Wall clock time and date at job start Tue Mar 31 2020 23:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.46741 * 2 1 4 4 C 1.46899 * 111.00355 * 59.18370 * 3 2 1 5 5 C 1.53000 * 109.47095 * 66.04515 * 4 3 2 6 6 C 1.52997 * 109.47174 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.47054 * 180.02562 * 6 5 4 8 8 C 1.34774 * 120.00316 * 180.02562 * 7 6 5 9 9 O 1.21289 * 119.99724 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00495 * 180.02562 * 8 7 6 11 11 H 1.09004 * 115.50615 * 325.58111 * 10 8 7 12 12 C 1.52995 * 117.43557 * 110.95153 * 10 8 7 13 13 H 1.09004 * 119.80705 * 355.37275 * 12 10 8 14 14 C 1.54539 * 118.03187 * 198.16959 * 12 10 8 15 15 O 1.44420 * 104.72675 * 273.04406 * 14 12 10 16 16 C 1.44422 * 105.27944 * 40.52901 * 15 14 12 17 17 C 1.52999 * 117.43323 * 180.21080 * 10 8 7 18 18 H 1.08999 * 119.80850 * 5.65356 * 17 10 8 19 19 C 1.46906 * 110.99805 * 295.22704 * 3 2 1 20 20 C 1.50693 * 109.47489 * 288.24166 * 19 3 2 21 21 O 1.21290 * 119.99843 * 354.29892 * 20 19 3 22 22 N 1.34780 * 120.00233 * 174.30177 * 20 19 3 23 23 C 1.37093 * 119.99874 * 179.97438 * 22 20 19 24 24 H 1.07997 * 120.00435 * 359.97438 * 23 22 20 25 25 C 1.38953 * 119.99576 * 180.02562 * 23 22 20 26 26 N 1.31411 * 120.00319 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99921 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47073 * 89.99680 * 27 25 23 29 29 H 1.48493 * 109.47149 * 209.99776 * 27 25 23 30 30 H 1.48502 * 109.46888 * 329.99541 * 27 25 23 31 31 H 1.08997 * 109.47737 * 299.99417 * 1 2 3 32 32 H 1.09005 * 109.46956 * 59.99716 * 1 2 3 33 33 H 1.08997 * 109.46731 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47225 * 240.00076 * 2 1 3 35 35 H 1.08995 * 109.46916 * 119.99321 * 2 1 3 36 36 H 1.09001 * 109.46620 * 306.04803 * 4 3 2 37 37 H 1.08998 * 109.47237 * 186.04652 * 4 3 2 38 38 H 1.09007 * 109.47271 * 300.00410 * 5 4 3 39 39 H 1.09005 * 109.46902 * 59.99898 * 5 4 3 40 40 H 1.08998 * 109.47120 * 300.00113 * 6 5 4 41 41 H 1.08994 * 109.47207 * 60.00553 * 6 5 4 42 42 H 0.97005 * 119.99913 * 0.02562 * 7 6 5 43 43 H 1.09003 * 110.39427 * 154.24195 * 14 12 10 44 44 H 1.09001 * 110.51319 * 31.90249 * 14 12 10 45 45 H 1.09000 * 110.37241 * 200.65468 * 16 15 14 46 46 H 1.08998 * 110.37473 * 78.31720 * 16 15 14 47 47 H 1.09002 * 109.46952 * 48.24746 * 19 3 2 48 48 H 1.09005 * 109.47082 * 168.23812 * 19 3 2 49 49 H 0.96996 * 119.99505 * 0.02562 * 22 20 19 50 50 H 0.96999 * 120.00176 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5327 2.1156 1.1778 5 6 2.1474 1.5123 2.4423 6 6 1.6398 2.2727 3.6690 7 7 2.2290 1.6954 4.8797 8 6 1.9229 2.2074 6.0883 9 8 1.1601 3.1465 6.1735 10 6 2.5294 1.6139 7.3336 11 1 2.6913 0.5362 7.3092 12 6 3.5498 2.4629 8.0944 13 1 3.8664 3.4233 7.6875 14 6 4.4867 1.7492 9.0948 15 8 3.7466 1.7207 10.3347 16 6 2.3860 1.4156 9.9588 17 6 2.1375 2.2377 8.6746 18 1 1.3753 3.0161 8.7080 19 6 1.6439 2.0762 -1.2407 20 6 2.4638 1.5369 -2.3842 21 8 3.3514 0.7384 -2.1704 22 7 2.2110 1.9419 -3.6446 23 6 2.9573 1.4517 -4.6849 24 1 3.7482 0.7413 -4.4944 25 6 2.6970 1.8697 -5.9842 26 7 1.7351 2.7345 -6.2159 27 14 3.7134 1.2012 -7.4018 28 1 3.0728 -0.0284 -7.9336 29 1 3.7945 2.2219 -8.4772 30 1 5.0811 0.8788 -6.9213 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 0.4466 2.0388 1.2295 37 1 1.8194 3.1642 1.0991 38 1 1.8607 0.4635 2.5210 39 1 3.2335 1.5890 2.3904 40 1 1.9262 3.3215 3.5905 41 1 0.5538 2.1955 3.7206 42 1 2.8394 0.9445 4.8115 43 1 5.4115 2.3130 9.2177 44 1 4.7031 0.7351 8.7587 45 1 1.6970 1.7231 10.7454 46 1 2.2786 0.3504 9.7542 47 1 0.5856 1.9107 -1.4426 48 1 1.8302 3.1447 -1.1321 49 1 1.5015 2.5808 -3.8155 50 1 1.5531 3.0260 -7.1230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479852134.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:07 Heat of formation + Delta-G solvation = -105.625556 kcal Electronic energy + Delta-G solvation = -28517.890814 eV Core-core repulsion = 24352.233855 eV Total energy + Delta-G solvation = -4165.656959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.77062 -40.53286 -40.08082 -38.66639 -36.42556 -35.83212 -35.57862 -33.26315 -32.81543 -31.30782 -29.69343 -28.84788 -27.43276 -26.25056 -25.57802 -23.83821 -22.82754 -21.75112 -21.63885 -20.97342 -20.52906 -19.75892 -18.66204 -17.77329 -17.40883 -17.16733 -17.01049 -16.79379 -16.50395 -16.29186 -16.11764 -16.09267 -15.70829 -15.28341 -15.03737 -14.84817 -14.63187 -14.37838 -14.01964 -13.63882 -13.59892 -13.43412 -13.17592 -13.01750 -12.93656 -12.86316 -12.73745 -12.70974 -12.55056 -12.40056 -12.18701 -12.11680 -11.94943 -11.51147 -11.47745 -11.35412 -11.33025 -10.98465 -10.66554 -10.28193 -10.15435 -9.97909 -9.09360 -8.44710 -5.93206 1.28669 1.38514 1.41931 1.54627 1.96297 2.09688 2.29844 2.49531 2.80991 3.04034 3.22269 3.40839 3.46800 3.48765 3.74017 3.86726 3.94263 3.98654 4.07238 4.10569 4.15487 4.26222 4.28961 4.34362 4.40004 4.48050 4.54442 4.58852 4.60661 4.67040 4.68592 4.75358 4.76429 4.80470 4.96117 5.01352 5.04094 5.07541 5.19980 5.21625 5.36133 5.42091 5.44075 5.71925 5.92334 6.12446 6.27453 6.47687 6.63591 7.15115 7.15672 7.60059 8.16359 8.72726 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029501 B = 0.001484 C = 0.001462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.876713 B =18865.562111 C =19150.434325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.052 3.948 3 N -0.530 5.530 4 C 0.053 3.947 5 C -0.113 4.113 6 C 0.127 3.873 7 N -0.710 5.710 8 C 0.538 3.462 9 O -0.583 6.583 10 C -0.142 4.142 11 H 0.155 0.845 12 C -0.164 4.164 13 H 0.120 0.880 14 C 0.074 3.926 15 O -0.394 6.394 16 C 0.074 3.926 17 C -0.171 4.171 18 H 0.117 0.883 19 C 0.053 3.947 20 C 0.443 3.557 21 O -0.614 6.614 22 N -0.578 5.578 23 C -0.332 4.332 24 H 0.078 0.922 25 C -0.013 4.013 26 N -0.922 5.922 27 Si 0.992 3.008 28 H -0.271 1.271 29 H -0.272 1.272 30 H -0.273 1.273 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.418 0.582 43 H 0.112 0.888 44 H 0.086 0.914 45 H 0.109 0.891 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.105 0.895 49 H 0.395 0.605 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.541 -3.222 28.692 28.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.076 4.076 3 N -0.253 5.253 4 C -0.075 4.075 5 C -0.151 4.151 6 C 0.003 3.997 7 N -0.361 5.361 8 C 0.325 3.675 9 O -0.464 6.464 10 C -0.163 4.163 11 H 0.172 0.828 12 C -0.183 4.183 13 H 0.138 0.862 14 C -0.002 4.002 15 O -0.314 6.314 16 C -0.002 4.002 17 C -0.190 4.190 18 H 0.135 0.865 19 C -0.078 4.078 20 C 0.231 3.769 21 O -0.500 6.500 22 N -0.216 5.216 23 C -0.461 4.461 24 H 0.096 0.904 25 C -0.213 4.213 26 N -0.563 5.563 27 Si 0.816 3.184 28 H -0.197 1.197 29 H -0.196 1.196 30 H -0.198 1.198 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.255 0.745 43 H 0.130 0.870 44 H 0.105 0.895 45 H 0.127 0.873 46 H 0.102 0.898 47 H 0.088 0.912 48 H 0.123 0.877 49 H 0.228 0.772 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.945 -2.977 28.942 29.111 hybrid contribution -0.748 0.055 -1.673 1.834 sum -1.693 -2.922 27.269 27.478 Atomic orbital electron populations 1.22382 0.97139 1.03034 1.01965 1.22128 0.93332 0.89681 1.02468 1.61705 1.60323 1.02538 1.00740 1.22122 0.98345 0.98147 0.88869 1.21609 1.01786 1.00303 0.91370 1.21217 0.98048 0.97461 0.83007 1.45825 1.48524 1.36631 1.05151 1.19949 0.80398 0.82244 0.84871 1.90710 1.38009 1.30166 1.87496 1.22404 1.02753 1.01382 0.89715 0.82751 1.24219 0.91512 1.01410 1.01200 0.86209 1.23117 0.94571 1.00990 0.81548 1.89187 1.20492 1.92225 1.29464 1.23073 0.83813 0.98904 0.94390 1.24164 0.99508 1.03381 0.91963 0.86522 1.21772 0.97481 0.99568 0.88980 1.20823 0.86967 0.84924 0.84214 1.90474 1.36152 1.38652 1.84693 1.41954 1.33090 1.41159 1.05357 1.19652 1.15189 1.24765 0.86528 0.90355 1.26011 0.98118 0.96652 1.00505 1.69673 1.31328 1.32340 1.22959 0.84944 0.78227 0.78068 0.77198 1.19675 1.19639 1.19804 0.90580 0.93783 0.91187 0.93550 0.89066 0.92871 0.90324 0.90076 0.90598 0.92184 0.91691 0.74503 0.87022 0.89550 0.87254 0.89832 0.91240 0.87656 0.77179 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.29 9.26 71.98 0.67 -3.62 16 2 C 0.05 1.47 5.52 86.30 0.48 1.95 16 3 N -0.53 -15.75 4.31 -900.78 -3.88 -19.63 16 4 C 0.05 1.10 4.69 86.30 0.41 1.51 16 5 C -0.11 -1.82 5.25 30.59 0.16 -1.66 16 6 C 0.13 2.02 5.67 86.38 0.49 2.51 16 7 N -0.71 -9.59 5.56 -463.07 -2.57 -12.17 16 8 C 0.54 9.55 7.61 87.66 0.67 10.21 16 9 O -0.58 -15.71 16.34 -3.06 -0.05 -15.76 16 10 C -0.14 -1.61 5.74 -11.54 -0.07 -1.68 16 11 H 0.15 0.81 8.14 -2.38 -0.02 0.79 16 12 C -0.16 -1.93 6.91 -9.82 -0.07 -2.00 16 13 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 14 C 0.07 0.69 7.44 72.51 0.54 1.23 16 15 O -0.39 -5.64 11.65 -148.98 -1.74 -7.37 16 16 C 0.07 0.76 7.44 72.49 0.54 1.30 16 17 C -0.17 -2.27 6.64 -9.84 -0.07 -2.34 16 18 H 0.12 1.99 7.82 -2.39 -0.02 1.97 16 19 C 0.05 1.80 5.34 85.55 0.46 2.26 16 20 C 0.44 20.99 7.36 87.65 0.65 21.64 16 21 O -0.61 -33.72 14.70 -3.06 -0.04 -33.77 16 22 N -0.58 -29.70 5.29 -306.99 -1.62 -31.32 16 23 C -0.33 -18.88 9.68 84.04 0.81 -18.06 16 24 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 25 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 26 N -0.92 -49.88 13.05 21.66 0.28 -49.60 16 27 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 28 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 29 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 30 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 31 H 0.08 1.42 6.26 -2.39 -0.01 1.40 16 32 H 0.04 1.14 6.30 -2.38 -0.02 1.12 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.74 6.54 -2.39 -0.02 1.73 16 35 H 0.09 2.16 6.51 -2.39 -0.02 2.14 16 36 H 0.05 0.98 5.98 -2.39 -0.01 0.97 16 37 H 0.08 1.60 7.86 -2.39 -0.02 1.58 16 38 H 0.08 1.17 6.57 -2.38 -0.02 1.16 16 39 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.42 3.26 8.47 -92.70 -0.79 2.48 16 43 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16 46 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.07 2.14 5.97 -2.39 -0.01 2.13 16 48 H 0.11 3.18 7.81 -2.38 -0.02 3.17 16 49 H 0.39 19.34 7.90 -92.71 -0.73 18.61 16 50 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -75.52 402.70 -2.01 -77.53 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: -0.54 Total: 34.08 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 6.13 Total: 12.99 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -7.79 Total: -112.72 kcal Atomic # 8 Polarization: -55.07 SS G_CDS: -1.83 Total: -56.90 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -75.52 -2.01 -77.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479852134.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.097 kcal (2) G-P(sol) polarization free energy of solvation -75.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds