Wall clock time and date at job start Tue Mar 31 2020 23:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47395 * 2 1 4 4 C 1.46759 * 124.34473 * 90.00288 * 3 2 1 5 5 C 1.54484 * 105.47024 * 197.01918 * 4 3 2 6 6 H 1.09004 * 110.96829 * 92.69984 * 5 4 3 7 7 C 1.50698 * 110.97116 * 216.46405 * 5 4 3 8 8 O 1.21281 * 120.00134 * 353.83446 * 7 5 4 9 9 N 1.34774 * 120.00243 * 173.82991 * 7 5 4 10 10 C 1.46495 * 120.00422 * 174.88259 * 9 7 5 11 11 C 1.53004 * 109.49855 * 302.89260 * 10 9 7 12 12 O 1.42905 * 109.46992 * 300.67921 * 11 10 9 13 13 C 1.53040 * 109.49584 * 62.95284 * 10 9 7 14 14 C 1.53041 * 109.53704 * 58.58687 * 13 10 9 15 15 C 1.53198 * 109.30912 * 61.36806 * 14 13 10 16 16 N 1.46923 * 108.77353 * 305.36238 * 15 14 13 17 17 C 1.36938 * 120.62913 * 233.63183 * 16 15 14 18 18 H 1.08003 * 119.99910 * 31.68186 * 17 16 15 19 19 C 1.38811 * 120.00218 * 211.67807 * 17 16 15 20 20 N 1.31618 * 119.99754 * 11.01186 * 19 17 16 21 21 Si 1.86797 * 120.00129 * 191.00494 * 19 17 16 22 22 H 1.48504 * 109.46943 * 60.00395 * 21 19 17 23 23 H 1.48503 * 109.46746 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47507 * 300.00220 * 21 19 17 25 25 C 1.46925 * 118.74073 * 53.61395 * 16 15 14 26 26 C 1.54625 * 101.76596 * 334.58791 * 5 4 3 27 27 C 1.34651 * 124.31439 * 269.87465 * 3 2 1 28 28 O 1.21286 * 125.07286 * 359.64947 * 27 3 2 29 29 H 1.08996 * 109.47189 * 59.99833 * 1 2 3 30 30 H 1.08997 * 109.47383 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46791 * 299.99678 * 1 2 3 32 32 H 1.09002 * 109.47139 * 239.99930 * 2 1 3 33 33 H 1.08996 * 109.47189 * 120.00167 * 2 1 3 34 34 H 1.09000 * 110.24832 * 78.01903 * 4 3 2 35 35 H 1.09000 * 110.25087 * 316.01724 * 4 3 2 36 36 H 0.97005 * 119.99750 * 354.89068 * 9 7 5 37 37 H 1.08998 * 109.47260 * 60.67702 * 11 10 9 38 38 H 1.08996 * 109.47032 * 180.68344 * 11 10 9 39 39 H 0.96696 * 113.99988 * 179.97438 * 12 11 10 40 40 H 1.09007 * 109.45948 * 178.60822 * 13 10 9 41 41 H 1.09003 * 109.45885 * 298.57957 * 13 10 9 42 42 H 1.09006 * 109.49397 * 181.31613 * 14 13 10 43 43 H 1.08992 * 109.49620 * 301.41457 * 14 13 10 44 44 H 1.09001 * 109.58843 * 65.15166 * 15 14 13 45 45 H 1.09000 * 109.58299 * 185.43065 * 15 14 13 46 46 H 0.96999 * 120.00212 * 180.02562 * 20 19 17 47 47 H 1.09000 * 109.58938 * 186.60343 * 25 16 15 48 48 H 1.08994 * 109.58661 * 66.17355 * 25 16 15 49 49 H 1.08996 * 110.49429 * 143.47603 * 26 5 4 50 50 H 1.09009 * 110.48116 * 265.98690 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1618 1.2117 5 6 2.3530 3.6345 0.7488 6 1 1.3782 4.1126 0.8449 7 6 3.4038 4.3985 1.5124 8 8 3.9866 3.8704 2.4356 9 7 3.6959 5.6687 1.1694 10 6 4.6347 6.4489 1.9795 11 6 4.1373 6.5050 3.4253 12 8 2.8424 7.1083 3.4605 13 6 6.0148 5.7888 1.9394 14 6 6.4986 5.7017 0.4901 15 6 6.6214 7.1148 -0.0888 16 7 5.3365 7.8074 0.0779 17 6 4.7098 8.3830 -0.9950 18 1 4.8180 7.9512 -1.9791 19 6 3.9356 9.5214 -0.8180 20 7 3.9744 10.1724 0.3253 21 14 2.8386 10.1296 -2.2023 22 1 1.8524 9.0758 -2.5516 23 1 2.1214 11.3538 -1.7639 24 1 3.6705 10.4430 -3.3918 25 6 4.7364 7.8704 1.4175 26 6 2.7504 3.4821 -0.7378 27 6 2.2738 2.0960 -1.1122 28 8 2.1395 1.6906 -2.2473 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.2502 1.8637 1.6429 35 1 1.4934 2.0264 1.9384 36 1 3.2845 6.0665 0.3861 37 1 4.0782 5.4941 3.8287 38 1 4.8298 7.0957 4.0250 39 1 2.4643 7.1765 4.3479 40 1 6.7187 6.3832 2.5221 41 1 5.9501 4.7859 2.3613 42 1 7.4712 5.2105 0.4601 43 1 5.7826 5.1284 -0.0986 44 1 7.4021 7.6603 0.4415 45 1 6.8723 7.0553 -1.1478 46 1 3.4331 10.9677 0.4492 47 1 3.7409 8.3094 1.3518 48 1 5.3633 8.4775 2.0706 49 1 2.2491 4.2351 -1.3458 50 1 3.8317 3.5579 -0.8532 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484437865.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:33 Heat of formation + Delta-G solvation = -118.896923 kcal Electronic energy + Delta-G solvation = -32209.569826 eV Core-core repulsion = 28043.337377 eV Total energy + Delta-G solvation = -4166.232449 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.98109 -40.93304 -38.98305 -37.43241 -37.24844 -35.34981 -34.95232 -34.09259 -32.03671 -31.49260 -30.32296 -28.72788 -27.28600 -26.59493 -25.11293 -23.97879 -23.78049 -22.28828 -21.20945 -20.44289 -19.99654 -18.82136 -18.45265 -18.10466 -17.97033 -17.03898 -16.78876 -16.45685 -16.19898 -15.96846 -15.74891 -15.22950 -15.10026 -15.05101 -14.75146 -14.68664 -14.51187 -14.32049 -14.15961 -14.07110 -13.76364 -13.42106 -13.31325 -13.05122 -12.87911 -12.79784 -12.68326 -12.52543 -12.45549 -12.36318 -12.22070 -12.00314 -11.94914 -11.64790 -11.45877 -11.21221 -11.09435 -10.88261 -10.50833 -10.33922 -9.80736 -9.72859 -8.57432 -7.81845 -5.32940 1.44449 1.51549 1.52810 1.58611 1.70506 1.92023 2.35344 2.54105 3.21087 3.34087 3.37197 3.38993 3.68449 3.77474 3.87733 4.09019 4.13389 4.16941 4.25137 4.29413 4.34363 4.40985 4.48382 4.53157 4.56408 4.59355 4.67528 4.77203 4.83766 4.85261 4.89119 4.94792 4.95221 4.99087 5.03167 5.16192 5.24953 5.27623 5.37479 5.52637 5.56095 5.67884 5.80142 5.81781 6.01017 6.46294 6.78842 6.99323 7.05578 7.20404 7.35781 7.88742 8.43055 9.22947 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011297 B = 0.004054 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.905144 B = 6905.545865 C = 7898.019438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.614 5.614 4 C 0.127 3.873 5 C -0.114 4.114 6 H 0.134 0.866 7 C 0.531 3.469 8 O -0.566 6.566 9 N -0.684 5.684 10 C 0.160 3.840 11 C 0.075 3.925 12 O -0.578 6.578 13 C -0.114 4.114 14 C -0.116 4.116 15 C 0.139 3.861 16 N -0.603 5.603 17 C -0.262 4.262 18 H 0.066 0.934 19 C -0.037 4.037 20 N -0.928 5.928 21 Si 0.959 3.041 22 H -0.274 1.274 23 H -0.299 1.299 24 H -0.282 1.282 25 C 0.193 3.807 26 C -0.142 4.142 27 C 0.516 3.484 28 O -0.575 6.575 29 H 0.036 0.964 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.404 0.596 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.388 0.612 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.053 0.947 44 H 0.012 0.988 45 H 0.052 0.948 46 H 0.249 0.751 47 H 0.071 0.929 48 H 0.001 0.999 49 H 0.115 0.885 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.280 -16.702 7.031 18.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.006 4.006 3 N -0.348 5.348 4 C 0.004 3.996 5 C -0.135 4.135 6 H 0.151 0.849 7 C 0.317 3.683 8 O -0.446 6.446 9 N -0.333 5.333 10 C 0.072 3.928 11 C -0.004 4.004 12 O -0.385 6.385 13 C -0.152 4.152 14 C -0.155 4.155 15 C 0.013 3.987 16 N -0.326 5.326 17 C -0.392 4.392 18 H 0.084 0.916 19 C -0.233 4.233 20 N -0.573 5.573 21 Si 0.788 3.212 22 H -0.199 1.199 23 H -0.225 1.225 24 H -0.208 1.208 25 C 0.067 3.933 26 C -0.182 4.182 27 C 0.305 3.695 28 O -0.455 6.455 29 H 0.055 0.945 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.104 0.896 35 H 0.125 0.875 36 H 0.239 0.761 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.237 0.763 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.030 0.970 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.089 0.911 48 H 0.019 0.981 49 H 0.133 0.867 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.940 -17.158 6.504 18.768 hybrid contribution -0.631 1.255 -0.474 1.483 sum -4.571 -15.903 6.030 17.612 Atomic orbital electron populations 1.22113 0.94830 1.03381 1.01825 1.21561 0.95106 0.80039 1.03913 1.48553 1.64740 1.14609 1.06859 1.21979 1.03886 0.87223 0.86489 1.22197 1.00417 0.96844 0.94087 0.84868 1.20197 0.82847 0.81486 0.83776 1.90583 1.53350 1.68955 1.31736 1.45815 1.44911 1.12490 1.30036 1.21031 0.88861 0.93514 0.89422 1.22476 0.84645 0.97353 0.95975 1.86535 1.33085 1.83942 1.34928 1.21705 0.94542 1.01336 0.97655 1.21791 1.00740 0.97342 0.95614 1.21087 0.87311 0.91781 0.98472 1.44190 1.19687 1.63740 1.04942 1.19369 1.25496 1.04926 0.89405 0.91623 1.25778 1.02838 0.96011 0.98702 1.70105 1.42548 1.18863 1.25831 0.85484 0.79103 0.77296 0.79341 1.19921 1.22546 1.20764 1.20619 0.98481 0.89663 0.84540 1.22302 1.04281 0.95711 0.95948 1.21091 0.75914 0.88262 0.84239 1.90692 1.55618 1.76530 1.22693 0.94489 0.89506 0.91410 0.91249 0.87548 0.89636 0.87483 0.76088 0.91544 0.93251 0.76321 0.91865 0.90397 0.90707 0.92798 0.97044 0.92909 0.94208 0.91069 0.98119 0.86713 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 10.24 71.98 0.74 -1.55 16 2 C 0.11 1.84 6.66 86.38 0.58 2.42 16 3 N -0.61 -12.63 2.94 -817.63 -2.40 -15.03 16 4 C 0.13 2.29 6.66 86.83 0.58 2.87 16 5 C -0.11 -2.40 3.55 -10.48 -0.04 -2.44 16 6 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 7 C 0.53 14.49 6.48 87.66 0.57 15.06 16 8 O -0.57 -17.05 11.83 -3.03 -0.04 -17.09 16 9 N -0.68 -21.77 4.00 -422.58 -1.69 -23.46 16 10 C 0.16 5.57 0.45 3.68 0.00 5.57 16 11 C 0.07 2.33 5.68 71.98 0.41 2.74 16 12 O -0.58 -18.23 12.98 -148.98 -1.93 -20.16 16 13 C -0.11 -3.66 4.52 30.62 0.14 -3.52 16 14 C -0.12 -3.74 5.93 30.67 0.18 -3.56 16 15 C 0.14 5.46 6.51 86.36 0.56 6.03 16 16 N -0.60 -27.84 2.85 -699.10 -1.99 -29.83 16 17 C -0.26 -13.34 9.58 84.03 0.80 -12.54 16 18 H 0.07 3.28 7.85 -2.91 -0.02 3.26 16 19 C -0.04 -1.94 5.04 84.86 0.43 -1.51 16 20 N -0.93 -52.37 11.10 21.65 0.24 -52.13 16 21 Si 0.96 43.02 29.57 68.60 2.03 45.05 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 C 0.19 8.64 3.75 86.36 0.32 8.96 16 26 C -0.14 -3.36 6.30 30.59 0.19 -3.16 16 27 C 0.52 13.90 8.03 87.86 0.71 14.61 16 28 O -0.58 -20.14 17.60 -3.05 -0.05 -20.19 16 29 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.07 1.30 7.93 -2.39 -0.02 1.29 16 33 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.72 7.06 -2.39 -0.02 1.70 16 35 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.40 13.95 8.36 -92.70 -0.77 13.17 16 37 H 0.07 2.00 6.16 -2.39 -0.01 1.99 16 38 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.39 8.25 9.12 -74.06 -0.68 7.58 16 40 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 41 H 0.08 2.46 6.26 -2.39 -0.01 2.44 16 42 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 43 H 0.05 1.78 7.53 -2.39 -0.02 1.76 16 44 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.05 2.05 7.94 -2.39 -0.02 2.03 16 46 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 47 H 0.07 3.69 5.88 -2.39 -0.01 3.67 16 48 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 49 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 50 H 0.10 2.61 7.89 -2.38 -0.02 2.59 16 Total: -1.00 -68.10 391.57 -0.16 -68.26 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: -0.49 Total: 34.61 kcal Atomic # 6 Polarization: 23.80 SS G_CDS: 6.17 Total: 29.97 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -5.84 Total: -120.45 kcal Atomic # 8 Polarization: -55.42 SS G_CDS: -2.02 Total: -57.44 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -68.10 -0.16 -68.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484437865.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.635 kcal (2) G-P(sol) polarization free energy of solvation -68.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds