Wall clock time and date at job start Tue Mar 31 2020 23:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47395 * 2 1 4 4 C 1.46759 * 124.34473 * 90.00288 * 3 2 1 5 5 C 1.54484 * 105.47024 * 197.01918 * 4 3 2 6 6 H 1.09004 * 110.96829 * 92.69984 * 5 4 3 7 7 C 1.50698 * 110.97116 * 216.46405 * 5 4 3 8 8 O 1.21281 * 120.00134 * 353.83446 * 7 5 4 9 9 N 1.34774 * 120.00243 * 173.82991 * 7 5 4 10 10 C 1.46495 * 120.00422 * 174.88259 * 9 7 5 11 11 C 1.53004 * 109.49855 * 302.89260 * 10 9 7 12 12 O 1.42905 * 109.46992 * 300.67921 * 11 10 9 13 13 C 1.53040 * 109.49584 * 62.95284 * 10 9 7 14 14 C 1.53041 * 109.53704 * 58.58687 * 13 10 9 15 15 C 1.53198 * 109.30912 * 61.36806 * 14 13 10 16 16 N 1.46923 * 108.77353 * 305.36238 * 15 14 13 17 17 C 1.36938 * 120.62913 * 233.63183 * 16 15 14 18 18 H 1.08003 * 119.99910 * 31.68186 * 17 16 15 19 19 C 1.38811 * 120.00218 * 211.67807 * 17 16 15 20 20 N 1.31618 * 119.99754 * 11.01186 * 19 17 16 21 21 Si 1.86797 * 120.00129 * 191.00494 * 19 17 16 22 22 H 1.48504 * 109.46943 * 60.00395 * 21 19 17 23 23 H 1.48503 * 109.46746 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47507 * 300.00220 * 21 19 17 25 25 C 1.46925 * 118.74073 * 53.61395 * 16 15 14 26 26 C 1.54625 * 101.76596 * 334.58791 * 5 4 3 27 27 C 1.34651 * 124.31439 * 269.87465 * 3 2 1 28 28 O 1.21286 * 125.07286 * 359.64947 * 27 3 2 29 29 H 1.08996 * 109.47189 * 59.99833 * 1 2 3 30 30 H 1.08997 * 109.47383 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46791 * 299.99678 * 1 2 3 32 32 H 1.09002 * 109.47139 * 239.99930 * 2 1 3 33 33 H 1.08996 * 109.47189 * 120.00167 * 2 1 3 34 34 H 1.09000 * 110.24832 * 78.01903 * 4 3 2 35 35 H 1.09000 * 110.25087 * 316.01724 * 4 3 2 36 36 H 0.97005 * 119.99750 * 354.89068 * 9 7 5 37 37 H 1.08998 * 109.47260 * 60.67702 * 11 10 9 38 38 H 1.08996 * 109.47032 * 180.68344 * 11 10 9 39 39 H 0.96696 * 113.99988 * 179.97438 * 12 11 10 40 40 H 1.09007 * 109.45948 * 178.60822 * 13 10 9 41 41 H 1.09003 * 109.45885 * 298.57957 * 13 10 9 42 42 H 1.09006 * 109.49397 * 181.31613 * 14 13 10 43 43 H 1.08992 * 109.49620 * 301.41457 * 14 13 10 44 44 H 1.09001 * 109.58843 * 65.15166 * 15 14 13 45 45 H 1.09000 * 109.58299 * 185.43065 * 15 14 13 46 46 H 0.96999 * 120.00212 * 180.02562 * 20 19 17 47 47 H 1.09000 * 109.58938 * 186.60343 * 25 16 15 48 48 H 1.08994 * 109.58661 * 66.17355 * 25 16 15 49 49 H 1.08996 * 110.49429 * 143.47603 * 26 5 4 50 50 H 1.09009 * 110.48116 * 265.98690 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1618 1.2117 5 6 2.3530 3.6345 0.7488 6 1 1.3782 4.1126 0.8449 7 6 3.4038 4.3985 1.5124 8 8 3.9866 3.8704 2.4356 9 7 3.6959 5.6687 1.1694 10 6 4.6347 6.4489 1.9795 11 6 4.1373 6.5050 3.4253 12 8 2.8424 7.1083 3.4605 13 6 6.0148 5.7888 1.9394 14 6 6.4986 5.7017 0.4901 15 6 6.6214 7.1148 -0.0888 16 7 5.3365 7.8074 0.0779 17 6 4.7098 8.3830 -0.9950 18 1 4.8180 7.9512 -1.9791 19 6 3.9356 9.5214 -0.8180 20 7 3.9744 10.1724 0.3253 21 14 2.8386 10.1296 -2.2023 22 1 1.8524 9.0758 -2.5516 23 1 2.1214 11.3538 -1.7639 24 1 3.6705 10.4430 -3.3918 25 6 4.7364 7.8704 1.4175 26 6 2.7504 3.4821 -0.7378 27 6 2.2738 2.0960 -1.1122 28 8 2.1395 1.6906 -2.2473 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.2502 1.8637 1.6429 35 1 1.4934 2.0264 1.9384 36 1 3.2845 6.0665 0.3861 37 1 4.0782 5.4941 3.8287 38 1 4.8298 7.0957 4.0250 39 1 2.4643 7.1765 4.3479 40 1 6.7187 6.3832 2.5221 41 1 5.9501 4.7859 2.3613 42 1 7.4712 5.2105 0.4601 43 1 5.7826 5.1284 -0.0986 44 1 7.4021 7.6603 0.4415 45 1 6.8723 7.0553 -1.1478 46 1 3.4331 10.9677 0.4492 47 1 3.7409 8.3094 1.3518 48 1 5.3633 8.4775 2.0706 49 1 2.2491 4.2351 -1.3458 50 1 3.8317 3.5579 -0.8532 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484437865.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:34 Heat of formation + Delta-G solvation = -96.481309 kcal Electronic energy + Delta-G solvation = -32208.597812 eV Core-core repulsion = 28043.337377 eV Total energy + Delta-G solvation = -4165.260435 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.87809 -39.68779 -37.60818 -36.26570 -35.92448 -34.04820 -33.75812 -32.55317 -30.59863 -29.94690 -29.26100 -27.73909 -25.48285 -25.10062 -24.18987 -22.93935 -22.22807 -20.86207 -19.87937 -19.44333 -18.64823 -17.46651 -17.05760 -16.85733 -16.74404 -15.87401 -15.34809 -15.32664 -14.79223 -14.59458 -14.16157 -14.12293 -13.95593 -13.86379 -13.68964 -13.38972 -13.15092 -13.11037 -12.90731 -12.50271 -12.45813 -12.33713 -12.15960 -11.91439 -11.62620 -11.45342 -11.42539 -11.23001 -11.18446 -10.94279 -10.76840 -10.51504 -10.25138 -10.03956 -9.99911 -9.81717 -9.65032 -9.58808 -9.03553 -8.83575 -8.55410 -8.44819 -6.68322 -5.84488 -3.33800 2.51354 2.80738 2.90331 3.34660 3.41135 3.41690 3.54646 4.20641 4.33256 4.43294 4.61723 4.77114 4.80177 4.89645 4.96059 5.13619 5.21215 5.29773 5.34987 5.39434 5.46659 5.54417 5.57376 5.60535 5.68371 5.71440 5.78413 5.80000 5.85517 5.91693 5.92964 6.07498 6.26128 6.35796 6.41040 6.46581 6.49072 6.61513 6.80057 6.94737 6.97052 7.02969 7.26924 7.62767 7.74705 8.01301 8.07479 8.09619 8.41589 8.61119 9.15183 9.76473 10.35288 11.22974 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011297 B = 0.004054 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.905144 B = 6905.545865 C = 7898.019438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 N -0.622 5.622 4 C 0.121 3.879 5 C -0.124 4.124 6 H 0.116 0.884 7 C 0.526 3.474 8 O -0.553 6.553 9 N -0.679 5.679 10 C 0.155 3.845 11 C 0.068 3.932 12 O -0.560 6.560 13 C -0.120 4.120 14 C -0.127 4.127 15 C 0.142 3.858 16 N -0.590 5.590 17 C -0.262 4.262 18 H 0.065 0.935 19 C 0.010 3.990 20 N -0.898 5.898 21 Si 0.902 3.098 22 H -0.282 1.282 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.177 3.823 26 C -0.146 4.146 27 C 0.522 3.478 28 O -0.532 6.532 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.410 0.590 37 H 0.059 0.941 38 H 0.044 0.956 39 H 0.367 0.633 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.017 0.983 45 H 0.053 0.947 46 H 0.256 0.744 47 H 0.104 0.896 48 H 0.030 0.970 49 H 0.113 0.887 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.733 -14.747 6.223 16.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.357 5.357 4 C -0.002 4.002 5 C -0.146 4.146 6 H 0.134 0.866 7 C 0.310 3.690 8 O -0.433 6.433 9 N -0.328 5.328 10 C 0.067 3.933 11 C -0.011 4.011 12 O -0.363 6.363 13 C -0.158 4.158 14 C -0.167 4.167 15 C 0.015 3.985 16 N -0.312 5.312 17 C -0.392 4.392 18 H 0.083 0.917 19 C -0.189 4.189 20 N -0.541 5.541 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.050 3.950 26 C -0.187 4.187 27 C 0.310 3.690 28 O -0.408 6.408 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.246 0.754 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.212 0.788 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.035 0.965 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.122 0.878 48 H 0.048 0.952 49 H 0.131 0.869 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.395 -15.156 5.650 16.528 hybrid contribution -0.853 0.671 -0.263 1.117 sum -4.247 -14.485 5.386 16.027 Atomic orbital electron populations 1.22165 0.95809 1.02246 1.02569 1.21317 0.94314 0.81214 1.03113 1.48438 1.66027 1.13902 1.07367 1.21934 1.03098 0.88478 0.86653 1.22247 1.00825 0.96264 0.95246 0.86625 1.19878 0.82827 0.82258 0.83989 1.90589 1.52804 1.68888 1.31064 1.45849 1.44868 1.11817 1.30274 1.21273 0.87567 0.95889 0.88521 1.22576 0.84424 0.96932 0.97198 1.86581 1.33078 1.83901 1.32753 1.21747 0.95166 1.01193 0.97733 1.21917 0.99402 0.99478 0.95875 1.20979 0.88832 0.90409 0.98233 1.44001 1.18466 1.63617 1.05156 1.19107 1.26075 1.05292 0.88693 0.91737 1.25174 1.01271 0.95556 0.96943 1.69942 1.41523 1.18527 1.24150 0.86389 0.80576 0.78101 0.81739 1.20860 1.21645 1.20891 1.21000 1.01202 0.87492 0.85270 1.22363 1.04666 0.96258 0.95385 1.20892 0.76148 0.87633 0.84313 1.90719 1.53500 1.75631 1.20982 0.92193 0.91493 0.92351 0.90068 0.90316 0.89141 0.90103 0.75382 0.92242 0.93748 0.78750 0.92130 0.91066 0.93184 0.92582 0.96533 0.92855 0.93406 0.87760 0.95170 0.86886 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.24 37.16 0.38 -1.00 16 2 C 0.12 1.12 6.66 -4.04 -0.03 1.09 16 3 N -0.62 -7.04 2.94 -172.34 -0.51 -7.55 16 4 C 0.12 1.28 6.66 -3.12 -0.02 1.26 16 5 C -0.12 -1.45 3.55 -90.14 -0.32 -1.77 16 6 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 7 C 0.53 7.72 6.48 -10.99 -0.07 7.65 16 8 O -0.55 -9.06 11.83 5.56 0.07 -8.99 16 9 N -0.68 -11.17 4.00 -47.50 -0.19 -11.36 16 10 C 0.16 2.76 0.45 -131.70 -0.06 2.70 16 11 C 0.07 1.10 5.68 37.16 0.21 1.31 16 12 O -0.56 -9.09 12.98 -35.23 -0.46 -9.55 16 13 C -0.12 -2.02 4.52 -26.69 -0.12 -2.14 16 14 C -0.13 -2.17 5.93 -26.61 -0.16 -2.33 16 15 C 0.14 2.82 6.51 -3.71 -0.02 2.80 16 16 N -0.59 -13.53 2.85 -172.32 -0.49 -14.02 16 17 C -0.26 -6.64 9.58 -15.06 -0.14 -6.78 16 18 H 0.06 1.62 7.85 -52.48 -0.41 1.21 16 19 C 0.01 0.27 5.04 -17.43 -0.09 0.18 16 20 N -0.90 -24.71 11.10 55.49 0.62 -24.10 16 21 Si 0.90 20.74 29.57 -169.99 -5.03 15.71 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 25 C 0.18 3.89 3.75 -3.71 -0.01 3.87 16 26 C -0.15 -1.82 6.30 -26.74 -0.17 -1.98 16 27 C 0.52 7.26 8.03 -10.76 -0.09 7.18 16 28 O -0.53 -9.28 17.60 5.55 0.10 -9.18 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 1.05 7.06 -51.93 -0.37 0.68 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.41 7.18 8.36 -40.82 -0.34 6.84 16 37 H 0.06 0.96 6.16 -51.93 -0.32 0.64 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.37 4.17 9.12 45.56 0.42 4.59 16 40 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 41 H 0.07 1.21 6.26 -51.93 -0.32 0.89 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.97 7.53 -51.93 -0.39 0.58 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.05 1.05 7.94 -51.93 -0.41 0.64 16 46 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 47 H 0.10 2.63 5.88 -51.93 -0.31 2.33 16 48 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 50 H 0.11 1.43 7.89 -51.92 -0.41 1.02 16 LS Contribution 391.57 15.07 5.90 5.90 Total: -1.00 -31.25 391.57 -8.19 -39.44 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -7.49 Total: 11.66 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -0.71 Total: 12.04 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: -0.57 Total: -57.03 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.29 Total: -27.72 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.25 -8.19 -39.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484437865.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.046 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds