Wall clock time and date at job start Tue Mar 31 2020 23:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47131 * 2 1 4 4 C 1.46500 * 119.99922 * 269.99564 * 3 2 1 5 5 C 1.50696 * 109.47405 * 270.00322 * 4 3 2 6 6 H 1.08002 * 120.00172 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99982 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99580 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00041 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46950 * 89.99858 * 9 7 5 11 11 H 1.48493 * 109.47172 * 209.99811 * 9 7 5 12 12 H 1.48503 * 109.47246 * 329.99874 * 9 7 5 13 13 C 1.34778 * 120.00205 * 90.00208 * 3 2 1 14 14 O 1.21274 * 120.00058 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99863 * 359.97438 * 13 3 2 16 16 N 1.46898 * 109.46832 * 180.02562 * 15 13 3 17 17 C 1.47962 * 110.99575 * 190.00008 * 16 15 13 18 18 C 1.53938 * 86.17971 * 222.41588 * 17 16 15 19 19 N 1.46503 * 113.73297 * 138.07869 * 18 17 16 20 20 C 1.34779 * 119.99752 * 156.89993 * 19 18 17 21 21 O 1.21284 * 119.99836 * 0.02562 * 20 19 18 22 22 C 1.50700 * 119.99616 * 179.97438 * 20 19 18 23 23 H 1.08994 * 110.90992 * 62.13759 * 22 20 19 24 24 C 1.55457 * 110.92154 * 185.75287 * 22 20 19 25 25 C 1.54947 * 100.98961 * 152.22952 * 24 22 20 26 26 O 1.43650 * 105.13275 * 323.60678 * 25 24 22 27 27 C 1.43233 * 109.97542 * 24.42908 * 26 25 24 28 28 C 1.48187 * 111.07132 * 90.57020 * 16 15 13 29 29 H 1.09001 * 109.46749 * 300.00262 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00231 * 1 2 3 31 31 H 1.08998 * 109.47043 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46880 * 239.99429 * 2 1 3 33 33 H 1.09001 * 109.47066 * 119.99769 * 2 1 3 34 34 H 1.09003 * 109.46942 * 30.00318 * 4 3 2 35 35 H 1.09002 * 109.47097 * 149.99902 * 4 3 2 36 36 H 0.96999 * 119.99467 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.47010 * 59.99893 * 15 13 3 38 38 H 1.09006 * 109.46646 * 300.00177 * 15 13 3 39 39 H 1.08998 * 113.76116 * 108.10077 * 17 16 15 40 40 H 1.08999 * 113.75987 * 336.73457 * 17 16 15 41 41 H 1.08994 * 113.73582 * 269.25564 * 18 17 16 42 42 H 0.96995 * 120.00159 * 336.90051 * 19 18 17 43 43 H 1.08999 * 111.05650 * 34.31564 * 24 22 20 44 44 H 1.09001 * 111.18400 * 270.19747 * 24 22 20 45 45 H 1.08996 * 110.31348 * 204.69266 * 25 24 22 46 46 H 1.08998 * 110.39377 * 82.56129 * 25 24 22 47 47 H 1.09002 * 109.83312 * 117.80151 * 27 26 25 48 48 H 1.08996 * 109.82720 * 238.68562 * 27 26 25 49 49 H 1.09001 * 113.76310 * 23.23004 * 28 16 15 50 50 H 1.09007 * 113.82238 * 251.80995 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0962 7 6 4.1492 2.3895 -2.8780 8 7 5.3914 2.1832 -3.2573 9 14 3.0129 3.4350 -3.9293 10 1 3.1165 4.8553 -3.5082 11 1 3.4058 3.3118 -5.3560 12 1 1.6132 2.9691 -3.7593 13 6 2.2431 2.0166 1.1672 14 8 2.6478 3.1598 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3092 2.2066 3.5888 17 6 2.3050 1.4768 4.8759 18 6 1.5617 2.6975 5.4478 19 7 0.4580 2.3484 6.3457 20 6 0.0271 3.2385 7.2615 21 8 0.5528 4.3285 7.3419 22 6 -1.1086 2.8795 8.1848 23 1 -0.8444 2.0300 8.8144 24 6 -1.5270 4.1007 9.0510 25 6 -3.0197 3.7789 9.3138 26 8 -3.4924 3.1745 8.0995 27 6 -2.3969 2.5909 7.3846 28 6 1.1173 2.9841 4.0021 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 5.7175 2.5736 -4.0832 37 1 2.6212 0.4186 2.5302 38 1 0.9432 1.0126 2.5298 39 1 3.2981 1.3290 5.3002 40 1 1.7072 0.5654 4.8622 41 1 2.2224 3.4587 5.8627 42 1 0.0374 1.4768 6.2812 43 1 -1.4179 5.0315 8.4943 44 1 -0.9624 4.1346 9.9828 45 1 -3.5734 4.6946 9.5210 46 1 -3.1172 3.0820 10.1462 47 1 -2.5442 1.5145 7.2967 48 1 -2.3237 3.0363 6.3925 49 1 0.1713 2.5146 3.7322 50 1 1.1632 4.0385 3.7294 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001400348409.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:52 Heat of formation + Delta-G solvation = -68.452477 kcal Electronic energy + Delta-G solvation = -29745.687815 eV Core-core repulsion = 25581.642801 eV Total energy + Delta-G solvation = -4164.045013 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.05981 -40.14718 -38.94018 -38.30699 -35.34590 -34.41703 -32.83483 -32.68420 -30.70049 -30.26147 -29.61992 -27.65085 -26.37128 -25.11945 -23.64735 -23.00951 -22.73358 -21.81880 -20.75062 -20.23951 -18.48192 -17.94585 -17.20473 -16.94571 -16.89414 -16.66839 -16.14665 -15.64450 -15.47135 -15.25503 -15.05094 -14.72175 -14.29786 -14.03551 -13.84271 -13.81366 -13.52050 -13.26220 -12.97121 -12.90938 -12.58301 -12.56381 -12.33064 -12.05966 -11.94699 -11.85755 -11.70370 -11.55581 -11.50021 -11.41944 -11.06800 -10.93264 -10.69477 -10.49107 -10.36768 -10.14205 -10.00282 -9.52419 -9.46685 -9.16627 -8.69571 -8.57000 -7.70257 -6.06857 -4.05248 2.14173 2.60266 3.29829 3.31226 3.35636 3.36390 3.38168 3.54439 3.72166 3.94293 4.18423 4.27106 4.35559 4.41109 4.55048 4.56384 4.63374 4.70094 4.88731 4.92138 5.06298 5.08653 5.14441 5.17437 5.18806 5.25879 5.26891 5.34599 5.38290 5.41581 5.49987 5.61390 5.63318 5.65378 5.81926 5.89874 6.07549 6.10543 6.18320 6.33352 6.40105 6.64801 6.81125 6.97249 7.02591 7.37500 7.63322 7.76498 8.27524 8.49305 8.95888 9.04599 9.53603 11.06592 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019993 B = 0.002067 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.183547 B =13540.033640 C =13752.352161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.597 5.597 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.897 5.897 9 Si 0.877 3.123 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.509 3.491 14 O -0.518 6.518 15 C 0.005 3.995 16 N -0.449 5.449 17 C -0.005 4.005 18 C 0.118 3.882 19 N -0.720 5.720 20 C 0.526 3.474 21 O -0.527 6.527 22 C -0.149 4.149 23 H 0.114 0.886 24 C -0.136 4.136 25 C 0.049 3.951 26 O -0.380 6.380 27 C 0.063 3.937 28 C -0.004 4.004 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.028 0.972 35 H 0.035 0.965 36 H 0.264 0.736 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.127 0.873 42 H 0.400 0.600 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.064 0.936 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.071 0.929 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.259 -6.450 24.751 30.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.330 5.330 4 C 0.098 3.902 5 C -0.565 4.565 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.393 6.393 15 C -0.127 4.127 16 N -0.171 5.171 17 C -0.135 4.135 18 C 0.013 3.987 19 N -0.372 5.372 20 C 0.311 3.689 21 O -0.402 6.402 22 C -0.171 4.171 23 H 0.132 0.868 24 C -0.174 4.174 25 C -0.027 4.027 26 O -0.299 6.299 27 C -0.014 4.014 28 C -0.134 4.134 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.145 0.855 42 H 0.235 0.765 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.093 0.907 49 H 0.089 0.911 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.126 -4.653 24.331 29.559 hybrid contribution -1.058 -0.673 -0.600 1.390 sum -17.185 -5.326 23.731 29.780 Atomic orbital electron populations 1.22238 0.96918 1.01482 1.02115 1.21416 0.93235 0.84084 1.03013 1.47953 1.64738 1.13312 1.07007 1.19616 0.97264 0.93332 0.80035 1.21330 0.95363 1.32841 1.07014 0.90786 1.24868 0.95011 0.95825 0.97402 1.69900 1.15097 1.45038 1.23562 0.86846 0.81403 0.81672 0.79723 1.19908 1.21102 1.19150 1.20045 0.78826 0.87141 0.84510 1.90683 1.43971 1.17848 1.86757 1.22669 1.00855 0.96790 0.92347 1.68421 1.32803 1.15646 1.00252 1.24417 1.01927 0.95718 0.91432 1.23063 0.88477 0.98565 0.88602 1.46095 1.36576 1.18347 1.36185 1.20222 0.83692 0.84591 0.80358 1.90752 1.57384 1.22098 1.69963 1.22988 0.94765 1.01547 0.97756 0.86834 1.23208 0.95484 0.98152 1.00567 1.23460 0.93798 0.98045 0.87380 1.88438 1.31336 1.74927 1.35198 1.23068 0.83856 0.98794 0.95703 1.24574 0.92925 1.02270 0.93586 0.93296 0.92144 0.92002 0.89679 0.91679 0.95379 0.94701 0.92600 0.88235 0.91552 0.88112 0.90841 0.85539 0.76506 0.88789 0.89184 0.89182 0.91804 0.90491 0.90701 0.91058 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.24 37.16 0.38 -1.61 16 2 C 0.11 1.58 5.93 -4.04 -0.02 1.56 16 3 N -0.60 -12.05 2.46 -175.06 -0.43 -12.48 16 4 C 0.22 5.35 4.23 -5.20 -0.02 5.33 16 5 C -0.53 -15.25 9.94 -34.44 -0.34 -15.59 16 6 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 9 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 10 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 13 C 0.51 10.30 7.72 -10.98 -0.08 10.22 16 14 O -0.52 -13.04 16.01 5.56 0.09 -12.95 16 15 C 0.01 0.07 3.83 -4.97 -0.02 0.05 16 16 N -0.45 -6.16 5.65 -239.66 -1.35 -7.52 16 17 C -0.01 -0.05 7.70 -2.76 -0.02 -0.07 16 18 C 0.12 1.15 4.39 -69.62 -0.31 0.84 16 19 N -0.72 -5.07 5.32 -54.94 -0.29 -5.36 16 20 C 0.53 4.65 7.02 -10.98 -0.08 4.57 16 21 O -0.53 -6.99 15.39 5.55 0.09 -6.90 16 22 C -0.15 -0.88 3.40 -89.74 -0.31 -1.19 16 23 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 24 C -0.14 -0.87 6.24 -24.40 -0.15 -1.03 16 25 C 0.05 0.29 7.78 38.18 0.30 0.59 16 26 O -0.38 -3.18 11.36 -35.23 -0.40 -3.58 16 27 C 0.06 0.39 7.34 37.88 0.28 0.67 16 28 C 0.00 -0.04 7.77 -2.63 -0.02 -0.06 16 29 H 0.05 0.53 7.22 -51.93 -0.37 0.16 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 33 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 34 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 35 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 36 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 37 H 0.10 1.23 7.34 -51.93 -0.38 0.85 16 38 H 0.07 0.73 6.43 -51.93 -0.33 0.40 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.46 7.89 -51.93 -0.41 0.05 16 41 H 0.13 1.50 7.51 -51.93 -0.39 1.11 16 42 H 0.40 1.58 8.71 -40.82 -0.36 1.22 16 43 H 0.09 0.80 7.47 -51.93 -0.39 0.41 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 47 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.07 0.52 7.80 -51.93 -0.41 0.11 16 49 H 0.07 0.73 7.49 -51.93 -0.39 0.34 16 50 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 403.36 15.07 6.08 6.08 Total: -1.00 -38.48 403.36 -8.94 -47.41 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -8.30 Total: -0.96 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -0.52 Total: 6.26 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -1.30 Total: -52.50 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.23 Total: -23.44 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.48 -8.94 -47.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001400348409.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.042 kcal (2) G-P(sol) polarization free energy of solvation -38.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds