Wall clock time and date at job start Tue Mar 31 2020 23:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.46947 * 2 1 4 4 C 1.46493 * 120.00364 * 94.98118 * 3 2 1 5 5 C 1.52998 * 109.47330 * 269.99707 * 4 3 2 6 6 C 1.50696 * 109.47534 * 179.97438 * 5 4 3 7 7 O 1.21285 * 120.00115 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00419 * 179.97438 * 6 5 4 9 9 C 1.46494 * 120.00136 * 180.02562 * 8 6 5 10 10 C 1.34780 * 119.99885 * 274.97755 * 3 2 1 11 11 O 1.21352 * 119.99933 * 174.78668 * 10 3 2 12 12 C 1.49455 * 119.99789 * 354.78916 * 10 3 2 13 13 O 1.21342 * 120.00147 * 85.27558 * 12 10 3 14 14 N 1.34777 * 119.99608 * 265.27147 * 12 10 3 15 15 C 1.46924 * 120.63444 * 354.58577 * 14 12 10 16 16 C 1.53627 * 108.54133 * 126.36735 * 15 14 12 17 17 C 1.53037 * 109.24354 * 54.86262 * 16 15 14 18 18 C 1.53048 * 109.53446 * 298.51076 * 17 16 15 19 19 H 1.09000 * 109.49445 * 301.40975 * 18 17 16 20 20 C 1.50702 * 109.52275 * 181.33076 * 18 17 16 21 21 H 1.08000 * 120.00168 * 0.14825 * 20 18 17 22 22 C 1.37880 * 119.99811 * 180.14127 * 20 18 17 23 23 N 1.31516 * 119.99881 * 0.02562 * 22 20 18 24 24 Si 1.86794 * 119.99615 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47391 * 60.00535 * 24 22 20 26 26 H 1.48502 * 109.46885 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47739 * 300.00252 * 24 22 20 28 28 C 1.46930 * 120.62721 * 174.87142 * 14 12 10 29 29 H 1.09003 * 109.47034 * 60.00652 * 1 2 3 30 30 H 1.08996 * 109.47205 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47375 * 300.00226 * 1 2 3 32 32 H 1.09002 * 109.47375 * 239.99774 * 2 1 3 33 33 H 1.08998 * 109.47010 * 119.99815 * 2 1 3 34 34 H 1.09003 * 109.47619 * 149.99789 * 4 3 2 35 35 H 1.09002 * 109.47315 * 30.00012 * 4 3 2 36 36 H 1.08999 * 109.46963 * 59.99965 * 5 4 3 37 37 H 1.08999 * 109.47423 * 299.99934 * 5 4 3 38 38 H 0.97001 * 119.99799 * 359.73136 * 8 6 5 39 39 H 1.09001 * 109.47088 * 59.72725 * 9 8 6 40 40 H 1.09002 * 109.47240 * 179.72452 * 9 8 6 41 41 H 1.08997 * 109.47675 * 299.73057 * 9 8 6 42 42 H 1.08996 * 109.59314 * 246.20096 * 15 14 12 43 43 H 1.09006 * 109.58339 * 6.63066 * 15 14 12 44 44 H 1.08994 * 109.63687 * 294.86456 * 16 15 14 45 45 H 1.09006 * 109.43230 * 174.72542 * 16 15 14 46 46 H 1.08996 * 109.46301 * 178.49158 * 17 16 15 47 47 H 1.09000 * 109.44779 * 58.51627 * 17 16 15 48 48 H 0.96995 * 119.99508 * 179.97438 * 23 22 20 49 49 H 1.08993 * 109.58540 * 353.36729 * 28 14 12 50 50 H 1.08995 * 109.58999 * 113.79986 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3663 2.0352 1.2638 5 6 1.1326 2.7419 1.8291 6 6 1.4904 3.4141 3.1295 7 8 2.6210 3.3360 3.5615 8 7 0.5543 4.1029 3.8120 9 6 0.9023 4.7568 5.0759 10 6 2.1474 2.0503 -1.1628 11 8 2.4607 3.2227 -1.1567 12 6 1.9046 1.3484 -2.4598 13 8 0.7774 1.2604 -2.9003 14 7 2.9377 0.8132 -3.1400 15 6 4.3194 1.0129 -2.6820 16 6 4.9920 -0.3614 -2.5448 17 6 4.8728 -1.1159 -3.8709 18 6 3.3952 -1.3344 -4.2044 19 1 2.9199 -1.8959 -3.4001 20 6 3.2786 -2.1059 -5.4937 21 1 4.1692 -2.4126 -6.0219 22 6 2.0347 -2.4203 -5.9988 23 7 0.9502 -2.0465 -5.3557 24 14 1.8903 -3.3760 -7.5973 25 1 2.5606 -4.6928 -7.4491 26 1 0.4561 -3.5839 -7.9218 27 1 2.5391 -2.6107 -8.6921 28 6 2.7040 0.0243 -4.3573 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.1557 2.7663 1.0894 35 1 2.7148 1.2872 1.9761 36 1 0.3432 2.0108 2.0036 37 1 0.7841 3.4899 1.1169 38 1 -0.3488 4.1692 3.4642 39 1 1.6954 5.4841 4.9023 40 1 0.0248 5.2647 5.4759 41 1 1.2459 4.0082 5.7898 42 1 4.8617 1.6172 -3.4091 43 1 4.3147 1.5171 -1.7156 44 1 4.5017 -0.9321 -1.7562 45 1 6.0448 -0.2268 -2.2963 46 1 5.3723 -2.0810 -3.7859 47 1 5.3416 -0.5329 -4.6636 48 1 0.0752 -2.2674 -5.7113 49 1 1.6333 -0.1241 -4.4966 50 1 3.1173 0.5496 -5.2182 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345849336.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:10 Heat of formation + Delta-G solvation = -110.808776 kcal Electronic energy + Delta-G solvation = -31186.906823 eV Core-core repulsion = 27021.025103 eV Total energy + Delta-G solvation = -4165.881720 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.72021 -39.85761 -38.48542 -36.75713 -36.27563 -34.90093 -33.44763 -32.35398 -31.86141 -30.16393 -29.86466 -27.53700 -25.98459 -25.10351 -24.07228 -23.44009 -21.96230 -21.69214 -20.67067 -19.37587 -18.50139 -17.63895 -17.35921 -16.74781 -16.32536 -16.08221 -16.05063 -15.80572 -14.86013 -14.67473 -14.46065 -14.26472 -14.00477 -13.79718 -13.74463 -13.55733 -13.41347 -12.94381 -12.86331 -12.73209 -12.68122 -12.62245 -12.34980 -12.19465 -11.99002 -11.81507 -11.46480 -11.06492 -11.01843 -10.95465 -10.78410 -10.58257 -10.44835 -10.30493 -10.20702 -9.99072 -9.47771 -9.29682 -9.20752 -8.93134 -8.86188 -8.50136 -7.93196 -6.07253 -4.15271 2.35065 2.36683 2.41079 2.92234 3.14622 3.28700 3.34923 3.36223 3.70582 4.37507 4.47020 4.50754 4.71880 4.79669 4.90522 4.99093 5.14435 5.20801 5.22751 5.25599 5.30202 5.40562 5.42796 5.47420 5.55918 5.62080 5.71772 5.84318 5.93412 5.95669 6.04608 6.10422 6.24157 6.30625 6.42472 6.51739 6.56879 6.76695 6.88353 7.00048 7.09948 7.10633 7.14041 7.51545 7.75929 7.86917 7.89226 7.94692 8.03448 8.28134 8.49505 8.88221 9.50716 10.98401 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022108 B = 0.002690 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.215800 B =10407.329360 C =10919.223491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.100 3.900 3 N -0.600 5.600 4 C 0.133 3.867 5 C -0.161 4.161 6 C 0.519 3.481 7 O -0.539 6.539 8 N -0.739 5.739 9 C 0.087 3.913 10 C 0.519 3.481 11 O -0.521 6.521 12 C 0.507 3.493 13 O -0.511 6.511 14 N -0.587 5.587 15 C 0.107 3.893 16 C -0.131 4.131 17 C -0.112 4.112 18 C 0.042 3.958 19 H 0.030 0.970 20 C -0.521 4.521 21 H 0.059 0.941 22 C 0.063 3.937 23 N -0.882 5.882 24 Si 0.894 3.106 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.110 3.890 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.403 0.597 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.051 0.949 48 H 0.265 0.735 49 H 0.125 0.875 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.543 7.861 17.822 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.022 4.022 3 N -0.335 5.335 4 C 0.010 3.990 5 C -0.202 4.202 6 C 0.305 3.695 7 O -0.416 6.416 8 N -0.391 5.391 9 C -0.057 4.057 10 C 0.302 3.698 11 O -0.396 6.396 12 C 0.288 3.712 13 O -0.386 6.386 14 N -0.320 5.320 15 C -0.017 4.017 16 C -0.169 4.169 17 C -0.150 4.150 18 C 0.023 3.977 19 H 0.048 0.952 20 C -0.559 4.559 21 H 0.077 0.923 22 C -0.140 4.140 23 N -0.519 5.519 24 Si 0.721 3.279 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.202 1.202 28 C -0.009 4.009 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.237 0.763 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.143 0.857 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.355 8.370 17.870 19.736 hybrid contribution -0.684 -0.388 -0.934 1.221 sum -1.040 7.982 16.936 18.751 Atomic orbital electron populations 1.22289 0.95039 1.03049 1.02888 1.21751 0.95407 0.81023 1.04043 1.48086 1.65112 1.14648 1.05645 1.21209 0.95829 0.97942 0.84030 1.22132 1.01467 1.01719 0.94845 1.20633 0.84923 0.78203 0.85713 1.90718 1.20500 1.60759 1.69601 1.45842 1.14085 1.54660 1.24496 1.21532 1.01349 0.97557 0.85281 1.20811 0.76280 0.87326 0.85334 1.90753 1.46368 1.15418 1.87071 1.19946 0.86157 0.79791 0.85278 1.90797 1.21889 1.57171 1.68732 1.48584 1.05071 1.50155 1.28236 1.21811 0.82775 0.97815 0.99258 1.22018 0.99325 0.95558 1.00043 1.21650 1.00310 0.98676 0.94343 1.18969 0.89384 0.91837 0.97477 0.95187 1.21030 0.92345 1.35204 1.07334 0.92280 1.25042 0.95949 0.95630 0.97330 1.69845 0.97800 1.45528 1.38762 0.86630 0.77008 0.80431 0.83790 1.20263 1.21253 1.20221 1.22491 1.06551 0.90712 0.81145 0.90725 0.91080 0.92843 0.89508 0.89644 0.88935 0.89211 0.88312 0.88087 0.76336 0.92199 0.90706 0.92215 0.91192 0.91489 0.92049 0.91915 0.92743 0.92990 0.92522 0.85717 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.20 37.16 0.38 -1.75 16 2 C 0.10 1.25 5.98 -4.04 -0.02 1.23 16 3 N -0.60 -8.16 2.48 -174.20 -0.43 -8.59 16 4 C 0.13 1.55 4.70 -4.05 -0.02 1.53 16 5 C -0.16 -1.56 6.02 -27.89 -0.17 -1.73 16 6 C 0.52 5.42 7.83 -10.99 -0.09 5.34 16 7 O -0.54 -7.59 15.98 5.55 0.09 -7.50 16 8 N -0.74 -5.40 5.71 -67.08 -0.38 -5.79 16 9 C 0.09 0.54 10.70 59.84 0.64 1.18 16 10 C 0.52 9.04 5.43 -11.58 -0.06 8.98 16 11 O -0.52 -10.04 16.70 5.50 0.09 -9.95 16 12 C 0.51 10.29 5.68 -11.58 -0.07 10.22 16 13 O -0.51 -11.96 15.33 5.50 0.08 -11.88 16 14 N -0.59 -11.65 2.97 -173.01 -0.51 -12.17 16 15 C 0.11 1.75 6.39 -3.49 -0.02 1.72 16 16 C -0.13 -2.03 6.10 -26.39 -0.16 -2.19 16 17 C -0.11 -2.11 5.11 -26.69 -0.14 -2.24 16 18 C 0.04 0.98 2.25 -91.64 -0.21 0.78 16 19 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 20 C -0.52 -13.45 8.57 -34.44 -0.29 -13.75 16 21 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 22 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 23 N -0.88 -24.44 11.39 55.43 0.63 -23.81 16 24 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 C 0.11 2.56 5.38 -3.71 -0.02 2.54 16 29 H 0.07 1.16 6.89 -51.93 -0.36 0.80 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.52 6.62 -51.93 -0.34 0.18 16 32 H 0.09 1.31 6.98 -51.93 -0.36 0.95 16 33 H 0.09 0.81 7.84 -51.93 -0.41 0.41 16 34 H 0.09 1.25 7.46 -51.93 -0.39 0.86 16 35 H 0.09 0.92 7.82 -51.93 -0.41 0.51 16 36 H 0.10 0.77 6.62 -51.93 -0.34 0.43 16 37 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.40 1.85 8.83 -40.82 -0.36 1.48 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.07 1.02 6.29 -51.93 -0.33 0.70 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 48 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.12 3.35 5.15 -51.93 -0.27 3.09 16 50 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 401.30 15.07 6.05 6.05 Total: -1.00 -32.90 401.30 -7.92 -40.82 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -8.18 Total: 3.79 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: -0.34 Total: 13.44 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.70 Total: -50.35 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: 0.26 Total: -29.33 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.90 -7.92 -40.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345849336.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.986 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds