Wall clock time and date at job start Tue Mar 31 2020 22:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47261 * 2 1 4 4 C 1.50696 * 109.47055 * 240.00052 * 2 1 3 5 5 O 1.21234 * 119.99795 * 239.99998 * 4 2 1 6 6 N 1.34777 * 120.00141 * 60.00303 * 4 2 1 7 7 C 1.34774 * 119.99906 * 180.02562 * 6 4 2 8 8 O 1.21543 * 119.99987 * 359.97438 * 7 6 4 9 9 N 1.34777 * 119.99902 * 179.97438 * 7 6 4 10 10 C 1.46506 * 119.99873 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47262 * 275.00296 * 10 9 7 12 12 C 1.52996 * 109.47019 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47270 * 59.99765 * 12 11 10 14 14 C 1.52998 * 109.47292 * 300.00068 * 13 12 11 15 15 C 1.52996 * 109.47048 * 60.00174 * 14 13 12 16 16 N 1.46896 * 109.47188 * 119.99652 * 2 1 3 17 17 C 1.47480 * 111.00629 * 199.02785 * 16 2 1 18 18 C 1.53509 * 87.93509 * 138.70688 * 17 16 2 19 19 O 1.42900 * 114.17317 * 87.62328 * 18 17 16 20 20 C 1.50703 * 114.17018 * 220.33401 * 18 17 16 21 21 H 1.07993 * 120.00086 * 93.83724 * 20 18 17 22 22 C 1.37879 * 119.99463 * 273.83960 * 20 18 17 23 23 N 1.31510 * 120.00273 * 0.02562 * 22 20 18 24 24 Si 1.86806 * 119.99498 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47170 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.46816 * 119.99994 * 24 22 20 27 27 H 1.48497 * 109.46974 * 239.99720 * 24 22 20 28 28 C 1.47482 * 111.00542 * 295.00113 * 16 2 1 29 29 H 1.08988 * 109.47545 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00172 * 1 2 3 31 31 H 1.08998 * 109.47076 * 59.99527 * 1 2 3 32 32 H 0.96999 * 120.00043 * 359.97438 * 6 4 2 33 33 H 0.96995 * 120.00018 * 0.27633 * 9 7 6 34 34 H 1.09000 * 109.47131 * 35.00870 * 10 9 7 35 35 H 1.09002 * 109.46901 * 299.99917 * 11 10 9 36 36 H 1.09001 * 109.47093 * 60.00233 * 11 10 9 37 37 H 1.09002 * 109.46968 * 299.99571 * 12 11 10 38 38 H 1.09007 * 109.47060 * 179.97438 * 12 11 10 39 39 H 1.09002 * 109.46987 * 180.02562 * 13 12 11 40 40 H 1.09007 * 109.46959 * 60.00323 * 13 12 11 41 41 H 1.08994 * 109.47090 * 299.99882 * 14 13 12 42 42 H 1.09001 * 109.47093 * 179.97438 * 14 13 12 43 43 H 1.08997 * 109.47261 * 180.02562 * 15 14 13 44 44 H 1.08994 * 109.47414 * 59.99906 * 15 14 13 45 45 H 1.09002 * 113.47616 * 253.47816 * 17 16 2 46 46 H 1.09000 * 113.47279 * 23.93826 * 17 16 2 47 47 H 0.96696 * 113.99593 * 86.15431 * 19 18 17 48 48 H 0.96999 * 120.00080 * 180.02562 * 23 22 20 49 49 H 1.09004 * 113.46961 * 336.06171 * 28 16 2 50 50 H 1.09001 * 113.47308 * 106.52124 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7293 -1.6961 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 2.1556 -0.8856 -3.5550 8 8 2.8543 -1.8738 -3.4434 9 7 1.8296 -0.4254 -4.7791 10 6 2.3180 -1.1160 -5.9753 11 6 3.7203 -0.6103 -6.3194 12 6 4.2300 -1.3312 -7.5689 13 6 3.2856 -1.0519 -8.7398 14 6 1.8832 -1.5576 -8.3956 15 6 1.3735 -0.8367 -7.1461 16 7 2.0196 -0.6924 1.1994 17 6 3.4230 -0.3359 1.4798 18 6 3.0496 -0.2644 2.9670 19 8 3.1499 -1.5122 3.6562 20 6 3.6876 0.8817 3.7090 21 1 3.1575 1.8162 3.8181 22 6 4.9482 0.7371 4.2484 23 7 5.5940 -0.4008 4.1151 24 14 5.7388 2.1575 5.1687 25 1 4.8126 3.3182 5.1777 26 1 6.0274 1.7430 6.5652 27 1 7.0052 2.5406 4.4944 28 6 1.6473 0.0421 2.4229 29 1 -0.3634 -1.0275 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.1488 0.5386 -2.5436 33 1 1.2753 0.3656 -4.8681 34 1 2.3549 -2.1888 -5.7858 35 1 3.6833 0.4625 -6.5089 36 1 4.3931 -0.8089 -5.4851 37 1 4.2670 -2.4040 -7.3798 38 1 5.2290 -0.9705 -7.8144 39 1 3.6485 -1.5658 -9.6299 40 1 3.2487 0.0210 -8.9289 41 1 1.9201 -2.6304 -8.2066 42 1 1.2103 -1.3582 -9.2296 43 1 0.3746 -1.1973 -6.9007 44 1 1.3366 0.2361 -7.3352 45 1 4.1284 -1.1336 1.2470 46 1 3.7190 0.6253 1.0597 47 1 4.0343 -1.7027 3.9978 48 1 6.4807 -0.5026 4.4949 49 1 1.4694 1.1043 2.2544 50 1 0.8477 -0.4352 2.9895 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364387537.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:50 Heat of formation + Delta-G solvation = -114.895266 kcal Electronic energy + Delta-G solvation = -30246.418729 eV Core-core repulsion = 26080.359805 eV Total energy + Delta-G solvation = -4166.058924 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.45364 -41.17227 -39.95532 -38.66840 -36.46345 -35.88115 -35.10167 -34.11323 -33.13939 -31.70948 -30.29206 -28.90368 -27.20539 -25.91158 -25.47950 -23.66605 -23.35984 -22.09462 -21.47867 -21.00895 -20.55359 -19.82793 -19.09427 -18.33118 -17.22861 -17.12122 -17.05069 -16.71452 -16.47711 -15.96445 -15.88786 -15.51428 -15.34871 -15.27299 -15.01046 -14.83803 -14.41635 -13.92255 -13.85812 -13.70430 -13.48319 -13.42748 -13.21463 -13.14759 -13.00353 -12.88249 -12.56652 -12.41353 -12.30350 -12.22471 -12.11540 -12.02424 -11.92427 -11.51563 -11.39942 -11.31909 -11.20307 -11.13079 -10.68344 -10.64196 -10.14373 -10.08919 -9.66592 -8.24700 -6.43725 0.99251 1.21555 1.42323 1.44490 1.56622 2.17619 2.37118 2.77459 2.95192 3.18504 3.57399 3.69049 3.79370 3.86346 3.95846 3.99934 4.10851 4.19837 4.22285 4.28756 4.39415 4.40501 4.50510 4.52511 4.55161 4.68616 4.76991 4.83974 4.86620 4.91058 4.93425 5.09637 5.10603 5.14875 5.18577 5.20256 5.21221 5.31112 5.34674 5.36626 5.41574 5.42193 5.49552 5.58175 5.75105 5.94624 6.24349 6.58367 6.64691 7.09891 7.30085 7.32830 7.53600 8.81058 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019263 B = 0.002227 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.232048 B =12568.140265 C =13258.393768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.027 3.973 3 H 0.101 0.899 4 C 0.522 3.478 5 O -0.509 6.509 6 N -0.670 5.670 7 C 0.688 3.312 8 O -0.592 6.592 9 N -0.711 5.711 10 C 0.158 3.842 11 C -0.129 4.129 12 C -0.118 4.118 13 C -0.117 4.117 14 C -0.117 4.117 15 C -0.114 4.114 16 N -0.467 5.467 17 C -0.005 4.005 18 C 0.214 3.786 19 O -0.586 6.586 20 C -0.550 4.550 21 H 0.078 0.922 22 C 0.017 3.983 23 N -0.926 5.926 24 Si 0.975 3.025 25 H -0.257 1.257 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.027 3.973 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.433 0.567 33 H 0.419 0.581 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.029 0.971 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.026 0.974 46 H 0.062 0.938 47 H 0.382 0.618 48 H 0.272 0.728 49 H 0.097 0.903 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.780 8.950 -25.940 30.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.086 4.086 3 H 0.118 0.882 4 C 0.308 3.692 5 O -0.378 6.378 6 N -0.339 5.339 7 C 0.389 3.611 8 O -0.468 6.468 9 N -0.368 5.368 10 C 0.053 3.947 11 C -0.167 4.167 12 C -0.157 4.157 13 C -0.154 4.154 14 C -0.155 4.155 15 C -0.152 4.152 16 N -0.191 5.191 17 C -0.135 4.135 18 C 0.173 3.827 19 O -0.398 6.398 20 C -0.588 4.588 21 H 0.097 0.903 22 C -0.182 4.182 23 N -0.568 5.568 24 Si 0.799 3.201 25 H -0.181 1.181 26 H -0.206 1.206 27 H -0.208 1.208 28 C -0.101 4.101 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.126 0.874 32 H 0.273 0.727 33 H 0.257 0.743 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.045 0.955 46 H 0.080 0.920 47 H 0.237 0.763 48 H 0.082 0.918 49 H 0.115 0.885 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.429 6.620 -26.005 29.573 hybrid contribution 1.526 1.458 0.835 2.270 sum -10.903 8.079 -25.170 28.595 Atomic orbital electron populations 1.21826 0.88495 1.03362 1.05397 1.22487 1.00122 0.97063 0.88898 0.88196 1.21311 0.79051 0.84159 0.84654 1.90833 1.34570 1.26001 1.86379 1.43895 1.52420 1.32642 1.04915 1.16476 0.80197 0.82709 0.81741 1.91055 1.41421 1.28186 1.86088 1.45165 1.55730 1.33344 1.02570 1.21003 0.94197 0.96146 0.83310 1.21913 0.95808 1.01409 0.97603 1.21509 0.99697 0.99862 0.94586 1.21560 0.94531 1.02178 0.97122 1.21515 0.96906 0.99761 0.97291 1.21774 0.97973 1.02869 0.92627 1.68882 1.05624 1.44003 1.00553 1.24432 0.90619 0.97184 1.01276 1.19839 0.92629 0.82982 0.87225 1.86011 1.38172 1.39881 1.75693 1.21901 1.01545 0.99368 1.35948 0.90345 1.25983 0.97340 0.98825 0.96020 1.69430 1.14524 1.26575 1.46225 0.85255 0.78069 0.78970 0.77789 1.18101 1.20636 1.20787 1.23971 0.98143 0.97812 0.90200 0.92868 0.89674 0.87422 0.72696 0.74255 0.92530 0.89962 0.95220 0.93182 0.91400 0.91053 0.90590 0.92670 0.89405 0.90384 0.88959 0.95519 0.91957 0.76345 0.91775 0.88504 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.07 71.98 0.65 -2.09 16 2 C 0.03 0.82 2.09 44.17 0.09 0.92 16 3 H 0.10 2.59 7.56 -2.38 -0.02 2.57 16 4 C 0.52 18.35 6.99 87.66 0.61 18.97 16 5 O -0.51 -25.36 14.41 19.87 0.29 -25.07 16 6 N -0.67 -15.84 5.13 -440.53 -2.26 -18.10 16 7 C 0.69 19.53 8.47 179.06 1.52 21.05 16 8 O -0.59 -25.15 14.41 18.91 0.27 -24.88 16 9 N -0.71 -11.78 5.08 -457.84 -2.33 -14.11 16 10 C 0.16 2.71 2.46 44.99 0.11 2.82 16 11 C -0.13 -2.31 5.49 30.59 0.17 -2.14 16 12 C -0.12 -1.77 5.92 30.59 0.18 -1.58 16 13 C -0.12 -1.09 5.92 30.59 0.18 -0.91 16 14 C -0.12 -1.00 5.92 30.59 0.18 -0.82 16 15 C -0.11 -1.00 5.39 30.60 0.16 -0.83 16 16 N -0.47 -20.10 5.73 -907.27 -5.19 -25.29 16 17 C -0.01 -0.27 6.47 83.57 0.54 0.27 16 18 C 0.21 11.23 1.57 -11.20 -0.02 11.21 16 19 O -0.59 -34.34 13.54 -148.98 -2.02 -36.36 16 20 C -0.55 -29.12 8.69 25.60 0.22 -28.90 16 21 H 0.08 3.87 7.81 -2.91 -0.02 3.85 16 22 C 0.02 0.92 5.40 84.66 0.46 1.38 16 23 N -0.93 -52.62 11.02 21.45 0.24 -52.38 16 24 Si 0.97 41.74 29.54 68.60 2.03 43.76 16 25 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 26 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 27 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 28 C 0.03 1.11 5.98 83.57 0.50 1.61 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.61 7.34 -2.39 -0.02 1.59 16 31 H 0.11 1.13 7.56 -2.39 -0.02 1.11 16 32 H 0.43 4.75 8.13 -92.71 -0.75 4.00 16 33 H 0.42 2.95 8.62 -92.71 -0.80 2.15 16 34 H 0.06 1.38 7.58 -2.39 -0.02 1.36 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 41 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.06 2.96 7.58 -2.39 -0.02 2.94 16 47 H 0.38 23.16 6.34 -74.06 -0.47 22.69 16 48 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 49 H 0.10 3.33 7.79 -2.39 -0.02 3.31 16 50 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -86.93 396.45 -4.47 -91.40 By element: Atomic # 1 Polarization: 41.14 SS G_CDS: -1.06 Total: 40.08 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 5.56 Total: 20.94 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -9.55 Total: -109.88 kcal Atomic # 8 Polarization: -84.85 SS G_CDS: -1.46 Total: -86.31 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Total: -86.93 -4.47 -91.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364387537.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.495 kcal (2) G-P(sol) polarization free energy of solvation -86.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds