Wall clock time and date at job start Tue Mar 31 2020 23:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.46947 * 2 1 4 4 C 1.46493 * 120.00364 * 94.98118 * 3 2 1 5 5 C 1.52998 * 109.47330 * 269.99707 * 4 3 2 6 6 C 1.50696 * 109.47534 * 179.97438 * 5 4 3 7 7 O 1.21285 * 120.00115 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00419 * 179.97438 * 6 5 4 9 9 C 1.46494 * 120.00136 * 180.02562 * 8 6 5 10 10 C 1.34780 * 119.99885 * 274.97755 * 3 2 1 11 11 O 1.21352 * 119.99933 * 174.78668 * 10 3 2 12 12 C 1.49455 * 119.99789 * 354.78916 * 10 3 2 13 13 O 1.21342 * 120.00147 * 85.27558 * 12 10 3 14 14 N 1.34777 * 119.99608 * 265.27147 * 12 10 3 15 15 C 1.46924 * 120.63444 * 354.58577 * 14 12 10 16 16 C 1.53627 * 108.54133 * 126.36735 * 15 14 12 17 17 C 1.53037 * 109.24354 * 54.86262 * 16 15 14 18 18 C 1.53048 * 109.53446 * 298.51076 * 17 16 15 19 19 H 1.09000 * 109.49445 * 301.40975 * 18 17 16 20 20 C 1.50702 * 109.52275 * 181.33076 * 18 17 16 21 21 H 1.08000 * 120.00168 * 0.14825 * 20 18 17 22 22 C 1.37880 * 119.99811 * 180.14127 * 20 18 17 23 23 N 1.31516 * 119.99881 * 0.02562 * 22 20 18 24 24 Si 1.86794 * 119.99615 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47391 * 60.00535 * 24 22 20 26 26 H 1.48502 * 109.46885 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47739 * 300.00252 * 24 22 20 28 28 C 1.46930 * 120.62721 * 174.87142 * 14 12 10 29 29 H 1.09003 * 109.47034 * 60.00652 * 1 2 3 30 30 H 1.08996 * 109.47205 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47375 * 300.00226 * 1 2 3 32 32 H 1.09002 * 109.47375 * 239.99774 * 2 1 3 33 33 H 1.08998 * 109.47010 * 119.99815 * 2 1 3 34 34 H 1.09003 * 109.47619 * 149.99789 * 4 3 2 35 35 H 1.09002 * 109.47315 * 30.00012 * 4 3 2 36 36 H 1.08999 * 109.46963 * 59.99965 * 5 4 3 37 37 H 1.08999 * 109.47423 * 299.99934 * 5 4 3 38 38 H 0.97001 * 119.99799 * 359.73136 * 8 6 5 39 39 H 1.09001 * 109.47088 * 59.72725 * 9 8 6 40 40 H 1.09002 * 109.47240 * 179.72452 * 9 8 6 41 41 H 1.08997 * 109.47675 * 299.73057 * 9 8 6 42 42 H 1.08996 * 109.59314 * 246.20096 * 15 14 12 43 43 H 1.09006 * 109.58339 * 6.63066 * 15 14 12 44 44 H 1.08994 * 109.63687 * 294.86456 * 16 15 14 45 45 H 1.09006 * 109.43230 * 174.72542 * 16 15 14 46 46 H 1.08996 * 109.46301 * 178.49158 * 17 16 15 47 47 H 1.09000 * 109.44779 * 58.51627 * 17 16 15 48 48 H 0.96995 * 119.99508 * 179.97438 * 23 22 20 49 49 H 1.08993 * 109.58540 * 353.36729 * 28 14 12 50 50 H 1.08995 * 109.58999 * 113.79986 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3663 2.0352 1.2638 5 6 1.1326 2.7419 1.8291 6 6 1.4904 3.4141 3.1295 7 8 2.6210 3.3360 3.5615 8 7 0.5543 4.1029 3.8120 9 6 0.9023 4.7568 5.0759 10 6 2.1474 2.0503 -1.1628 11 8 2.4607 3.2227 -1.1567 12 6 1.9046 1.3484 -2.4598 13 8 0.7774 1.2604 -2.9003 14 7 2.9377 0.8132 -3.1400 15 6 4.3194 1.0129 -2.6820 16 6 4.9920 -0.3614 -2.5448 17 6 4.8728 -1.1159 -3.8709 18 6 3.3952 -1.3344 -4.2044 19 1 2.9199 -1.8959 -3.4001 20 6 3.2786 -2.1059 -5.4937 21 1 4.1692 -2.4126 -6.0219 22 6 2.0347 -2.4203 -5.9988 23 7 0.9502 -2.0465 -5.3557 24 14 1.8903 -3.3760 -7.5973 25 1 2.5606 -4.6928 -7.4491 26 1 0.4561 -3.5839 -7.9218 27 1 2.5391 -2.6107 -8.6921 28 6 2.7040 0.0243 -4.3573 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.1557 2.7663 1.0894 35 1 2.7148 1.2872 1.9761 36 1 0.3432 2.0108 2.0036 37 1 0.7841 3.4899 1.1169 38 1 -0.3488 4.1692 3.4642 39 1 1.6954 5.4841 4.9023 40 1 0.0248 5.2647 5.4759 41 1 1.2459 4.0082 5.7898 42 1 4.8617 1.6172 -3.4091 43 1 4.3147 1.5171 -1.7156 44 1 4.5017 -0.9321 -1.7562 45 1 6.0448 -0.2268 -2.2963 46 1 5.3723 -2.0810 -3.7859 47 1 5.3416 -0.5329 -4.6636 48 1 0.0752 -2.2674 -5.7113 49 1 1.6333 -0.1241 -4.4966 50 1 3.1173 0.5496 -5.2182 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345849336.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:09 Heat of formation + Delta-G solvation = -133.963435 kcal Electronic energy + Delta-G solvation = -31187.910885 eV Core-core repulsion = 27021.025103 eV Total energy + Delta-G solvation = -4166.885782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.11199 -40.77229 -39.92295 -38.40308 -37.49269 -35.61669 -35.31446 -33.55028 -33.24838 -31.64719 -31.15903 -28.48163 -27.37060 -26.80348 -25.35090 -24.43845 -23.55049 -23.03966 -21.45110 -20.96112 -19.82340 -18.97784 -18.49033 -18.18087 -17.89810 -17.44260 -16.99651 -16.71709 -16.52891 -16.01252 -15.80056 -15.69397 -15.26035 -15.09073 -14.91588 -14.62482 -14.58048 -14.42107 -14.34747 -13.95432 -13.90557 -13.64511 -13.56348 -13.32067 -13.06217 -12.86482 -12.85185 -12.73411 -12.61177 -12.31374 -12.26309 -12.19544 -11.85935 -11.83323 -11.66389 -11.12289 -11.06622 -10.95722 -10.57008 -10.47584 -10.13973 -10.05099 -9.60646 -8.09918 -6.24901 0.94605 1.03850 1.44206 1.45275 1.52726 1.54348 1.57999 2.19837 2.41539 2.45891 3.09117 3.20005 3.73217 3.84581 3.91617 3.94512 4.05150 4.07601 4.24809 4.27474 4.38117 4.46718 4.52705 4.54423 4.61276 4.66433 4.69532 4.70646 4.74409 4.79128 4.89639 4.95665 5.00092 5.07530 5.18764 5.23731 5.26019 5.31717 5.36788 5.42971 5.44585 5.60469 5.87712 5.89791 5.96342 6.31147 6.34978 6.49491 6.60206 6.82371 6.90873 7.20884 7.44738 8.93635 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022108 B = 0.002690 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.215800 B =10407.329360 C =10919.223491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.098 3.902 3 N -0.582 5.582 4 C 0.132 3.868 5 C -0.153 4.153 6 C 0.518 3.482 7 O -0.580 6.580 8 N -0.726 5.726 9 C 0.083 3.917 10 C 0.527 3.473 11 O -0.543 6.543 12 C 0.501 3.499 13 O -0.553 6.553 14 N -0.588 5.588 15 C 0.103 3.897 16 C -0.120 4.120 17 C -0.106 4.106 18 C 0.043 3.957 19 H 0.000 1.000 20 C -0.534 4.534 21 H 0.062 0.938 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 0.953 3.047 25 H -0.268 1.268 26 H -0.290 1.290 27 H -0.271 1.271 28 C 0.124 3.876 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.128 0.872 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.418 0.582 39 H 0.047 0.953 40 H 0.109 0.891 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.103 0.897 46 H 0.060 0.940 47 H 0.055 0.945 48 H 0.261 0.739 49 H 0.085 0.915 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.334 7.772 19.822 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.024 4.024 3 N -0.315 5.315 4 C 0.010 3.990 5 C -0.194 4.194 6 C 0.305 3.695 7 O -0.461 6.461 8 N -0.378 5.378 9 C -0.061 4.061 10 C 0.310 3.690 11 O -0.420 6.420 12 C 0.283 3.717 13 O -0.431 6.431 14 N -0.320 5.320 15 C -0.019 4.019 16 C -0.158 4.158 17 C -0.144 4.144 18 C 0.024 3.976 19 H 0.019 0.981 20 C -0.573 4.573 21 H 0.080 0.920 22 C -0.186 4.186 23 N -0.550 5.550 24 Si 0.779 3.221 25 H -0.193 1.193 26 H -0.215 1.215 27 H -0.197 1.197 28 C 0.002 3.998 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.146 0.854 34 H 0.093 0.907 35 H 0.131 0.869 36 H 0.143 0.857 37 H 0.111 0.889 38 H 0.254 0.746 39 H 0.065 0.935 40 H 0.127 0.873 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.121 0.879 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.103 0.897 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.522 8.279 19.913 21.572 hybrid contribution -0.987 -0.353 -1.502 1.832 sum -0.465 7.926 18.411 20.050 Atomic orbital electron populations 1.22240 0.94687 1.03455 1.02421 1.21910 0.95687 0.80193 1.04599 1.48057 1.63426 1.14858 1.05158 1.21367 0.96376 0.98278 0.82973 1.22034 1.01064 1.01970 0.94289 1.20694 0.84707 0.78284 0.85838 1.90705 1.22161 1.62519 1.70668 1.45794 1.14328 1.53247 1.24421 1.21672 1.02628 0.97214 0.84570 1.20171 0.76827 0.86827 0.85207 1.90746 1.48083 1.15997 1.87219 1.20548 0.85527 0.79298 0.86314 1.90767 1.23549 1.58822 1.69939 1.48573 1.06809 1.49429 1.27237 1.22080 0.80681 0.98906 1.00228 1.21959 1.01657 0.94193 0.98005 1.21540 0.96755 0.99691 0.96410 1.18886 0.92306 0.90915 0.95483 0.98135 1.21452 0.92371 1.35146 1.08295 0.91991 1.25805 0.95795 0.96649 1.00314 1.70021 0.98002 1.46760 1.40242 0.85682 0.76720 0.79453 0.80245 1.19317 1.21546 1.19664 1.21973 1.03979 0.91394 0.82412 0.94669 0.90329 0.89690 0.92515 0.85410 0.90722 0.86877 0.85740 0.88862 0.74558 0.93466 0.87284 0.92774 0.90040 0.89963 0.91879 0.87905 0.92153 0.92656 0.93035 0.89702 0.94327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 10.20 71.98 0.73 -3.24 16 2 C 0.10 2.30 5.98 86.38 0.52 2.82 16 3 N -0.58 -15.05 2.48 -823.40 -2.04 -17.10 16 4 C 0.13 2.80 4.70 86.38 0.41 3.21 16 5 C -0.15 -2.63 6.02 29.85 0.18 -2.45 16 6 C 0.52 9.83 7.83 87.66 0.69 10.52 16 7 O -0.58 -15.62 15.98 -3.05 -0.05 -15.67 16 8 N -0.73 -8.90 5.71 -484.53 -2.77 -11.66 16 9 C 0.08 0.86 10.70 127.77 1.37 2.23 16 10 C 0.53 18.33 5.43 87.27 0.47 18.80 16 11 O -0.54 -20.87 16.70 -3.25 -0.05 -20.93 16 12 C 0.50 20.99 5.68 87.27 0.50 21.49 16 13 O -0.55 -27.44 15.33 -3.22 -0.05 -27.49 16 14 N -0.59 -23.85 2.97 -819.64 -2.43 -26.28 16 15 C 0.10 3.23 6.39 86.51 0.55 3.78 16 16 C -0.12 -3.44 6.10 30.82 0.19 -3.26 16 17 C -0.11 -3.88 5.11 30.62 0.16 -3.72 16 18 C 0.04 2.05 2.25 -11.46 -0.03 2.03 16 19 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 20 C -0.53 -28.06 8.57 25.60 0.22 -27.85 16 21 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 22 C 0.01 0.77 5.30 84.66 0.45 1.22 16 23 N -0.91 -52.69 11.39 21.45 0.24 -52.44 16 24 Si 0.95 42.86 29.54 68.60 2.03 44.88 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 28 C 0.12 5.98 5.38 86.36 0.46 6.45 16 29 H 0.03 1.11 6.89 -2.39 -0.02 1.10 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 1.41 6.62 -2.39 -0.02 1.39 16 32 H 0.06 1.72 6.98 -2.39 -0.02 1.70 16 33 H 0.13 1.97 7.84 -2.39 -0.02 1.95 16 34 H 0.07 1.92 7.46 -2.39 -0.02 1.90 16 35 H 0.11 1.94 7.82 -2.39 -0.02 1.92 16 36 H 0.12 1.48 6.62 -2.39 -0.02 1.46 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.42 2.61 8.83 -92.71 -0.82 1.79 16 39 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.08 2.36 6.29 -2.38 -0.01 2.35 16 44 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 46 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.05 1.97 8.14 -2.39 -0.02 1.96 16 48 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 49 H 0.08 4.85 5.15 -2.39 -0.01 4.84 16 50 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -76.19 401.30 1.87 -74.33 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.13 Total: 20.34 kcal Atomic # 6 Polarization: 25.16 SS G_CDS: 6.86 Total: 32.02 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -7.00 Total: -107.49 kcal Atomic # 8 Polarization: -63.93 SS G_CDS: -0.15 Total: -64.09 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -76.19 1.87 -74.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345849336.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.638 kcal (2) G-P(sol) polarization free energy of solvation -76.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds