Wall clock time and date at job start Tue Mar 31 2020 22:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47403 * 2 1 4 4 C 1.50703 * 109.47161 * 240.00135 * 2 1 3 5 5 O 1.21283 * 119.99673 * 239.99977 * 4 2 1 6 6 N 1.34773 * 120.00188 * 60.00072 * 4 2 1 7 7 C 1.46502 * 119.99972 * 180.02562 * 6 4 2 8 8 H 1.08994 * 109.46795 * 324.99501 * 7 6 4 9 9 C 1.53004 * 109.46762 * 204.99597 * 7 6 4 10 10 N 1.46497 * 109.47174 * 54.99858 * 9 7 6 11 11 C 1.36942 * 120.00076 * 179.97438 * 10 9 7 12 12 H 1.07994 * 119.99664 * 0.02562 * 11 10 9 13 13 C 1.38806 * 119.99822 * 180.02562 * 11 10 9 14 14 N 1.31617 * 120.00323 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99654 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47593 * 59.99885 * 15 13 11 17 17 H 1.48508 * 109.47183 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46889 * 299.99389 * 15 13 11 19 19 C 1.52993 * 109.47368 * 84.99590 * 7 6 4 20 20 C 1.53002 * 109.47146 * 60.00004 * 19 7 6 21 21 C 1.53001 * 109.47181 * 179.97438 * 19 7 6 22 22 C 1.53006 * 109.47222 * 300.00133 * 19 7 6 23 23 N 1.46497 * 109.47269 * 119.99702 * 2 1 3 24 24 C 1.33872 * 122.76512 * 239.99703 * 23 2 1 25 25 O 1.21233 * 125.39808 * 0.02840 * 24 23 2 26 26 C 1.51311 * 109.20933 * 179.75759 * 24 23 2 27 27 C 1.54226 * 103.55422 * 0.24888 * 26 24 23 28 28 C 1.33877 * 122.76044 * 60.21412 * 23 2 1 29 29 O 1.21223 * 125.39865 * 359.97210 * 28 23 2 30 30 H 1.08998 * 109.46967 * 59.99679 * 1 2 3 31 31 H 1.08996 * 109.46696 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46854 * 299.99990 * 1 2 3 33 33 H 0.97003 * 119.99730 * 359.97438 * 6 4 2 34 34 H 1.09004 * 109.47153 * 174.99744 * 9 7 6 35 35 H 1.08997 * 109.47119 * 295.00017 * 9 7 6 36 36 H 0.96997 * 119.99976 * 359.97438 * 10 9 7 37 37 H 0.97006 * 119.99735 * 180.02562 * 14 13 11 38 38 H 1.08997 * 109.47414 * 60.00063 * 20 19 7 39 39 H 1.09008 * 109.47112 * 180.02562 * 20 19 7 40 40 H 1.09007 * 109.47104 * 299.99836 * 20 19 7 41 41 H 1.09002 * 109.47094 * 60.00528 * 21 19 7 42 42 H 1.09004 * 109.46972 * 179.97438 * 21 19 7 43 43 H 1.08997 * 109.47268 * 299.99869 * 21 19 7 44 44 H 1.08994 * 109.47037 * 60.00027 * 22 19 7 45 45 H 1.08999 * 109.47070 * 179.97438 * 22 19 7 46 46 H 1.09002 * 109.46787 * 299.99936 * 22 19 7 47 47 H 1.08999 * 110.60546 * 118.76366 * 26 24 23 48 48 H 1.09001 * 110.61015 * 241.56985 * 26 24 23 49 49 H 1.09001 * 110.61135 * 118.52128 * 27 26 24 50 50 H 1.09008 * 110.60384 * 241.48509 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 2.1947 -0.9409 -3.6507 8 1 3.1938 -1.3333 -3.4614 9 6 2.2463 0.0421 -4.8221 10 7 3.0552 1.2050 -4.4484 11 6 3.2446 2.2236 -5.3438 12 1 2.7973 2.1698 -6.3253 13 6 4.0114 3.3252 -4.9899 14 7 4.5560 3.3910 -3.7935 15 14 4.2691 4.7150 -6.2111 16 1 2.9547 5.2974 -6.5830 17 1 5.1195 5.7647 -5.5943 18 1 4.9388 4.1875 -7.4272 19 6 1.2503 -2.0945 -3.9943 20 6 -0.1521 -1.5435 -4.2600 21 6 1.7596 -2.8156 -5.2439 22 6 1.1986 -3.0775 -2.8229 23 7 2.0184 -0.6905 1.1962 24 6 2.7906 -0.0939 2.1126 25 8 3.1704 1.0566 2.0694 26 6 3.1088 -1.0811 3.2143 27 6 2.3842 -2.3671 2.7677 28 6 1.7326 -1.9714 1.4607 29 8 1.0549 -2.6976 0.7658 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.1488 0.5385 -2.5436 34 1 2.6922 -0.4474 -5.6879 35 1 1.2355 0.3668 -5.0687 36 1 3.4565 1.2535 -3.5667 37 1 5.0916 4.1610 -3.5461 38 1 -0.1154 -0.8433 -5.0945 39 1 -0.8251 -2.3655 -4.5043 40 1 -0.5152 -1.0295 -3.3700 41 1 2.7588 -3.2082 -5.0550 42 1 1.0869 -3.6378 -5.4884 43 1 1.7960 -2.1152 -6.0782 44 1 0.8356 -2.5634 -1.9330 45 1 0.5254 -3.8991 -3.0676 46 1 2.1978 -3.4699 -2.6337 47 1 4.1837 -1.2495 3.2798 48 1 2.7180 -0.7295 4.1692 49 1 3.0985 -3.1754 2.6111 50 1 1.6303 -2.6566 3.4999 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332809673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:34 Heat of formation + Delta-G solvation = -114.913906 kcal Electronic energy + Delta-G solvation = -32131.899113 eV Core-core repulsion = 27965.839381 eV Total energy + Delta-G solvation = -4166.059732 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.07725 -41.23324 -39.59156 -38.73422 -36.86904 -36.21706 -35.39661 -34.51438 -33.01552 -31.27185 -29.28333 -28.16770 -27.90985 -27.06179 -26.07706 -25.33878 -23.40507 -23.15389 -22.07483 -20.36830 -19.86698 -19.18007 -18.50740 -18.27325 -17.66307 -17.22818 -16.99557 -16.71745 -16.45296 -15.74260 -15.60442 -15.41947 -15.22837 -15.02606 -14.85368 -14.84587 -14.77378 -14.48138 -14.23715 -13.95089 -13.66706 -13.49057 -13.34787 -13.13256 -13.04331 -12.95238 -12.89880 -12.71267 -12.54603 -12.36599 -12.23344 -12.09195 -12.04495 -11.77446 -11.65717 -11.54299 -11.34599 -11.30153 -10.96791 -10.94220 -10.54043 -9.94579 -9.01150 -7.94944 -5.24899 0.57765 1.33242 1.46987 1.49729 1.54417 1.55967 1.76967 2.24152 2.55265 3.21444 3.30402 3.39257 3.53598 3.62882 3.66454 3.78726 3.84211 3.90101 4.02668 4.17392 4.19793 4.22892 4.31967 4.42283 4.58474 4.61864 4.69578 4.75317 4.80562 4.83164 4.87530 4.90679 4.92823 4.95310 4.98472 5.05376 5.07959 5.13718 5.23574 5.29449 5.42749 5.49311 5.55174 5.60628 5.85458 6.24902 6.38213 6.46248 6.79840 7.16383 7.32238 8.05777 8.29394 9.27834 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010488 B = 0.004107 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.957955 B = 6815.310725 C = 8812.692420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.102 3.898 3 H 0.117 0.883 4 C 0.510 3.490 5 O -0.556 6.556 6 N -0.698 5.698 7 C 0.162 3.838 8 H 0.051 0.949 9 C 0.146 3.854 10 N -0.743 5.743 11 C -0.244 4.244 12 H 0.080 0.920 13 C -0.073 4.073 14 N -0.970 5.970 15 Si 0.973 3.027 16 H -0.274 1.274 17 H -0.299 1.299 18 H -0.280 1.280 19 C -0.070 4.070 20 C -0.136 4.136 21 C -0.138 4.138 22 C -0.115 4.115 23 N -0.564 5.564 24 C 0.515 3.485 25 O -0.529 6.529 26 C -0.137 4.137 27 C -0.140 4.140 28 C 0.520 3.480 29 O -0.502 6.502 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.407 0.593 34 H 0.037 0.963 35 H 0.047 0.953 36 H 0.372 0.628 37 H 0.249 0.751 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.046 0.954 45 H 0.055 0.945 46 H 0.032 0.968 47 H 0.137 0.863 48 H 0.156 0.844 49 H 0.134 0.866 50 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.142 -13.796 13.533 22.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.005 4.005 3 H 0.135 0.865 4 C 0.295 3.705 5 O -0.434 6.434 6 N -0.349 5.349 7 C 0.057 3.943 8 H 0.069 0.931 9 C 0.019 3.981 10 N -0.386 5.386 11 C -0.376 4.376 12 H 0.098 0.902 13 C -0.265 4.265 14 N -0.620 5.620 15 Si 0.802 3.198 16 H -0.200 1.200 17 H -0.226 1.226 18 H -0.206 1.206 19 C -0.071 4.071 20 C -0.193 4.193 21 C -0.196 4.196 22 C -0.172 4.172 23 N -0.307 5.307 24 C 0.307 3.693 25 O -0.403 6.403 26 C -0.176 4.176 27 C -0.179 4.179 28 C 0.312 3.688 29 O -0.374 6.374 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.243 0.757 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.203 0.797 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.051 0.949 47 H 0.155 0.845 48 H 0.173 0.827 49 H 0.152 0.848 50 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.843 -14.195 13.016 22.102 hybrid contribution 0.670 1.567 -0.672 1.832 sum -10.173 -12.628 12.344 20.379 Atomic orbital electron populations 1.22042 0.89124 1.04224 1.05202 1.21246 0.98576 0.97544 0.83102 0.86530 1.20656 0.80150 0.84352 0.85349 1.90668 1.38899 1.26988 1.86869 1.45747 1.52893 1.31532 1.04686 1.21082 0.96867 0.92350 0.84036 0.93054 1.21223 0.95203 0.86977 0.94685 1.42534 1.60799 1.19382 1.15864 1.19594 1.24994 0.97026 0.95949 0.90217 1.25548 1.00973 1.01426 0.98547 1.69835 1.39519 1.31472 1.21185 0.85226 0.77672 0.78803 0.78116 1.19983 1.22592 1.20582 1.20862 0.95968 0.94047 0.96266 1.21864 0.94425 1.01262 1.01727 1.21876 1.00865 1.00554 0.96300 1.21712 1.00357 0.98101 0.97017 1.46764 1.47433 1.14937 1.21544 1.21916 0.74880 0.88198 0.84316 1.90798 1.52434 1.19231 1.77847 1.22581 1.05820 0.91349 0.97888 1.22571 1.02685 0.99578 0.93038 1.21629 0.78814 0.79602 0.88787 1.90716 1.37607 1.54723 1.54377 0.88911 0.91130 0.89409 0.75672 0.94505 0.93559 0.79667 0.94191 0.91926 0.91309 0.92840 0.93663 0.90703 0.91895 0.93491 0.92553 0.94862 0.84480 0.82663 0.84792 0.82812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.07 71.98 0.65 -2.58 16 2 C 0.10 2.93 3.12 44.25 0.14 3.07 16 3 H 0.12 3.68 7.41 -2.38 -0.02 3.66 16 4 C 0.51 17.52 5.14 87.66 0.45 17.97 16 5 O -0.56 -22.02 11.91 12.75 0.15 -21.86 16 6 N -0.70 -23.08 3.53 -442.54 -1.56 -24.64 16 7 C 0.16 5.61 1.69 44.99 0.08 5.68 16 8 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 9 C 0.15 5.61 5.10 86.38 0.44 6.05 16 10 N -0.74 -37.21 5.43 -343.46 -1.87 -39.07 16 11 C -0.24 -13.40 9.99 84.03 0.84 -12.56 16 12 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 13 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 14 N -0.97 -60.15 13.06 21.65 0.28 -59.87 16 15 Si 0.97 46.12 29.55 68.60 2.03 48.15 16 16 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 C -0.07 -1.95 0.62 -52.18 -0.03 -1.99 16 20 C -0.14 -3.20 7.97 71.98 0.57 -2.63 16 21 C -0.14 -3.50 8.12 71.98 0.58 -2.92 16 22 C -0.11 -3.46 7.00 71.98 0.50 -2.95 16 23 N -0.56 -14.53 2.28 -738.13 -1.68 -16.21 16 24 C 0.51 12.46 8.08 87.99 0.71 13.17 16 25 O -0.53 -17.55 17.23 -2.88 -0.05 -17.60 16 26 C -0.14 -1.46 7.03 30.46 0.21 -1.25 16 27 C -0.14 -1.47 7.03 30.46 0.21 -1.26 16 28 C 0.52 12.11 6.70 87.99 0.59 12.70 16 29 O -0.50 -14.99 15.08 12.93 0.20 -14.80 16 30 H 0.09 1.78 7.56 -2.39 -0.02 1.76 16 31 H 0.07 1.69 6.66 -2.39 -0.02 1.67 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 33 H 0.41 12.68 8.02 -92.71 -0.74 11.94 16 34 H 0.04 1.44 6.71 -2.39 -0.02 1.42 16 35 H 0.05 1.67 6.17 -2.39 -0.01 1.65 16 36 H 0.37 20.45 7.33 -92.71 -0.68 19.77 16 37 H 0.25 15.16 8.31 -92.70 -0.77 14.39 16 38 H 0.06 1.48 6.32 -2.39 -0.02 1.47 16 39 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.05 1.25 7.60 -2.38 -0.02 1.23 16 41 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.06 1.58 6.54 -2.39 -0.02 1.57 16 44 H 0.05 1.55 5.74 -2.39 -0.01 1.54 16 45 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.03 1.14 7.53 -2.39 -0.02 1.13 16 47 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.16 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.15 0.57 8.14 -2.38 -0.02 0.55 16 Total: -1.00 -80.14 392.14 3.47 -76.68 By element: Atomic # 1 Polarization: 42.87 SS G_CDS: -0.45 Total: 42.42 kcal Atomic # 6 Polarization: 20.38 SS G_CDS: 6.42 Total: 26.81 kcal Atomic # 7 Polarization: -134.96 SS G_CDS: -4.83 Total: -139.79 kcal Atomic # 8 Polarization: -54.55 SS G_CDS: 0.30 Total: -54.25 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -80.14 3.47 -76.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332809673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.235 kcal (2) G-P(sol) polarization free energy of solvation -80.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds