Wall clock time and date at job start Tue Mar 31 2020 22:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00212 * 2 1 4 4 H 1.08998 * 109.47014 * 330.00516 * 3 2 1 5 5 C 1.53000 * 109.46733 * 90.00535 * 3 2 1 6 6 C 1.50704 * 109.47116 * 210.00104 * 3 2 1 7 7 O 1.21278 * 120.00072 * 354.99963 * 6 3 2 8 8 N 1.34776 * 119.99700 * 175.00447 * 6 3 2 9 9 C 1.46499 * 119.99572 * 180.02562 * 8 6 3 10 10 H 1.09000 * 115.57380 * 350.73013 * 9 8 6 11 11 C 1.53060 * 117.50505 * 136.46688 * 9 8 6 12 12 C 1.52723 * 59.94454 * 107.46356 * 11 9 8 13 13 C 1.53213 * 117.84585 * 252.25354 * 12 11 9 14 14 C 1.53259 * 108.76886 * 162.90522 * 13 12 11 15 15 N 1.47192 * 109.24367 * 55.51868 * 14 13 12 16 16 C 1.46907 * 110.93560 * 170.88383 * 15 14 13 17 17 C 1.50697 * 109.47042 * 294.76456 * 16 15 14 18 18 O 1.21293 * 120.00386 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99617 * 179.97438 * 17 16 15 20 20 C 1.37106 * 119.99582 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00442 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99403 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00581 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99542 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47160 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46965 * 120.00207 * 24 22 20 27 27 H 1.48507 * 109.47087 * 239.99780 * 24 22 20 28 28 C 1.46808 * 111.66067 * 295.27572 * 15 14 13 29 29 C 1.53222 * 117.84712 * 107.74625 * 12 11 9 30 30 H 1.08996 * 109.46864 * 59.99103 * 1 2 3 31 31 H 1.08997 * 109.47485 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46455 * 299.99548 * 1 2 3 33 33 H 1.08998 * 109.47012 * 299.99677 * 5 3 2 34 34 H 1.08998 * 109.47387 * 60.00209 * 5 3 2 35 35 H 1.09000 * 109.47232 * 180.02562 * 5 3 2 36 36 H 0.96996 * 120.00281 * 359.97438 * 8 6 3 37 37 H 1.08993 * 117.50266 * 359.97438 * 11 9 8 38 38 H 1.09002 * 117.50311 * 214.94204 * 11 9 8 39 39 H 1.09002 * 109.61357 * 282.73438 * 13 12 11 40 40 H 1.09004 * 109.61114 * 43.07961 * 13 12 11 41 41 H 1.08994 * 109.48034 * 175.68134 * 14 13 12 42 42 H 1.09004 * 109.47507 * 295.70053 * 14 13 12 43 43 H 1.08993 * 109.46677 * 54.76575 * 16 15 14 44 44 H 1.09000 * 109.46910 * 174.76871 * 16 15 14 45 45 H 0.96996 * 120.00221 * 0.02562 * 19 17 16 46 46 H 0.96998 * 120.00097 * 180.02562 * 23 22 20 47 47 H 1.08992 * 109.47794 * 304.84519 * 28 15 14 48 48 H 1.09007 * 109.48006 * 184.83593 * 28 15 14 49 49 H 1.08998 * 109.60965 * 316.75057 * 29 12 11 50 50 H 1.08999 * 109.61234 * 77.09611 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5137 5 6 2.2178 1.7712 1.4425 6 6 3.3387 1.2638 -0.7104 7 8 3.7897 0.2044 -1.0914 8 7 4.0255 2.4039 -0.9223 9 6 5.3166 2.3635 -1.6134 10 1 5.7277 1.3686 -1.7846 11 6 5.5825 3.4310 -2.6776 12 6 6.3029 3.4958 -1.3326 13 6 5.8765 4.5859 -0.3441 14 6 6.3941 4.2169 1.0505 15 7 7.8507 4.0145 0.9895 16 6 8.4179 3.8723 2.3372 17 6 8.2489 5.1656 3.0922 18 8 7.7087 6.1123 2.5602 19 7 8.6971 5.2697 4.3590 20 6 8.5429 6.4461 5.0460 21 1 8.0627 7.2894 4.5721 22 6 9.0045 6.5533 6.3522 23 7 9.5893 5.5274 6.9288 24 14 8.7950 8.1564 7.2882 25 1 8.1113 9.1498 6.4217 26 1 7.9781 7.9161 8.5048 27 1 10.1287 8.6773 7.6824 28 6 8.2033 2.8655 0.1464 29 6 7.7958 3.1520 -1.3030 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 1.2570 1.8013 1.9564 34 1 2.8831 1.0773 1.9563 35 1 2.6608 2.7671 1.4426 36 1 3.6647 3.2512 -0.6179 37 1 4.7966 4.1629 -2.8637 38 1 6.1683 3.1382 -3.5490 39 1 6.2995 5.5429 -0.6499 40 1 4.7889 4.6564 -0.3238 41 1 6.1636 5.0217 1.7484 42 1 5.9138 3.2972 1.3847 43 1 7.9005 3.0723 2.8665 44 1 9.4783 3.6317 2.2616 45 1 9.1287 4.5125 4.7845 46 1 9.9112 5.6022 7.8408 47 1 7.6792 1.9788 0.5028 48 1 9.2790 2.6957 0.1946 49 1 7.9803 2.2699 -1.9162 50 1 8.3725 3.9927 -1.6886 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490586918.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:09 Heat of formation + Delta-G solvation = -84.106635 kcal Electronic energy + Delta-G solvation = -30258.708379 eV Core-core repulsion = 26093.984550 eV Total energy + Delta-G solvation = -4164.723828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.57078 -39.45038 -38.30167 -37.61968 -36.08282 -33.94172 -33.59835 -31.65625 -31.28042 -30.81050 -29.99101 -27.17107 -26.43168 -24.81675 -24.12737 -23.30037 -22.18684 -21.52184 -20.61403 -19.19640 -18.88832 -17.86142 -17.64753 -17.19173 -16.26253 -15.99535 -15.69003 -15.51393 -14.96510 -14.89479 -14.76934 -14.63191 -14.16478 -13.89956 -13.79693 -13.72897 -13.50508 -13.15298 -12.93229 -12.77298 -12.75340 -12.37360 -12.29943 -12.20254 -11.85286 -11.69099 -11.53734 -11.49229 -11.32442 -11.10062 -11.02742 -10.70528 -10.39239 -10.35954 -10.31360 -10.23006 -9.91304 -9.70627 -9.47091 -8.84137 -8.39656 -7.96977 -7.80064 -6.41830 -3.82600 2.31000 2.51567 3.15509 3.26097 3.32893 3.59525 3.67124 3.90831 4.02388 4.24466 4.30707 4.48434 4.53768 4.58575 4.60483 4.68702 4.87014 4.91967 4.98360 5.06738 5.19967 5.24718 5.31016 5.32588 5.34332 5.40702 5.48808 5.55323 5.60097 5.65382 5.70556 5.78556 5.81817 5.88825 5.91017 6.02327 6.06988 6.16658 6.25251 6.29508 6.40911 6.47879 6.64666 7.22206 7.34293 7.47302 7.55147 7.97164 8.06865 8.61996 9.18164 9.55061 10.06663 10.76027 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.002546 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.711373 B =10995.279511 C =12449.528963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.071 3.929 4 H 0.086 0.914 5 C -0.173 4.173 6 C 0.518 3.482 7 O -0.519 6.519 8 N -0.697 5.697 9 C 0.084 3.916 10 H 0.135 0.865 11 C -0.183 4.183 12 C -0.120 4.120 13 C -0.072 4.072 14 C 0.058 3.942 15 N -0.515 5.515 16 C 0.046 3.954 17 C 0.445 3.555 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.058 3.942 29 C -0.074 4.074 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.401 0.599 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.104 0.896 42 H 0.020 0.980 43 H 0.045 0.955 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.030 0.970 48 H 0.074 0.926 49 H 0.067 0.933 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.413 -8.287 -15.431 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.009 3.991 4 H 0.104 0.896 5 C -0.230 4.230 6 C 0.303 3.697 7 O -0.393 6.393 8 N -0.349 5.349 9 C -0.021 4.021 10 H 0.153 0.847 11 C -0.222 4.222 12 C -0.121 4.121 13 C -0.110 4.110 14 C -0.069 4.069 15 N -0.240 5.240 16 C -0.085 4.085 17 C 0.230 3.770 18 O -0.462 6.462 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.071 4.071 29 C -0.112 4.112 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.238 0.762 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.122 0.878 42 H 0.038 0.962 43 H 0.063 0.937 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.048 0.952 48 H 0.093 0.907 49 H 0.085 0.915 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.088 -8.226 -16.067 22.296 hybrid contribution -0.505 0.207 1.366 1.471 sum -13.593 -8.019 -14.701 21.568 Atomic orbital electron populations 1.22894 0.80522 1.03328 1.00083 1.88057 1.19722 1.25046 1.94940 1.21925 0.93248 0.86950 0.96950 0.89591 1.22252 1.03711 1.02358 0.94706 1.20379 0.86143 0.83964 0.79176 1.90714 1.69129 1.29683 1.49808 1.45350 1.20689 1.09489 1.59390 1.21784 0.85073 0.96595 0.98681 0.84741 1.23559 1.03247 1.01978 0.93399 1.22081 0.94236 0.98492 0.97307 1.21099 0.98514 0.97660 0.93702 1.22270 0.86697 1.00664 0.97278 1.61409 1.12070 1.39521 1.10973 1.21829 1.00544 0.96815 0.89327 1.19755 0.84859 0.89495 0.82867 1.90473 1.47375 1.39947 1.68399 1.41893 1.52436 1.14710 1.11158 1.19733 1.36186 0.91751 0.95009 0.87883 1.25262 0.96843 0.98864 0.97046 1.69621 1.39695 1.30378 1.14634 0.85818 0.77976 0.81453 0.79193 1.19239 1.20810 1.20754 1.22080 1.00428 0.91455 0.93099 1.21177 0.92220 1.01538 0.96253 0.93855 0.89075 0.93677 0.90986 0.90814 0.90672 0.76235 0.88542 0.87994 0.89949 0.92610 0.87837 0.96155 0.93679 0.89397 0.77507 0.91939 0.95195 0.90733 0.91486 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.29 16 2 O -0.36 -4.04 9.89 -55.09 -0.54 -4.59 16 3 C 0.07 0.66 3.13 -27.88 -0.09 0.57 16 4 H 0.09 0.55 7.79 -51.93 -0.40 0.15 16 5 C -0.17 -1.42 9.48 37.16 0.35 -1.06 16 6 C 0.52 6.22 7.18 -10.98 -0.08 6.14 16 7 O -0.52 -8.50 16.07 -14.30 -0.23 -8.73 16 8 N -0.70 -6.89 5.31 -53.89 -0.29 -7.18 16 9 C 0.08 0.89 6.11 -68.02 -0.42 0.48 16 10 H 0.13 1.62 7.40 -51.93 -0.38 1.24 16 11 C -0.18 -1.63 9.93 -26.84 -0.27 -1.90 16 12 C -0.12 -1.28 2.02 -154.55 -0.31 -1.59 16 13 C -0.07 -0.88 5.65 -26.49 -0.15 -1.03 16 14 C 0.06 0.91 5.14 -3.53 -0.02 0.89 16 15 N -0.52 -8.39 4.33 -235.57 -1.02 -9.42 16 16 C 0.05 0.82 5.45 -4.97 -0.03 0.80 16 17 C 0.44 10.29 7.42 -10.99 -0.08 10.21 16 18 O -0.58 -15.04 13.89 5.55 0.08 -14.96 16 19 N -0.57 -14.16 5.29 -10.96 -0.06 -14.22 16 20 C -0.30 -8.17 9.68 -14.93 -0.14 -8.32 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.45 13.05 55.50 0.72 -23.72 16 24 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 C 0.06 0.75 5.50 -3.74 -0.02 0.73 16 29 C -0.07 -0.81 5.87 -26.48 -0.16 -0.97 16 30 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.24 7.87 -51.93 -0.41 -0.16 16 33 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.54 7.93 -51.93 -0.41 0.12 16 36 H 0.40 3.13 6.64 -40.82 -0.27 2.86 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 0.55 6.19 -51.93 -0.32 0.23 16 41 H 0.10 1.96 5.74 -51.93 -0.30 1.66 16 42 H 0.02 0.31 8.12 -51.93 -0.42 -0.12 16 43 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 44 H 0.09 1.43 7.94 -51.93 -0.41 1.02 16 45 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 46 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 47 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 48 H 0.07 0.90 7.95 -51.93 -0.41 0.49 16 49 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 50 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 403.65 15.07 6.08 6.08 Total: -1.00 -33.99 403.65 -8.89 -42.88 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -8.21 Total: 11.33 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -0.41 Total: 6.70 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.64 Total: -54.54 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.70 Total: -28.28 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.99 -8.89 -42.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490586918.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.226 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds