 * 6 3 2
9 9 N 1.46503 * 109.46870 * 180.02562 * 8 6 3
10 10 C 1.34779 * 119.99706 * 180.02562 * 9 8 6
11 11 O 1.21345 * 120.00051 * 359.97438 * 10 9 8
12 12 C 1.49452 * 119.99677 * 179.97438 * 10 9 8
13 13 O 1.21344 * 120.00297 * 6.40021 * 12 10 9
14 14 N 1.34779 * 119.99798 * 186.39947 * 12 10 9
15 15 C 1.46927 * 120.63094 * 7.08465 * 14 12 10
16 16 C 1.53199 * 108.77550 * 233.59003 * 15 14 12
17 17 C 1.53040 * 109.30993 * 305.36302 * 16 15 14
18 18 C 1.53039 * 109.53912 * 61.36230 * 17 16 15
19 19 H 1.09001 * 109.49443 * 58.58960 * 18 17 16
20 20 C 1.50704 * 109.50030 * 178.68094 * 18 17 16
21 21 H 1.08004 * 119.99206 * 0.02562 * 20 18 17
22 22 C 1.37868 * 120.00092 * 180.02562 * 20 18 17
23 23 N 1.31513 * 120.00321 * 0.02562 * 22 20 18
24 24 Si 1.86804 * 119.99927 * 180.02562 * 22 20 18
25 25 H 1.48496 * 109.47242 * 60.00040 * 24 22 20
26 26 H 1.48504 * 109.47068 * 180.02562 * 24 22 20
27 27 H 1.48500 * 109.47063 * 299.99872 * 24 22 20
28 28 C 1.46929 * 120.62964 * 186.80697 * 14 12 10
29 29 H 1.09002 * 109.47347 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.46676 * 300.00120 * 1 2 3
31 31 H 1.09003 * 109.47147 * 59.99821 * 1 2 3
32 32 H 1.09000 * 109.46676 * 239.99880 * 2 1 3
33 33 H 1.08994 * 109.46955 * 120.00032 * 2 1 3
34 34 H 1.09000 * 109.47281 * 209.99682 * 4 3 2
35 35 H 1.09002 * 109.47292 * 330.00196 * 4 3 2
36 36 H 1.09002 * 109.47194 * 59.99830 * 5 4 3
37 37 H 1.09001 * 109.47130 * 179.97438 * 5 4 3
38 38 H 1.09001 * 109.47108 * 299.99664 * 5 4 3
39 39 H 1.08993 * 109.47131 * 299.99789 * 8 6 3
40 40 H 1.08995 * 109.46898 * 60.00188 * 8 6 3
41 41 H 0.97002 * 120.00436 * 359.97438 * 9 8 6
42 42 H 1.09000 * 109.58873 * 353.37318 * 15 14 12
43 43 H 1.08993 * 109.58838 * 113.65961 * 15 14 12
44 44 H 1.08995 * 109.49822 * 65.31676 * 16 15 14
45 45 H 1.08995 * 109.49341 * 185.41306 * 16 15 14
46 46 H 1.08999 * 109.46284 * 181.39154 * 17 16 15
47 47 H 1.09000 * 109.45943 * 301.36004 * 17 16 15
48 48 H 0.96999 * 120.00564 * 179.97438 * 23 22 20
49 49 H 1.09002 * 109.58220 * 246.20015 * 28 14 12
50 50 H 1.08990 * 109.58418 * 6.62397 * 28 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2626 2.0718 -1.2687
5 6 0.9875 2.7931 -1.7103
6 6 2.2430 2.0165 1.1672
7 8 2.0413 1.4447 2.2175
8 6 2.7459 3.4372 1.1672
9 7 2.9091 3.8974 2.5484
10 6 3.3509 5.1467 2.7947
11 8 3.6138 5.8901 1.8724
12 6 3.5168 5.6163 4.2038
13 8 3.3664 4.8397 5.1239
14 7 3.8336 6.9025 4.4525
15 6 3.8674 7.8891 3.3642
16 6 5.2292 8.5908 3.3769
17 6 5.4824 9.1792 4.7668
18 6 5.5098 8.0527 5.8023
19 1 6.2898 7.3375 5.5412
20 6 5.7913 8.6295 7.1658
21 1 5.9359 9.6934 7.2826
22 6 5.8643 7.7991 8.2639
23 7 5.6887 6.5035 8.1215
24 14 6.2126 8.5142 9.9542
25 1 5.1476 9.4861 10.3095
26 1 6.2404 7.4204 10.9583
27 1 7.5274 9.2043 9.9383
28 6 4.1459 7.3460 5.8180
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5138 0.8899
34 1 3.0644 2.7985 -1.1384
35 1 2.5506 1.3451 -2.0284
36 1 0.6995 3.5198 -0.9507
37 1 1.1693 3.3073 -2.6541
38 1 0.1856 2.0664 -1.8407
39 1 3.7062 3.4826 0.6536
40 1 2.0283 4.0766 0.6532
41 1 2.6986 3.3032 3.2857
42 1 3.7255 7.3842 2.4087
43 1 3.0747 8.6226 3.5112
44 1 6.0118 7.8705 3.1386
45 1 5.2330 9.3909 2.6368
46 1 6.4397 9.7003 4.7716
47 1 4.6859 9.8807 5.0147
48 1 5.7404 5.9192 8.8941
49 1 3.3769 8.0375 6.1623
50 1 4.1876 6.4827 6.4819
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001330512795.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:58:01
Heat of formation + Delta-G solvation = -113.208967 kcal
Electronic energy + Delta-G solvation = -30363.791768 eV
Core-core repulsion = 26197.805968 eV
Total energy + Delta-G solvation = -4165.985800 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-42.09846 -41.18380 -39.71813 -38.54233 -37.46036 -36.03837 -35.09013 -33.45980
-32.97018 -31.55300 -30.98203 -29.39176 -27.42216 -26.72153 -24.69982 -24.12012
-23.58562 -23.37115 -21.74899 -20.82061 -20.10723 -19.05471 -18.44512 -18.10748
-17.70865 -17.43267 -17.19927 -16.69028 -16.51341 -16.46582 -15.84004 -15.54490
-15.38177 -14.90618 -14.87330 -14.68368 -14.61037 -14.43956 -14.37097 -14.16951
-13.87237 -13.59181 -13.44440 -13.30810 -13.07019 -13.04645 -12.85244 -12.52478
-12.45854 -12.29105 -12.25146 -12.17622 -11.70757 -11.64768 -11.61619 -11.17371
-11.07217 -10.97374 -10.55740 -10.52379 -10.04179 -9.83568 -9.55280 -8.12200
-6.28966 0.29068 1.16046 1.36416 1.41734 1.43486 1.51560 1.91702
2.10426 2.41192 2.55339 3.15591 3.22990 3.29322 3.98454 4.13392
4.14359 4.16733 4.21293 4.22278 4.25124 4.35041 4.46632 4.49651
4.57751 4.59992 4.66668 4.75040 4.80050 4.83046 4.85147 5.00013
5.06912 5.07775 5.14457 5.25282 5.26347 5.27072 5.37985 5.46398
5.50182 5.53932 5.57216 5.82759 5.88628 5.94152 6.19347 6.28802
6.41471 6.65116 6.82397 6.93859 6.95562 7.41068 8.91696
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.020787 B = 0.002368 C = 0.002173
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1346.658391 B =11823.151824 C =12881.562411
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.107 3.893
3 N -0.600 5.600
4 C 0.092 3.908
5 C -0.174 4.174
6 C 0.506 3.494
7 O -0.575 6.575
8 C 0.097 3.903
9 N -0.686 5.686
10 C 0.530 3.470
11 O -0.509 6.509
12 C 0.484 3.516
13 O -0.561 6.561
14 N -0.573 5.573
15 C 0.049 3.951
16 C -0.120 4.120
17 C -0.107 4.107
18 C 0.039 3.961
19 H -0.011 1.011
20 C -0.535 4.535
21 H 0.064 0.936
22 C 0.010 3.990
23 N -0.917 5.917
24 Si 0.960 3.040
25 H -0.267 1.267
26 H -0.289 1.289
27 H -0.268 1.268
28 C 0.120 3.880
29 H 0.078 0.922
30 H 0.031 0.969
31 H 0.072 0.928
32 H 0.111 0.889
33 H 0.061 0.939
34 H 0.094 0.906
35 H 0.109 0.891
36 H 0.047 0.953
37 H 0.087 0.913
38 H 0.061 0.939
39 H 0.126 0.874
40 H 0.127 0.873
41 H 0.418 0.582
42 H 0.159 0.841
43 H 0.072 0.928
44 H 0.047 0.953
45 H 0.101 0.899
46 H 0.054 0.946
47 H 0.057 0.943
48 H 0.261 0.739
49 H 0.045 0.955
50 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.580 -8.537 -26.284 29.249
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C -0.015 4.015
3 N -0.333 5.333
4 C -0.029 4.029
5 C -0.232 4.232
6 C 0.294 3.706
7 O -0.455 6.455
8 C -0.028 4.028
9 N -0.341 5.341
10 C 0.311 3.689
11 O -0.387 6.387
12 C 0.266 3.734
13 O -0.440 6.440
14 N -0.304 5.304
15 C -0.071 4.071
16 C -0.158 4.158
17 C -0.145 4.145
18 C 0.020 3.980
19 H 0.007 0.993
20 C -0.574 4.574
21 H 0.082 0.918
22 C -0.190 4.190
23 N -0.555 5.555
24 Si 0.785 3.215
25 H -0.192 1.192
26 H -0.215 1.215
27 H -0.193 1.193
28 C -0.001 4.001
29 H 0.097 0.903
30 H 0.050 0.950
31 H 0.091 0.909
32 H 0.129 0.871
33 H 0.080 0.920
34 H 0.112 0.888
35 H 0.128 0.872
36 H 0.066 0.934
37 H 0.106 0.894
38 H 0.080 0.920
39 H 0.143 0.857
40 H 0.144 0.856
41 H 0.256 0.744
42 H 0.175 0.825
43 H 0.091 0.909
44 H 0.066 0.934
45 H 0.119 0.881
46 H 0.073 0.927
47 H 0.076 0.924
48 H 0.070 0.930
49 H 0.064 0.936
50 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges -9.589 -8.905 -25.849 28.973
hybrid contribution 0.145 -0.198 2.034 2.049
sum -9.444 -9.103 -23.815 27.188
Atomic orbital electron populations
1.22157 0.95420 1.02964 1.01699 1.21617 0.94852 0.81249 1.03807
1.48083 1.64537 1.14692 1.05974 1.22030 0.98795 0.98046 0.84063
1.22294 0.97767 1.00746 1.02428 1.20654 0.77447 0.88435 0.84094
1.90743 1.53835 1.68200 1.32678 1.21532 1.05370 0.92762 0.83138
1.45576 1.64480 1.13667 1.10380 1.19791 0.77801 0.82581 0.88716
1.90270 1.50535 1.52444 1.45439 1.20422 0.79636 0.83565 0.89735
1.90756 1.51490 1.54846 1.46933 1.48471 1.63148 1.07545 1.11232
1.23359 0.98187 0.92236 0.93360 1.21824 0.96410 1.00119 0.97419
1.21564 1.00839 0.97675 0.94387 1.18986 0.91339 0.93288 0.94385
0.99308 1.21471 1.48887 0.94104 0.92890 0.91777 1.25909 0.94761
0.95065 1.03251 1.70056 1.49925 1.04135 1.31399 0.85584 0.79131
0.77855 0.78949 1.19167 1.21466 1.19298 1.22054 0.97520 1.00132
0.80431 0.90343 0.95011 0.90898 0.87056 0.91997 0.88764 0.87241
0.93423 0.89386 0.92001 0.85659 0.85558 0.74370 0.82536 0.90946
0.93436 0.88100 0.92738 0.92384 0.93006 0.93620 0.90059
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.87 10.24 71.98 0.74 -1.13 16
2 C 0.11 1.25 6.17 86.38 0.53 1.79 16
3 N -0.60 -7.77 2.47 -821.81 -2.03 -9.80 16
4 C 0.09 0.50 5.98 86.38 0.52 1.01 16
5 C -0.17 -0.91 10.24 71.98 0.74 -0.17 16
6 C 0.51 10.43 7.74 87.66 0.68 11.11 16
7 O -0.57 -17.28 15.25 -3.04 -0.05 -17.32 16
8 C 0.10 1.82 4.71 85.63 0.40 2.22 16
9 N -0.69 -19.37 5.52 -468.14 -2.58 -21.95 16
10 C 0.53 17.46 7.78 87.27 0.68 18.14 16
11 O -0.51 -15.55 13.10 -3.23 -0.04 -15.59 16
12 C 0.48 20.75 7.74 87.27 0.68 21.43 16
13 O -0.56 -28.34 15.94 -3.23 -0.05 -28.39 16
14 N -0.57 -24.66 2.97 -819.64 -2.43 -27.09 16
15 C 0.05 1.64 6.27 86.36 0.54 2.18 16
16 C -0.12 -3.99 6.08 30.67 0.19 -3.81 16
17 C -0.11 -4.33 5.10 30.62 0.16 -4.18 16
18 C 0.04 2.03 2.26 -11.32 -0.03 2.01 16
19 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16
20 C -0.54 -29.82 8.56 25.60 0.22 -29.60 16
21 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16
22 C 0.01 0.54 5.30 84.65 0.45 0.99 16
23 N -0.92 -56.11 11.41 21.44 0.24 -55.87 16
24 Si 0.96 44.65 29.54 68.60 2.03 46.68 16
25 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16
26 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16
27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16
28 C 0.12 6.18 5.41 86.51 0.47 6.65 16
29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16
30 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16
31 H 0.07 0.61 6.26 -2.39 -0.01 0.60 16
32 H 0.11 0.59 7.89 -2.39 -0.02 0.57 16
33 H 0.06 1.05 7.42 -2.39 -0.02 1.03 16
34 H 0.09 0.36 6.44 -2.39 -0.02 0.35 16
35 H 0.11 0.11 7.89 -2.39 -0.02 0.10 16
36 H 0.05 0.38 7.22 -2.39 -0.02 0.37 16
37 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16
38 H 0.06 0.35 6.26 -2.39 -0.01 0.33 16
39 H 0.13 1.84 7.40 -2.39 -0.02 1.82 16
40 H 0.13 1.82 7.19 -2.39 -0.02 1.80 16
41 H 0.42 13.51 6.93 -92.71 -0.64 12.86 16
42 H 0.16 4.90 3.78 -78.80 -0.30 4.60 16
43 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16
44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16
45 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16
46 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16
47 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16
48 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16
49 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16
50 H 0.08 4.90 5.20 -2.39 -0.01 4.89 16
Total: -1.00 -76.86 394.45 2.07 -74.79
By element:
Atomic # 1 Polarization: 25.89 SS G_CDS: 0.03 Total: 25.92 kcal
Atomic # 6 Polarization: 21.67 SS G_CDS: 6.95 Total: 28.62 kcal
Atomic # 7 Polarization: -107.91 SS G_CDS: -6.80 Total: -114.71 kcal
Atomic # 8 Polarization: -61.16 SS G_CDS: -0.14 Total: -61.30 kcal
Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal
Total: -76.86 2.07 -74.79 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001330512795.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.416 kcal
(2) G-P(sol) polarization free energy of solvation -76.859 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.275 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.793 kcal
(6) G-S(sol) free energy of system = (1) + (5) -113.209 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds