Wall clock time and date at job start Tue Mar 31 2020 22:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47261 * 2 1 4 4 C 1.50696 * 109.47055 * 240.00052 * 2 1 3 5 5 O 1.21234 * 119.99795 * 239.99998 * 4 2 1 6 6 N 1.34777 * 120.00141 * 60.00303 * 4 2 1 7 7 C 1.34774 * 119.99906 * 180.02562 * 6 4 2 8 8 O 1.21543 * 119.99987 * 359.97438 * 7 6 4 9 9 N 1.34777 * 119.99902 * 179.97438 * 7 6 4 10 10 C 1.46506 * 119.99873 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47262 * 275.00296 * 10 9 7 12 12 C 1.52996 * 109.47019 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47270 * 59.99765 * 12 11 10 14 14 C 1.52998 * 109.47292 * 300.00068 * 13 12 11 15 15 C 1.52996 * 109.47048 * 60.00174 * 14 13 12 16 16 N 1.46896 * 109.47188 * 119.99652 * 2 1 3 17 17 C 1.47480 * 111.00629 * 199.02785 * 16 2 1 18 18 C 1.53509 * 87.93509 * 138.70688 * 17 16 2 19 19 O 1.42900 * 114.17317 * 87.62328 * 18 17 16 20 20 C 1.50703 * 114.17018 * 220.33401 * 18 17 16 21 21 H 1.07993 * 120.00086 * 93.83724 * 20 18 17 22 22 C 1.37879 * 119.99463 * 273.83960 * 20 18 17 23 23 N 1.31510 * 120.00273 * 0.02562 * 22 20 18 24 24 Si 1.86806 * 119.99498 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47170 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.46816 * 119.99994 * 24 22 20 27 27 H 1.48497 * 109.46974 * 239.99720 * 24 22 20 28 28 C 1.47482 * 111.00542 * 295.00113 * 16 2 1 29 29 H 1.08988 * 109.47545 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00172 * 1 2 3 31 31 H 1.08998 * 109.47076 * 59.99527 * 1 2 3 32 32 H 0.96999 * 120.00043 * 359.97438 * 6 4 2 33 33 H 0.96995 * 120.00018 * 0.27633 * 9 7 6 34 34 H 1.09000 * 109.47131 * 35.00870 * 10 9 7 35 35 H 1.09002 * 109.46901 * 299.99917 * 11 10 9 36 36 H 1.09001 * 109.47093 * 60.00233 * 11 10 9 37 37 H 1.09002 * 109.46968 * 299.99571 * 12 11 10 38 38 H 1.09007 * 109.47060 * 179.97438 * 12 11 10 39 39 H 1.09002 * 109.46987 * 180.02562 * 13 12 11 40 40 H 1.09007 * 109.46959 * 60.00323 * 13 12 11 41 41 H 1.08994 * 109.47090 * 299.99882 * 14 13 12 42 42 H 1.09001 * 109.47093 * 179.97438 * 14 13 12 43 43 H 1.08997 * 109.47261 * 180.02562 * 15 14 13 44 44 H 1.08994 * 109.47414 * 59.99906 * 15 14 13 45 45 H 1.09002 * 113.47616 * 253.47816 * 17 16 2 46 46 H 1.09000 * 113.47279 * 23.93826 * 17 16 2 47 47 H 0.96696 * 113.99593 * 86.15431 * 19 18 17 48 48 H 0.96999 * 120.00080 * 180.02562 * 23 22 20 49 49 H 1.09004 * 113.46961 * 336.06171 * 28 16 2 50 50 H 1.09001 * 113.47308 * 106.52124 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7293 -1.6961 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 2.1556 -0.8856 -3.5550 8 8 2.8543 -1.8738 -3.4434 9 7 1.8296 -0.4254 -4.7791 10 6 2.3180 -1.1160 -5.9753 11 6 3.7203 -0.6103 -6.3194 12 6 4.2300 -1.3312 -7.5689 13 6 3.2856 -1.0519 -8.7398 14 6 1.8832 -1.5576 -8.3956 15 6 1.3735 -0.8367 -7.1461 16 7 2.0196 -0.6924 1.1994 17 6 3.4230 -0.3359 1.4798 18 6 3.0496 -0.2644 2.9670 19 8 3.1499 -1.5122 3.6562 20 6 3.6876 0.8817 3.7090 21 1 3.1575 1.8162 3.8181 22 6 4.9482 0.7371 4.2484 23 7 5.5940 -0.4008 4.1151 24 14 5.7388 2.1575 5.1687 25 1 4.8126 3.3182 5.1777 26 1 6.0274 1.7430 6.5652 27 1 7.0052 2.5406 4.4944 28 6 1.6473 0.0421 2.4229 29 1 -0.3634 -1.0275 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.1488 0.5386 -2.5436 33 1 1.2753 0.3656 -4.8681 34 1 2.3549 -2.1888 -5.7858 35 1 3.6833 0.4625 -6.5089 36 1 4.3931 -0.8089 -5.4851 37 1 4.2670 -2.4040 -7.3798 38 1 5.2290 -0.9705 -7.8144 39 1 3.6485 -1.5658 -9.6299 40 1 3.2487 0.0210 -8.9289 41 1 1.9201 -2.6304 -8.2066 42 1 1.2103 -1.3582 -9.2296 43 1 0.3746 -1.1973 -6.9007 44 1 1.3366 0.2361 -7.3352 45 1 4.1284 -1.1336 1.2470 46 1 3.7190 0.6253 1.0597 47 1 4.0343 -1.7027 3.9978 48 1 6.4807 -0.5026 4.4949 49 1 1.4694 1.1043 2.2544 50 1 0.8477 -0.4352 2.9895 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364387537.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:50 Heat of formation + Delta-G solvation = -84.919007 kcal Electronic energy + Delta-G solvation = -30245.118861 eV Core-core repulsion = 26080.359805 eV Total energy + Delta-G solvation = -4164.759056 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.19416 -39.72319 -38.84074 -37.46479 -34.73957 -34.42358 -34.12500 -32.08589 -31.65834 -31.13858 -29.53604 -27.11056 -25.62130 -24.30337 -24.02585 -23.03320 -22.42657 -20.98117 -20.39291 -20.08335 -18.74299 -18.66233 -17.31786 -16.98196 -16.17056 -15.91877 -15.39654 -15.23418 -14.97350 -14.81001 -14.63948 -14.38947 -14.31454 -14.07070 -13.72870 -13.49856 -13.21372 -13.00424 -12.73757 -12.56153 -12.34118 -12.00133 -11.88746 -11.69482 -11.63195 -11.53174 -11.46884 -11.16904 -11.05291 -10.83967 -10.82717 -10.71816 -10.67167 -10.56278 -10.34582 -9.99003 -9.94717 -9.32899 -9.26250 -9.20011 -8.63871 -8.18985 -7.87936 -6.25151 -4.35801 2.29335 2.32291 3.19119 3.27735 3.30717 3.37444 3.76525 4.25149 4.28833 4.37030 4.55607 4.65570 4.72106 4.76349 4.87386 4.99733 5.05753 5.10236 5.11090 5.12016 5.24329 5.30560 5.38956 5.54521 5.61663 5.67093 5.70110 5.73807 5.77501 5.86916 5.90494 5.96551 6.02422 6.04308 6.15003 6.17537 6.28669 6.29156 6.36475 6.55272 6.68159 7.06194 7.21497 7.34677 7.48525 7.77885 7.89468 8.01121 8.28013 8.40262 8.66536 9.34415 9.72758 10.80921 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019263 B = 0.002227 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.232048 B =12568.140265 C =13258.393768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.029 3.971 3 H 0.073 0.927 4 C 0.519 3.481 5 O -0.437 6.437 6 N -0.695 5.695 7 C 0.693 3.307 8 O -0.529 6.529 9 N -0.739 5.739 10 C 0.161 3.839 11 C -0.132 4.132 12 C -0.118 4.118 13 C -0.122 4.122 14 C -0.116 4.116 15 C -0.125 4.125 16 N -0.447 5.447 17 C -0.017 4.017 18 C 0.248 3.752 19 O -0.569 6.569 20 C -0.535 4.535 21 H 0.067 0.933 22 C 0.070 3.930 23 N -0.894 5.894 24 Si 0.904 3.096 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.006 3.994 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.405 0.595 33 H 0.395 0.605 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.056 0.944 47 H 0.391 0.609 48 H 0.272 0.728 49 H 0.065 0.935 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.113 5.186 -23.951 26.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 H 0.091 0.909 4 C 0.304 3.696 5 O -0.301 6.301 6 N -0.362 5.362 7 C 0.393 3.607 8 O -0.400 6.400 9 N -0.396 5.396 10 C 0.057 3.943 11 C -0.171 4.171 12 C -0.156 4.156 13 C -0.159 4.159 14 C -0.154 4.154 15 C -0.163 4.163 16 N -0.171 5.171 17 C -0.146 4.146 18 C 0.206 3.794 19 O -0.381 6.381 20 C -0.574 4.574 21 H 0.085 0.915 22 C -0.132 4.132 23 N -0.535 5.535 24 Si 0.732 3.268 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.208 1.208 28 C -0.122 4.122 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.239 0.761 33 H 0.229 0.771 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.247 0.753 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.665 2.757 -23.952 25.975 hybrid contribution 0.712 2.652 0.321 2.765 sum -8.953 5.409 -23.631 25.842 Atomic orbital electron populations 1.21768 0.92344 1.03376 1.02272 1.22303 0.97288 0.96913 0.91918 0.90898 1.20928 0.80476 0.85231 0.82993 1.90841 1.31256 1.22723 1.85264 1.44341 1.52951 1.32248 1.06666 1.16201 0.80753 0.83315 0.80399 1.91078 1.38591 1.25189 1.85149 1.45369 1.56787 1.33150 1.04300 1.20897 0.93048 0.97941 0.82458 1.21961 0.96604 1.00123 0.98399 1.21501 0.98792 1.01026 0.94263 1.21582 0.95025 1.01230 0.98074 1.21481 0.96663 1.00432 0.96817 1.21808 0.98816 1.01295 0.94413 1.69066 1.07755 1.42124 0.98126 1.24719 0.89505 0.98750 1.01622 1.19338 0.89086 0.83934 0.87004 1.86031 1.38720 1.38130 1.75206 1.21579 1.01151 0.98842 1.35794 0.91454 1.25092 0.96695 0.96342 0.95116 1.69314 1.14234 1.24615 1.45316 0.86343 0.79088 0.81891 0.79506 1.19597 1.20634 1.20791 1.24108 1.00983 0.96096 0.91034 0.91255 0.90848 0.92470 0.76092 0.77110 0.89201 0.91858 0.91116 0.91582 0.91658 0.91841 0.91932 0.91525 0.91489 0.91223 0.91362 0.90673 0.92626 0.75345 0.91795 0.91649 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.07 37.16 0.34 -1.37 16 2 C 0.03 0.47 2.09 -68.87 -0.14 0.32 16 3 H 0.07 1.08 7.56 -51.93 -0.39 0.69 16 4 C 0.52 9.17 6.99 -10.99 -0.08 9.09 16 5 O -0.44 -10.32 14.41 -18.21 -0.26 -10.58 16 6 N -0.69 -8.77 5.13 -15.78 -0.08 -8.85 16 7 C 0.69 9.87 8.47 -86.92 -0.74 9.13 16 8 O -0.53 -10.58 14.41 -18.48 -0.27 -10.85 16 9 N -0.74 -6.73 5.08 -58.68 -0.30 -7.03 16 10 C 0.16 1.43 2.46 -67.92 -0.17 1.27 16 11 C -0.13 -1.19 5.49 -26.73 -0.15 -1.34 16 12 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 13 C -0.12 -0.70 5.92 -26.73 -0.16 -0.86 16 14 C -0.12 -0.64 5.92 -26.73 -0.16 -0.80 16 15 C -0.13 -0.73 5.39 -26.73 -0.14 -0.87 16 16 N -0.45 -9.62 5.73 -238.00 -1.36 -10.98 16 17 C -0.02 -0.41 6.47 -7.55 -0.05 -0.46 16 18 C 0.25 6.40 1.57 -91.24 -0.14 6.25 16 19 O -0.57 -15.97 13.54 -35.23 -0.48 -16.45 16 20 C -0.54 -14.22 8.69 -34.44 -0.30 -14.52 16 21 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 22 C 0.07 1.86 5.40 -17.82 -0.10 1.76 16 23 N -0.89 -24.59 11.02 55.43 0.61 -23.98 16 24 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 C 0.01 0.13 5.98 -7.55 -0.05 0.09 16 29 H 0.07 0.93 8.14 -51.94 -0.42 0.51 16 30 H 0.07 0.86 7.34 -51.93 -0.38 0.48 16 31 H 0.06 0.47 7.56 -51.93 -0.39 0.07 16 32 H 0.40 3.02 8.13 -40.82 -0.33 2.69 16 33 H 0.40 2.13 8.62 -40.82 -0.35 1.78 16 34 H 0.09 1.03 7.58 -51.93 -0.39 0.63 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 2.06 8.14 -51.93 -0.42 1.64 16 46 H 0.06 1.30 7.58 -51.93 -0.39 0.91 16 47 H 0.39 11.19 6.34 45.56 0.29 11.48 16 48 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.07 1.24 7.79 -51.93 -0.40 0.83 16 50 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 396.45 15.07 5.97 5.97 Total: -1.00 -35.90 396.45 -11.16 -47.07 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -7.79 Total: 13.67 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -2.19 Total: 6.66 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -1.13 Total: -50.84 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -1.01 Total: -37.89 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.90 -11.16 -47.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364387537.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.853 kcal (2) G-P(sol) polarization free energy of solvation -35.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds