Wall clock time and date at job start Tue Mar 31 2020 23:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47131 * 2 1 4 4 C 1.46500 * 119.99922 * 269.99564 * 3 2 1 5 5 C 1.50696 * 109.47405 * 270.00322 * 4 3 2 6 6 H 1.08002 * 120.00172 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99982 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99580 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00041 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46950 * 89.99858 * 9 7 5 11 11 H 1.48493 * 109.47172 * 209.99811 * 9 7 5 12 12 H 1.48503 * 109.47246 * 329.99874 * 9 7 5 13 13 C 1.34778 * 120.00205 * 90.00208 * 3 2 1 14 14 O 1.21274 * 120.00058 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99863 * 359.97438 * 13 3 2 16 16 N 1.46898 * 109.46832 * 180.02562 * 15 13 3 17 17 C 1.47962 * 110.99575 * 190.00008 * 16 15 13 18 18 C 1.53938 * 86.17971 * 222.41588 * 17 16 15 19 19 N 1.46503 * 113.73297 * 138.07869 * 18 17 16 20 20 C 1.34779 * 119.99752 * 156.89993 * 19 18 17 21 21 O 1.21284 * 119.99836 * 0.02562 * 20 19 18 22 22 C 1.50700 * 119.99616 * 179.97438 * 20 19 18 23 23 H 1.08994 * 110.90992 * 62.13759 * 22 20 19 24 24 C 1.55457 * 110.92154 * 185.75287 * 22 20 19 25 25 C 1.54947 * 100.98961 * 152.22952 * 24 22 20 26 26 O 1.43650 * 105.13275 * 323.60678 * 25 24 22 27 27 C 1.43233 * 109.97542 * 24.42908 * 26 25 24 28 28 C 1.48187 * 111.07132 * 90.57020 * 16 15 13 29 29 H 1.09001 * 109.46749 * 300.00262 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00231 * 1 2 3 31 31 H 1.08998 * 109.47043 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46880 * 239.99429 * 2 1 3 33 33 H 1.09001 * 109.47066 * 119.99769 * 2 1 3 34 34 H 1.09003 * 109.46942 * 30.00318 * 4 3 2 35 35 H 1.09002 * 109.47097 * 149.99902 * 4 3 2 36 36 H 0.96999 * 119.99467 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.47010 * 59.99893 * 15 13 3 38 38 H 1.09006 * 109.46646 * 300.00177 * 15 13 3 39 39 H 1.08998 * 113.76116 * 108.10077 * 17 16 15 40 40 H 1.08999 * 113.75987 * 336.73457 * 17 16 15 41 41 H 1.08994 * 113.73582 * 269.25564 * 18 17 16 42 42 H 0.96995 * 120.00159 * 336.90051 * 19 18 17 43 43 H 1.08999 * 111.05650 * 34.31564 * 24 22 20 44 44 H 1.09001 * 111.18400 * 270.19747 * 24 22 20 45 45 H 1.08996 * 110.31348 * 204.69266 * 25 24 22 46 46 H 1.08998 * 110.39377 * 82.56129 * 25 24 22 47 47 H 1.09002 * 109.83312 * 117.80151 * 27 26 25 48 48 H 1.08996 * 109.82720 * 238.68562 * 27 26 25 49 49 H 1.09001 * 113.76310 * 23.23004 * 28 16 15 50 50 H 1.09007 * 113.82238 * 251.80995 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0962 7 6 4.1492 2.3895 -2.8780 8 7 5.3914 2.1832 -3.2573 9 14 3.0129 3.4350 -3.9293 10 1 3.1165 4.8553 -3.5082 11 1 3.4058 3.3118 -5.3560 12 1 1.6132 2.9691 -3.7593 13 6 2.2431 2.0166 1.1672 14 8 2.6478 3.1598 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3092 2.2066 3.5888 17 6 2.3050 1.4768 4.8759 18 6 1.5617 2.6975 5.4478 19 7 0.4580 2.3484 6.3457 20 6 0.0271 3.2385 7.2615 21 8 0.5528 4.3285 7.3419 22 6 -1.1086 2.8795 8.1848 23 1 -0.8444 2.0300 8.8144 24 6 -1.5270 4.1007 9.0510 25 6 -3.0197 3.7789 9.3138 26 8 -3.4924 3.1745 8.0995 27 6 -2.3969 2.5909 7.3846 28 6 1.1173 2.9841 4.0021 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 5.7175 2.5736 -4.0832 37 1 2.6212 0.4186 2.5302 38 1 0.9432 1.0126 2.5298 39 1 3.2981 1.3290 5.3002 40 1 1.7072 0.5654 4.8622 41 1 2.2224 3.4587 5.8627 42 1 0.0374 1.4768 6.2812 43 1 -1.4179 5.0315 8.4943 44 1 -0.9624 4.1346 9.9828 45 1 -3.5734 4.6946 9.5210 46 1 -3.1172 3.0820 10.1462 47 1 -2.5442 1.5145 7.2967 48 1 -2.3237 3.0363 6.3925 49 1 0.1713 2.5146 3.7322 50 1 1.1632 4.0385 3.7294 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001400348409.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:51 Heat of formation + Delta-G solvation = -101.213846 kcal Electronic energy + Delta-G solvation = -29747.108454 eV Core-core repulsion = 25581.642801 eV Total energy + Delta-G solvation = -4165.465653 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.84347 -41.03275 -40.10607 -39.16523 -36.92630 -35.25179 -34.84371 -33.35353 -32.09799 -31.30572 -30.27998 -29.30113 -27.20039 -26.22923 -24.55605 -24.27022 -23.56294 -23.01054 -21.46619 -20.97269 -19.92460 -19.11695 -18.53949 -18.05586 -17.88580 -17.63413 -17.13759 -16.69920 -16.57358 -16.24201 -16.06464 -15.71307 -15.57613 -15.14807 -14.89792 -14.70167 -14.60771 -14.30414 -14.20490 -13.98919 -13.82536 -13.70916 -13.41730 -13.20694 -13.17167 -12.86544 -12.58687 -12.48199 -12.40635 -12.39223 -12.31868 -12.08672 -11.99038 -11.94755 -11.76055 -11.74943 -11.09321 -10.84615 -10.61699 -10.49543 -10.19881 -9.76152 -9.37712 -8.35299 -6.39654 1.29526 1.34536 1.42271 1.46640 1.84622 1.93939 2.27747 2.29320 2.85735 2.94494 2.99034 3.22953 3.42382 3.64788 3.71138 3.84063 3.91295 4.02011 4.11070 4.12374 4.14673 4.23739 4.29002 4.30389 4.39806 4.43344 4.63625 4.64148 4.70313 4.76165 4.78831 4.79733 4.84041 4.90842 4.90929 4.94527 5.01261 5.02026 5.13302 5.30312 5.37515 5.39596 5.46945 5.66793 5.89741 5.95817 6.24652 6.45802 6.61575 6.77124 7.16028 7.21495 7.51195 8.81675 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019993 B = 0.002067 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.183547 B =13540.033640 C =13752.352161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.227 3.773 5 C -0.533 4.533 6 H 0.028 0.972 7 C 0.008 3.992 8 N -0.945 5.945 9 Si 0.948 3.052 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.238 1.238 13 C 0.495 3.505 14 O -0.584 6.584 15 C 0.021 3.979 16 N -0.495 5.495 17 C 0.013 3.987 18 C 0.128 3.872 19 N -0.701 5.701 20 C 0.523 3.477 21 O -0.580 6.580 22 C -0.138 4.138 23 H 0.149 0.851 24 C -0.140 4.140 25 C 0.050 3.950 26 O -0.406 6.406 27 C 0.062 3.938 28 C -0.005 4.005 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.047 0.953 35 H 0.012 0.988 36 H 0.268 0.732 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.421 0.579 43 H 0.064 0.936 44 H 0.102 0.898 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.108 0.892 48 H 0.061 0.939 49 H 0.096 0.904 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.359 -9.437 26.285 34.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.337 5.337 4 C 0.104 3.896 5 C -0.572 4.572 6 H 0.047 0.953 7 C -0.189 4.189 8 N -0.585 5.585 9 Si 0.771 3.229 10 H -0.206 1.206 11 H -0.198 1.198 12 H -0.161 1.161 13 C 0.283 3.717 14 O -0.463 6.463 15 C -0.110 4.110 16 N -0.219 5.219 17 C -0.115 4.115 18 C 0.022 3.978 19 N -0.353 5.353 20 C 0.310 3.690 21 O -0.459 6.459 22 C -0.159 4.159 23 H 0.167 0.833 24 C -0.178 4.178 25 C -0.026 4.026 26 O -0.326 6.326 27 C -0.015 4.015 28 C -0.135 4.135 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.065 0.935 35 H 0.030 0.970 36 H 0.077 0.923 37 H 0.139 0.861 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.135 0.865 41 H 0.115 0.885 42 H 0.260 0.740 43 H 0.082 0.918 44 H 0.120 0.880 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.126 0.874 48 H 0.079 0.921 49 H 0.114 0.886 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.277 -7.746 25.885 33.191 hybrid contribution -0.008 0.235 -1.024 1.051 sum -19.285 -7.511 24.861 32.348 Atomic orbital electron populations 1.22157 0.93915 1.03684 1.01979 1.21785 0.95614 0.81013 1.04022 1.48103 1.64594 1.15301 1.05658 1.19228 0.94691 0.92781 0.82862 1.21571 0.97139 1.31944 1.06520 0.95332 1.25870 0.96759 0.97246 0.99072 1.70052 1.17330 1.46616 1.24491 0.85718 0.80494 0.78871 0.77864 1.20565 1.19793 1.16136 1.21328 0.77145 0.86731 0.86475 1.90646 1.46850 1.20928 1.87871 1.22613 1.03649 0.96170 0.88576 1.68324 1.34037 1.17388 1.02106 1.24457 1.02750 0.96299 0.88002 1.22647 0.88805 0.98649 0.87736 1.45867 1.35570 1.18986 1.34896 1.20797 0.83822 0.83850 0.80498 1.90743 1.59253 1.24407 1.71470 1.23003 0.93350 1.02288 0.97241 0.83347 1.23195 0.96452 0.97261 1.00889 1.23572 0.93005 0.98715 0.87296 1.88406 1.32573 1.75376 1.36231 1.23182 0.83241 1.00287 0.94760 1.24551 0.93644 1.00234 0.95029 0.91872 0.93898 0.88533 0.91224 0.88254 0.93486 0.97027 0.92314 0.86082 0.87453 0.87817 0.86544 0.88489 0.74028 0.91758 0.87959 0.89057 0.89551 0.87400 0.92096 0.88636 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 10.24 71.98 0.74 -2.37 16 2 C 0.10 2.65 5.93 86.38 0.51 3.16 16 3 N -0.60 -24.11 2.46 -826.16 -2.03 -26.14 16 4 C 0.23 11.27 4.23 85.63 0.36 11.63 16 5 C -0.53 -32.01 9.94 25.60 0.25 -31.75 16 6 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 7 C 0.01 0.51 5.47 84.66 0.46 0.97 16 8 N -0.94 -60.81 13.96 21.45 0.30 -60.51 16 9 Si 0.95 45.64 27.47 68.60 1.88 47.52 16 10 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.24 -10.28 6.54 99.48 0.65 -9.62 16 13 C 0.49 19.96 7.72 87.66 0.68 20.64 16 14 O -0.58 -30.70 16.01 -3.01 -0.05 -30.75 16 15 C 0.02 0.53 3.83 85.56 0.33 0.85 16 16 N -0.50 -12.96 5.65 -912.16 -5.15 -18.12 16 17 C 0.01 0.20 7.70 86.41 0.67 0.86 16 18 C 0.13 2.34 4.39 46.56 0.20 2.54 16 19 N -0.70 -8.07 5.32 -446.12 -2.37 -10.44 16 20 C 0.52 8.60 7.02 87.66 0.62 9.22 16 21 O -0.58 -15.88 15.39 -3.04 -0.05 -15.93 16 22 C -0.14 -1.29 3.40 -10.23 -0.03 -1.32 16 23 H 0.15 0.40 8.14 -2.39 -0.02 0.38 16 24 C -0.14 -1.66 6.24 32.11 0.20 -1.46 16 25 C 0.05 0.50 7.78 72.65 0.57 1.06 16 26 O -0.41 -6.02 11.36 -148.98 -1.69 -7.71 16 27 C 0.06 0.60 7.34 72.45 0.53 1.13 16 28 C 0.00 -0.11 7.77 86.37 0.67 0.56 16 29 H 0.06 1.07 7.22 -2.39 -0.02 1.05 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 33 H 0.10 2.00 6.44 -2.39 -0.02 1.98 16 34 H 0.05 2.14 7.13 -2.39 -0.02 2.13 16 35 H 0.01 0.63 6.85 -2.39 -0.02 0.62 16 36 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 37 H 0.12 2.50 7.34 -2.39 -0.02 2.49 16 38 H 0.11 1.79 6.43 -2.38 -0.02 1.77 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.12 0.75 7.89 -2.39 -0.02 0.73 16 41 H 0.10 2.40 7.51 -2.39 -0.02 2.38 16 42 H 0.42 1.38 8.71 -92.71 -0.81 0.57 16 43 H 0.06 1.15 7.47 -2.39 -0.02 1.13 16 44 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 48 H 0.06 0.74 7.80 -2.39 -0.02 0.72 16 49 H 0.10 1.70 7.49 -2.39 -0.02 1.69 16 50 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -93.51 403.36 -2.32 -95.84 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.08 Total: 10.51 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 6.75 Total: 15.72 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -9.25 Total: -115.21 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -1.79 Total: -54.39 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.52 kcal Total: -93.51 -2.32 -95.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001400348409.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.375 kcal (2) G-P(sol) polarization free energy of solvation -93.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds