Wall clock time and date at job start Tue Mar 31 2020 23:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.46741 * 2 1 4 4 C 1.46899 * 111.00355 * 59.18370 * 3 2 1 5 5 C 1.53000 * 109.47095 * 66.04515 * 4 3 2 6 6 C 1.52997 * 109.47174 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.47054 * 180.02562 * 6 5 4 8 8 C 1.34774 * 120.00316 * 180.02562 * 7 6 5 9 9 O 1.21289 * 119.99724 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00495 * 180.02562 * 8 7 6 11 11 H 1.09004 * 115.50615 * 325.58111 * 10 8 7 12 12 C 1.52995 * 117.43557 * 110.95153 * 10 8 7 13 13 H 1.09004 * 119.80705 * 355.37275 * 12 10 8 14 14 C 1.54539 * 118.03187 * 198.16959 * 12 10 8 15 15 O 1.44420 * 104.72675 * 273.04406 * 14 12 10 16 16 C 1.44422 * 105.27944 * 40.52901 * 15 14 12 17 17 C 1.52999 * 117.43323 * 180.21080 * 10 8 7 18 18 H 1.08999 * 119.80850 * 5.65356 * 17 10 8 19 19 C 1.46906 * 110.99805 * 295.22704 * 3 2 1 20 20 C 1.50693 * 109.47489 * 288.24166 * 19 3 2 21 21 O 1.21290 * 119.99843 * 354.29892 * 20 19 3 22 22 N 1.34780 * 120.00233 * 174.30177 * 20 19 3 23 23 C 1.37093 * 119.99874 * 179.97438 * 22 20 19 24 24 H 1.07997 * 120.00435 * 359.97438 * 23 22 20 25 25 C 1.38953 * 119.99576 * 180.02562 * 23 22 20 26 26 N 1.31411 * 120.00319 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99921 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47073 * 89.99680 * 27 25 23 29 29 H 1.48493 * 109.47149 * 209.99776 * 27 25 23 30 30 H 1.48502 * 109.46888 * 329.99541 * 27 25 23 31 31 H 1.08997 * 109.47737 * 299.99417 * 1 2 3 32 32 H 1.09005 * 109.46956 * 59.99716 * 1 2 3 33 33 H 1.08997 * 109.46731 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47225 * 240.00076 * 2 1 3 35 35 H 1.08995 * 109.46916 * 119.99321 * 2 1 3 36 36 H 1.09001 * 109.46620 * 306.04803 * 4 3 2 37 37 H 1.08998 * 109.47237 * 186.04652 * 4 3 2 38 38 H 1.09007 * 109.47271 * 300.00410 * 5 4 3 39 39 H 1.09005 * 109.46902 * 59.99898 * 5 4 3 40 40 H 1.08998 * 109.47120 * 300.00113 * 6 5 4 41 41 H 1.08994 * 109.47207 * 60.00553 * 6 5 4 42 42 H 0.97005 * 119.99913 * 0.02562 * 7 6 5 43 43 H 1.09003 * 110.39427 * 154.24195 * 14 12 10 44 44 H 1.09001 * 110.51319 * 31.90249 * 14 12 10 45 45 H 1.09000 * 110.37241 * 200.65468 * 16 15 14 46 46 H 1.08998 * 110.37473 * 78.31720 * 16 15 14 47 47 H 1.09002 * 109.46952 * 48.24746 * 19 3 2 48 48 H 1.09005 * 109.47082 * 168.23812 * 19 3 2 49 49 H 0.96996 * 119.99505 * 0.02562 * 22 20 19 50 50 H 0.96999 * 120.00176 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5327 2.1156 1.1778 5 6 2.1474 1.5123 2.4423 6 6 1.6398 2.2727 3.6690 7 7 2.2290 1.6954 4.8797 8 6 1.9229 2.2074 6.0883 9 8 1.1601 3.1465 6.1735 10 6 2.5294 1.6139 7.3336 11 1 2.6913 0.5362 7.3092 12 6 3.5498 2.4629 8.0944 13 1 3.8664 3.4233 7.6875 14 6 4.4867 1.7492 9.0948 15 8 3.7466 1.7207 10.3347 16 6 2.3860 1.4156 9.9588 17 6 2.1375 2.2377 8.6746 18 1 1.3753 3.0161 8.7080 19 6 1.6439 2.0762 -1.2407 20 6 2.4638 1.5369 -2.3842 21 8 3.3514 0.7384 -2.1704 22 7 2.2110 1.9419 -3.6446 23 6 2.9573 1.4517 -4.6849 24 1 3.7482 0.7413 -4.4944 25 6 2.6970 1.8697 -5.9842 26 7 1.7351 2.7345 -6.2159 27 14 3.7134 1.2012 -7.4018 28 1 3.0728 -0.0284 -7.9336 29 1 3.7945 2.2219 -8.4772 30 1 5.0811 0.8788 -6.9213 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 0.4466 2.0388 1.2295 37 1 1.8194 3.1642 1.0991 38 1 1.8607 0.4635 2.5210 39 1 3.2335 1.5890 2.3904 40 1 1.9262 3.3215 3.5905 41 1 0.5538 2.1955 3.7206 42 1 2.8394 0.9445 4.8115 43 1 5.4115 2.3130 9.2177 44 1 4.7031 0.7351 8.7587 45 1 1.6970 1.7231 10.7454 46 1 2.2786 0.3504 9.7542 47 1 0.5856 1.9107 -1.4426 48 1 1.8302 3.1447 -1.1321 49 1 1.5015 2.5808 -3.8155 50 1 1.5531 3.0260 -7.1230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479852134.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:08 Heat of formation + Delta-G solvation = -79.459048 kcal Electronic energy + Delta-G solvation = -28516.756149 eV Core-core repulsion = 24352.233855 eV Total energy + Delta-G solvation = -4164.522294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.20248 -39.48311 -38.90542 -37.22091 -35.57942 -34.97812 -33.85142 -31.95934 -31.23456 -30.08463 -29.26636 -27.73027 -26.43736 -24.94919 -24.27388 -22.99499 -22.11065 -21.21241 -20.76777 -19.92419 -18.93283 -18.05081 -17.78719 -16.69934 -16.39984 -16.35569 -16.02454 -15.80614 -15.63798 -15.38972 -15.15978 -14.55286 -14.44781 -14.22766 -13.82746 -13.58930 -13.44206 -13.24459 -13.15440 -13.03306 -12.35285 -12.28164 -12.13170 -12.09086 -11.93586 -11.84850 -11.58060 -11.46430 -11.20594 -11.08513 -10.95373 -10.86035 -10.83562 -10.39397 -10.36719 -10.24563 -10.21112 -10.18129 -9.46953 -9.42483 -8.45217 -7.95263 -7.83369 -6.40576 -3.81292 1.96670 2.61967 3.05533 3.17958 3.26529 3.32355 3.47079 3.87581 3.93644 3.98527 3.99920 4.23924 4.26970 4.33132 4.53106 4.58334 4.76282 4.79260 4.87014 5.00487 5.07887 5.10536 5.13241 5.18532 5.22921 5.27152 5.36624 5.43754 5.45508 5.47271 5.54887 5.57078 5.63650 5.70802 5.87608 5.92524 5.98908 6.07327 6.13114 6.14689 6.26057 6.32393 6.50701 7.10087 7.26258 7.37428 7.56010 7.82239 8.07917 8.63851 9.19805 9.56636 10.08939 10.77263 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029501 B = 0.001484 C = 0.001462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.876713 B =18865.562111 C =19150.434325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.050 3.950 3 N -0.511 5.511 4 C 0.053 3.947 5 C -0.127 4.127 6 C 0.120 3.880 7 N -0.722 5.722 8 C 0.542 3.458 9 O -0.537 6.537 10 C -0.151 4.151 11 H 0.125 0.875 12 C -0.166 4.166 13 H 0.129 0.871 14 C 0.073 3.927 15 O -0.371 6.371 16 C 0.072 3.928 17 C -0.160 4.160 18 H 0.136 0.864 19 C 0.041 3.959 20 C 0.445 3.555 21 O -0.577 6.577 22 N -0.567 5.567 23 C -0.298 4.298 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.903 5.903 27 Si 0.929 3.071 28 H -0.279 1.279 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.403 0.597 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.103 0.897 46 H 0.066 0.934 47 H 0.053 0.947 48 H 0.087 0.913 49 H 0.391 0.609 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.455 -2.424 27.690 27.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.078 4.078 3 N -0.234 5.234 4 C -0.075 4.075 5 C -0.165 4.165 6 C -0.004 4.004 7 N -0.373 5.373 8 C 0.328 3.672 9 O -0.414 6.414 10 C -0.173 4.173 11 H 0.143 0.857 12 C -0.185 4.185 13 H 0.147 0.853 14 C -0.003 4.003 15 O -0.290 6.290 16 C -0.004 4.004 17 C -0.179 4.179 18 H 0.154 0.846 19 C -0.090 4.090 20 C 0.230 3.770 21 O -0.460 6.460 22 N -0.204 5.204 23 C -0.428 4.428 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.544 5.544 27 Si 0.756 3.244 28 H -0.205 1.205 29 H -0.210 1.210 30 H -0.194 1.194 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.238 0.762 43 H 0.121 0.879 44 H 0.085 0.915 45 H 0.121 0.879 46 H 0.084 0.916 47 H 0.071 0.929 48 H 0.105 0.895 49 H 0.224 0.776 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.858 -2.165 27.935 28.032 hybrid contribution -0.780 -0.204 -1.410 1.624 sum -1.637 -2.370 26.525 26.681 Atomic orbital electron populations 1.22470 0.99072 1.02154 1.01703 1.22212 0.91775 0.90181 1.03645 1.61763 1.59176 1.01993 1.00434 1.22033 0.97413 0.98259 0.89826 1.21767 1.02330 0.99966 0.92436 1.21379 0.98219 0.97992 0.82795 1.45917 1.48876 1.36612 1.05863 1.19465 0.81047 0.82889 0.83809 1.90728 1.35800 1.28043 1.86811 1.22403 1.03317 1.00090 0.91450 0.85717 1.24193 0.91472 1.01556 1.01275 0.85321 1.22977 0.94836 0.99865 0.82631 1.89211 1.19541 1.91977 1.28236 1.22980 0.84388 0.98155 0.94907 1.24177 0.99538 1.03131 0.91009 0.84632 1.21922 0.97948 0.98871 0.90263 1.19758 0.87416 0.86267 0.83513 1.90507 1.34360 1.37162 1.83977 1.41876 1.32927 1.40684 1.04915 1.19689 1.14434 1.23754 0.84908 0.87964 1.25245 0.97246 0.96721 0.98740 1.69610 1.30682 1.32019 1.22110 0.85872 0.80027 0.78272 0.80197 1.20474 1.20958 1.19442 0.92784 0.92296 0.92273 0.89078 0.91190 0.94251 0.90672 0.91080 0.90102 0.91182 0.91410 0.76207 0.87912 0.91475 0.87924 0.91625 0.92948 0.89524 0.77570 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.44 9.26 37.16 0.34 -2.09 16 2 C 0.05 0.73 5.52 -3.82 -0.02 0.71 16 3 N -0.51 -7.92 4.31 -236.07 -1.02 -8.93 16 4 C 0.05 0.62 4.69 -3.82 -0.02 0.60 16 5 C -0.13 -1.17 5.25 -26.73 -0.14 -1.32 16 6 C 0.12 1.06 5.67 -4.04 -0.02 1.04 16 7 N -0.72 -5.59 5.56 -60.30 -0.33 -5.93 16 8 C 0.54 5.13 7.61 -10.99 -0.08 5.04 16 9 O -0.54 -7.24 16.34 5.55 0.09 -7.14 16 10 C -0.15 -1.00 5.74 -91.78 -0.53 -1.53 16 11 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 12 C -0.17 -1.08 6.91 -89.12 -0.62 -1.69 16 13 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 14 C 0.07 0.41 7.44 37.97 0.28 0.70 16 15 O -0.37 -2.93 11.65 -35.23 -0.41 -3.34 16 16 C 0.07 0.43 7.44 37.94 0.28 0.71 16 17 C -0.16 -1.12 6.64 -89.14 -0.59 -1.72 16 18 H 0.14 1.11 7.82 -51.93 -0.41 0.71 16 19 C 0.04 0.71 5.34 -4.98 -0.03 0.69 16 20 C 0.45 10.35 7.36 -10.99 -0.08 10.27 16 21 O -0.58 -15.36 14.70 5.55 0.08 -15.28 16 22 N -0.57 -14.25 5.29 -10.97 -0.06 -14.30 16 23 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 24 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 27 Si 0.93 20.98 29.55 -169.99 -5.02 15.95 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 29 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 30 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 31 H 0.05 0.59 6.26 -51.93 -0.33 0.27 16 32 H 0.06 0.81 6.30 -51.93 -0.33 0.48 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.68 6.54 -51.93 -0.34 1.34 16 35 H 0.07 0.90 6.51 -51.93 -0.34 0.56 16 36 H 0.04 0.43 5.98 -51.93 -0.31 0.12 16 37 H 0.07 0.84 7.86 -51.93 -0.41 0.44 16 38 H 0.07 0.63 6.57 -51.93 -0.34 0.29 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.40 2.13 8.47 -40.82 -0.35 1.79 16 43 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.05 0.84 5.97 -51.93 -0.31 0.53 16 48 H 0.09 1.37 7.81 -51.93 -0.41 0.97 16 49 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 50 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 402.70 15.07 6.07 6.07 Total: -1.00 -33.97 402.70 -9.26 -43.22 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -7.92 Total: 9.96 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -1.46 Total: 3.48 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.69 Total: -52.92 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.24 Total: -25.77 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.97 -9.26 -43.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479852134.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.237 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds