Wall clock time and date at job start Tue Mar 31 2020 22:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47403 * 2 1 4 4 C 1.50703 * 109.47161 * 240.00135 * 2 1 3 5 5 O 1.21283 * 119.99673 * 239.99977 * 4 2 1 6 6 N 1.34773 * 120.00188 * 60.00072 * 4 2 1 7 7 C 1.46502 * 119.99972 * 180.02562 * 6 4 2 8 8 H 1.08994 * 109.46795 * 324.99501 * 7 6 4 9 9 C 1.53004 * 109.46762 * 204.99597 * 7 6 4 10 10 N 1.46497 * 109.47174 * 54.99858 * 9 7 6 11 11 C 1.36942 * 120.00076 * 179.97438 * 10 9 7 12 12 H 1.07994 * 119.99664 * 0.02562 * 11 10 9 13 13 C 1.38806 * 119.99822 * 180.02562 * 11 10 9 14 14 N 1.31617 * 120.00323 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99654 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47593 * 59.99885 * 15 13 11 17 17 H 1.48508 * 109.47183 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46889 * 299.99389 * 15 13 11 19 19 C 1.52993 * 109.47368 * 84.99590 * 7 6 4 20 20 C 1.53002 * 109.47146 * 60.00004 * 19 7 6 21 21 C 1.53001 * 109.47181 * 179.97438 * 19 7 6 22 22 C 1.53006 * 109.47222 * 300.00133 * 19 7 6 23 23 N 1.46497 * 109.47269 * 119.99702 * 2 1 3 24 24 C 1.33872 * 122.76512 * 239.99703 * 23 2 1 25 25 O 1.21233 * 125.39808 * 0.02840 * 24 23 2 26 26 C 1.51311 * 109.20933 * 179.75759 * 24 23 2 27 27 C 1.54226 * 103.55422 * 0.24888 * 26 24 23 28 28 C 1.33877 * 122.76044 * 60.21412 * 23 2 1 29 29 O 1.21223 * 125.39865 * 359.97210 * 28 23 2 30 30 H 1.08998 * 109.46967 * 59.99679 * 1 2 3 31 31 H 1.08996 * 109.46696 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46854 * 299.99990 * 1 2 3 33 33 H 0.97003 * 119.99730 * 359.97438 * 6 4 2 34 34 H 1.09004 * 109.47153 * 174.99744 * 9 7 6 35 35 H 1.08997 * 109.47119 * 295.00017 * 9 7 6 36 36 H 0.96997 * 119.99976 * 359.97438 * 10 9 7 37 37 H 0.97006 * 119.99735 * 180.02562 * 14 13 11 38 38 H 1.08997 * 109.47414 * 60.00063 * 20 19 7 39 39 H 1.09008 * 109.47112 * 180.02562 * 20 19 7 40 40 H 1.09007 * 109.47104 * 299.99836 * 20 19 7 41 41 H 1.09002 * 109.47094 * 60.00528 * 21 19 7 42 42 H 1.09004 * 109.46972 * 179.97438 * 21 19 7 43 43 H 1.08997 * 109.47268 * 299.99869 * 21 19 7 44 44 H 1.08994 * 109.47037 * 60.00027 * 22 19 7 45 45 H 1.08999 * 109.47070 * 179.97438 * 22 19 7 46 46 H 1.09002 * 109.46787 * 299.99936 * 22 19 7 47 47 H 1.08999 * 110.60546 * 118.76366 * 26 24 23 48 48 H 1.09001 * 110.61015 * 241.56985 * 26 24 23 49 49 H 1.09001 * 110.61135 * 118.52128 * 27 26 24 50 50 H 1.09008 * 110.60384 * 241.48509 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 2.1947 -0.9409 -3.6507 8 1 3.1938 -1.3333 -3.4614 9 6 2.2463 0.0421 -4.8221 10 7 3.0552 1.2050 -4.4484 11 6 3.2446 2.2236 -5.3438 12 1 2.7973 2.1698 -6.3253 13 6 4.0114 3.3252 -4.9899 14 7 4.5560 3.3910 -3.7935 15 14 4.2691 4.7150 -6.2111 16 1 2.9547 5.2974 -6.5830 17 1 5.1195 5.7647 -5.5943 18 1 4.9388 4.1875 -7.4272 19 6 1.2503 -2.0945 -3.9943 20 6 -0.1521 -1.5435 -4.2600 21 6 1.7596 -2.8156 -5.2439 22 6 1.1986 -3.0775 -2.8229 23 7 2.0184 -0.6905 1.1962 24 6 2.7906 -0.0939 2.1126 25 8 3.1704 1.0566 2.0694 26 6 3.1088 -1.0811 3.2143 27 6 2.3842 -2.3671 2.7677 28 6 1.7326 -1.9714 1.4607 29 8 1.0549 -2.6976 0.7658 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.1488 0.5385 -2.5436 34 1 2.6922 -0.4474 -5.6879 35 1 1.2355 0.3668 -5.0687 36 1 3.4565 1.2535 -3.5667 37 1 5.0916 4.1610 -3.5461 38 1 -0.1154 -0.8433 -5.0945 39 1 -0.8251 -2.3655 -4.5043 40 1 -0.5152 -1.0295 -3.3700 41 1 2.7588 -3.2082 -5.0550 42 1 1.0869 -3.6378 -5.4884 43 1 1.7960 -2.1152 -6.0782 44 1 0.8356 -2.5634 -1.9330 45 1 0.5254 -3.8991 -3.0676 46 1 2.1978 -3.4699 -2.6337 47 1 4.1837 -1.2495 3.2798 48 1 2.7180 -0.7295 4.1692 49 1 3.0985 -3.1754 2.6111 50 1 1.6303 -2.6566 3.4999 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332809673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:35 Heat of formation + Delta-G solvation = -90.703788 kcal Electronic energy + Delta-G solvation = -32130.849284 eV Core-core repulsion = 27965.839381 eV Total energy + Delta-G solvation = -4165.009903 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.12063 -39.94080 -38.56335 -37.42810 -35.83321 -34.47990 -34.32314 -33.18455 -31.16355 -30.27098 -27.66091 -27.08731 -26.68703 -26.29655 -24.76946 -23.66735 -22.50446 -21.61551 -20.87636 -19.26244 -18.52636 -17.70390 -17.24272 -16.99733 -16.70047 -16.04691 -15.69756 -15.39548 -14.80854 -14.66319 -14.25348 -14.18058 -14.05897 -13.95186 -13.86027 -13.52864 -13.44638 -13.21894 -13.07185 -12.72279 -12.53444 -12.42824 -12.16295 -12.04156 -11.78883 -11.70888 -11.57525 -11.31138 -11.16735 -11.05985 -10.79610 -10.70759 -10.57343 -10.45745 -10.23584 -10.19891 -10.00788 -9.91465 -9.73566 -9.32020 -8.88785 -8.57905 -6.94898 -5.77400 -3.07464 1.49926 2.27697 2.65691 2.85905 3.42595 3.45841 3.47865 3.48921 3.93125 4.07019 4.24417 4.56291 4.59856 4.71863 4.82579 4.96549 4.99543 5.10157 5.17412 5.19153 5.23785 5.35378 5.38000 5.49480 5.54221 5.60660 5.66317 5.76274 5.82763 5.89683 5.94426 5.96736 6.09812 6.13369 6.17552 6.23863 6.37240 6.49285 6.51410 6.54863 6.71366 6.76353 6.79448 6.96944 7.28529 7.67579 7.69303 7.83352 8.40127 8.47868 9.51809 10.07899 10.43030 11.44695 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010488 B = 0.004107 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.957955 B = 6815.310725 C = 8812.692420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.105 3.895 3 H 0.132 0.868 4 C 0.514 3.486 5 O -0.528 6.528 6 N -0.701 5.701 7 C 0.152 3.848 8 H 0.085 0.915 9 C 0.142 3.858 10 N -0.731 5.731 11 C -0.244 4.244 12 H 0.070 0.930 13 C -0.010 4.010 14 N -0.930 5.930 15 Si 0.907 3.093 16 H -0.286 1.286 17 H -0.291 1.291 18 H -0.286 1.286 19 C -0.077 4.077 20 C -0.140 4.140 21 C -0.140 4.140 22 C -0.127 4.127 23 N -0.556 5.556 24 C 0.525 3.475 25 O -0.479 6.479 26 C -0.154 4.154 27 C -0.155 4.155 28 C 0.533 3.467 29 O -0.466 6.466 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.403 0.597 34 H 0.035 0.965 35 H 0.029 0.971 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.038 0.962 46 H 0.057 0.943 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.590 -12.809 13.136 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.000 4.000 3 H 0.150 0.850 4 C 0.298 3.702 5 O -0.404 6.404 6 N -0.352 5.352 7 C 0.047 3.953 8 H 0.103 0.897 9 C 0.014 3.986 10 N -0.376 5.376 11 C -0.375 4.375 12 H 0.088 0.912 13 C -0.207 4.207 14 N -0.578 5.578 15 Si 0.738 3.262 16 H -0.213 1.213 17 H -0.217 1.217 18 H -0.213 1.213 19 C -0.078 4.078 20 C -0.197 4.197 21 C -0.198 4.198 22 C -0.185 4.185 23 N -0.300 5.300 24 C 0.314 3.686 25 O -0.350 6.350 26 C -0.194 4.194 27 C -0.195 4.195 28 C 0.321 3.679 29 O -0.336 6.336 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.238 0.762 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.251 -13.169 12.639 20.463 hybrid contribution 0.195 1.340 -0.518 1.449 sum -9.056 -11.830 12.121 19.206 Atomic orbital electron populations 1.22104 0.91466 1.04428 1.03821 1.21276 0.96745 0.98635 0.83374 0.85028 1.20173 0.80771 0.84634 0.84654 1.90695 1.37677 1.25624 1.86401 1.45790 1.53044 1.31504 1.04819 1.21283 0.97516 0.92050 0.84456 0.89664 1.21099 0.95452 0.88224 0.93815 1.42352 1.60200 1.18303 1.16757 1.19152 1.26213 0.96734 0.95410 0.91236 1.24740 1.00389 0.98706 0.96838 1.69656 1.38107 1.30954 1.19107 0.86284 0.77594 0.82018 0.80337 1.21271 1.21701 1.21290 1.20911 0.95532 0.95315 0.96059 1.21903 0.95550 1.00617 1.01668 1.21882 1.00851 0.99970 0.97074 1.21866 1.01586 0.97708 0.97299 1.46455 1.47282 1.14232 1.22000 1.20852 0.76183 0.88067 0.83478 1.90828 1.50654 1.16866 1.76605 1.22440 1.04627 0.93476 0.98823 1.22443 1.02012 0.99426 0.95628 1.20621 0.79433 0.80417 0.87392 1.90743 1.35911 1.54153 1.52790 0.89940 0.90324 0.91122 0.76150 0.94718 0.95344 0.78112 0.93399 0.91973 0.93234 0.92949 0.92676 0.92930 0.91959 0.92112 0.94289 0.92417 0.86163 0.86269 0.86256 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.07 37.16 0.34 -1.41 16 2 C 0.11 1.46 3.12 -69.08 -0.22 1.24 16 3 H 0.13 1.92 7.41 -51.93 -0.38 1.54 16 4 C 0.51 8.44 5.14 -10.99 -0.06 8.38 16 5 O -0.53 -9.95 11.91 -10.96 -0.13 -10.09 16 6 N -0.70 -11.20 3.53 -53.81 -0.19 -11.39 16 7 C 0.15 2.57 1.69 -67.93 -0.11 2.46 16 8 H 0.09 1.68 7.58 -51.93 -0.39 1.29 16 9 C 0.14 2.74 5.10 -4.04 -0.02 2.72 16 10 N -0.73 -18.03 5.43 -59.91 -0.33 -18.35 16 11 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 12 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 13 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 14 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 15 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 C -0.08 -1.10 0.62 -154.51 -0.10 -1.19 16 20 C -0.14 -1.79 7.97 37.16 0.30 -1.50 16 21 C -0.14 -1.86 8.12 37.16 0.30 -1.56 16 22 C -0.13 -1.93 7.00 37.16 0.26 -1.67 16 23 N -0.56 -7.10 2.28 -109.48 -0.25 -7.35 16 24 C 0.53 6.40 8.08 -11.09 -0.09 6.31 16 25 O -0.48 -7.67 17.23 5.60 0.10 -7.57 16 26 C -0.15 -1.03 7.03 -26.94 -0.19 -1.22 16 27 C -0.16 -1.05 7.03 -26.94 -0.19 -1.24 16 28 C 0.53 6.38 6.70 -11.09 -0.07 6.31 16 29 O -0.47 -6.96 15.08 -10.90 -0.16 -7.12 16 30 H 0.08 0.80 7.56 -51.93 -0.39 0.41 16 31 H 0.08 0.94 6.66 -51.93 -0.35 0.59 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.40 6.12 8.02 -40.82 -0.33 5.79 16 34 H 0.04 0.69 6.71 -51.93 -0.35 0.34 16 35 H 0.03 0.53 6.17 -51.93 -0.32 0.21 16 36 H 0.38 10.22 7.33 -40.82 -0.30 9.92 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.06 0.81 6.32 -51.93 -0.33 0.48 16 39 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 40 H 0.05 0.66 7.60 -51.92 -0.39 0.26 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.83 6.54 -51.93 -0.34 0.49 16 44 H 0.06 1.00 5.74 -51.93 -0.30 0.70 16 45 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.98 7.53 -51.93 -0.39 0.58 16 47 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.12 0.48 8.14 -51.92 -0.42 0.06 16 LS Contribution 392.14 15.07 5.91 5.91 Total: -1.00 -35.29 392.14 -7.36 -42.65 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -7.91 Total: 13.04 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -0.10 Total: 10.38 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -0.04 Total: -64.49 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.20 Total: -24.78 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.29 -7.36 -42.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332809673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.051 kcal (2) G-P(sol) polarization free energy of solvation -35.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds