Wall clock time and date at job start Tue Mar 31 2020 22:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00212 * 2 1 4 4 H 1.08998 * 109.47014 * 330.00516 * 3 2 1 5 5 C 1.53000 * 109.46733 * 90.00535 * 3 2 1 6 6 C 1.50704 * 109.47116 * 210.00104 * 3 2 1 7 7 O 1.21278 * 120.00072 * 354.99963 * 6 3 2 8 8 N 1.34776 * 119.99700 * 175.00447 * 6 3 2 9 9 C 1.46499 * 119.99572 * 180.02562 * 8 6 3 10 10 H 1.09000 * 115.57380 * 350.73013 * 9 8 6 11 11 C 1.53060 * 117.50505 * 136.46688 * 9 8 6 12 12 C 1.52723 * 59.94454 * 107.46356 * 11 9 8 13 13 C 1.53213 * 117.84585 * 252.25354 * 12 11 9 14 14 C 1.53259 * 108.76886 * 162.90522 * 13 12 11 15 15 N 1.47192 * 109.24367 * 55.51868 * 14 13 12 16 16 C 1.46907 * 110.93560 * 170.88383 * 15 14 13 17 17 C 1.50697 * 109.47042 * 294.76456 * 16 15 14 18 18 O 1.21293 * 120.00386 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99617 * 179.97438 * 17 16 15 20 20 C 1.37106 * 119.99582 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00442 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99403 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00581 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99542 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47160 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46965 * 120.00207 * 24 22 20 27 27 H 1.48507 * 109.47087 * 239.99780 * 24 22 20 28 28 C 1.46808 * 111.66067 * 295.27572 * 15 14 13 29 29 C 1.53222 * 117.84712 * 107.74625 * 12 11 9 30 30 H 1.08996 * 109.46864 * 59.99103 * 1 2 3 31 31 H 1.08997 * 109.47485 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46455 * 299.99548 * 1 2 3 33 33 H 1.08998 * 109.47012 * 299.99677 * 5 3 2 34 34 H 1.08998 * 109.47387 * 60.00209 * 5 3 2 35 35 H 1.09000 * 109.47232 * 180.02562 * 5 3 2 36 36 H 0.96996 * 120.00281 * 359.97438 * 8 6 3 37 37 H 1.08993 * 117.50266 * 359.97438 * 11 9 8 38 38 H 1.09002 * 117.50311 * 214.94204 * 11 9 8 39 39 H 1.09002 * 109.61357 * 282.73438 * 13 12 11 40 40 H 1.09004 * 109.61114 * 43.07961 * 13 12 11 41 41 H 1.08994 * 109.48034 * 175.68134 * 14 13 12 42 42 H 1.09004 * 109.47507 * 295.70053 * 14 13 12 43 43 H 1.08993 * 109.46677 * 54.76575 * 16 15 14 44 44 H 1.09000 * 109.46910 * 174.76871 * 16 15 14 45 45 H 0.96996 * 120.00221 * 0.02562 * 19 17 16 46 46 H 0.96998 * 120.00097 * 180.02562 * 23 22 20 47 47 H 1.08992 * 109.47794 * 304.84519 * 28 15 14 48 48 H 1.09007 * 109.48006 * 184.83593 * 28 15 14 49 49 H 1.08998 * 109.60965 * 316.75057 * 29 12 11 50 50 H 1.08999 * 109.61234 * 77.09611 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5137 5 6 2.2178 1.7712 1.4425 6 6 3.3387 1.2638 -0.7104 7 8 3.7897 0.2044 -1.0914 8 7 4.0255 2.4039 -0.9223 9 6 5.3166 2.3635 -1.6134 10 1 5.7277 1.3686 -1.7846 11 6 5.5825 3.4310 -2.6776 12 6 6.3029 3.4958 -1.3326 13 6 5.8765 4.5859 -0.3441 14 6 6.3941 4.2169 1.0505 15 7 7.8507 4.0145 0.9895 16 6 8.4179 3.8723 2.3372 17 6 8.2489 5.1656 3.0922 18 8 7.7087 6.1123 2.5602 19 7 8.6971 5.2697 4.3590 20 6 8.5429 6.4461 5.0460 21 1 8.0627 7.2894 4.5721 22 6 9.0045 6.5533 6.3522 23 7 9.5893 5.5274 6.9288 24 14 8.7950 8.1564 7.2882 25 1 8.1113 9.1498 6.4217 26 1 7.9781 7.9161 8.5048 27 1 10.1287 8.6773 7.6824 28 6 8.2033 2.8655 0.1464 29 6 7.7958 3.1520 -1.3030 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 1.2570 1.8013 1.9564 34 1 2.8831 1.0773 1.9563 35 1 2.6608 2.7671 1.4426 36 1 3.6647 3.2512 -0.6179 37 1 4.7966 4.1629 -2.8637 38 1 6.1683 3.1382 -3.5490 39 1 6.2995 5.5429 -0.6499 40 1 4.7889 4.6564 -0.3238 41 1 6.1636 5.0217 1.7484 42 1 5.9138 3.2972 1.3847 43 1 7.9005 3.0723 2.8665 44 1 9.4783 3.6317 2.2616 45 1 9.1287 4.5125 4.7845 46 1 9.9112 5.6022 7.8408 47 1 7.6792 1.9788 0.5028 48 1 9.2790 2.6957 0.1946 49 1 7.9803 2.2699 -1.9162 50 1 8.3725 3.9927 -1.6886 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490586918.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:08 Heat of formation + Delta-G solvation = -109.032194 kcal Electronic energy + Delta-G solvation = -30259.789232 eV Core-core repulsion = 26093.984550 eV Total energy + Delta-G solvation = -4165.804682 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.48144 -40.60049 -39.76491 -38.52500 -37.31521 -35.85912 -34.58892 -33.28153 -32.40754 -31.90682 -31.10484 -27.99435 -27.72748 -25.99497 -25.45865 -24.36789 -22.97804 -22.62099 -21.48416 -21.01441 -19.88049 -19.79342 -18.48230 -17.97718 -17.69934 -17.08887 -16.73990 -16.51185 -16.38384 -16.28002 -15.83063 -15.67030 -15.54648 -15.30918 -15.23363 -14.79702 -14.40009 -14.25072 -13.89114 -13.82134 -13.65312 -13.49329 -13.40616 -13.24691 -13.06377 -12.89200 -12.80116 -12.66348 -12.50775 -12.38649 -12.18108 -12.12186 -12.09134 -11.70674 -11.55197 -11.31836 -11.12086 -10.80316 -10.55903 -10.18342 -9.97632 -9.69218 -9.15389 -8.45143 -5.93592 1.37141 1.42239 1.42340 1.56408 1.75821 2.06882 2.29071 2.75173 2.90093 2.94996 3.21772 3.40278 3.54948 3.68333 3.74856 3.81554 3.86394 3.93052 4.00161 4.24942 4.29836 4.31317 4.42998 4.49916 4.52613 4.53973 4.56505 4.59456 4.60576 4.66534 4.73141 4.84058 4.84253 4.88403 4.95691 5.04330 5.07998 5.13467 5.17680 5.30138 5.37230 5.42669 5.45673 5.92738 6.02425 6.12443 6.28890 6.44462 6.62203 7.12557 7.14620 7.58362 8.13649 8.72662 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.002546 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.711373 B =10995.279511 C =12449.528963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.397 6.397 3 C 0.072 3.928 4 H 0.120 0.880 5 C -0.169 4.169 6 C 0.513 3.487 7 O -0.571 6.571 8 N -0.685 5.685 9 C 0.075 3.925 10 H 0.120 0.880 11 C -0.158 4.158 12 C -0.126 4.126 13 C -0.064 4.064 14 C 0.062 3.938 15 N -0.530 5.530 16 C 0.056 3.944 17 C 0.444 3.556 18 O -0.609 6.609 19 N -0.577 5.577 20 C -0.328 4.328 21 H 0.081 0.919 22 C -0.016 4.016 23 N -0.923 5.923 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.272 1.272 28 C 0.057 3.943 29 C -0.071 4.071 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.413 0.587 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.022 0.978 43 H 0.058 0.942 44 H 0.107 0.893 45 H 0.394 0.606 46 H 0.277 0.723 47 H 0.028 0.972 48 H 0.085 0.915 49 H 0.088 0.912 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.333 -7.952 -16.389 23.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.315 6.315 3 C 0.011 3.989 4 H 0.138 0.862 5 C -0.227 4.227 6 C 0.300 3.700 7 O -0.449 6.449 8 N -0.337 5.337 9 C -0.031 4.031 10 H 0.137 0.863 11 C -0.196 4.196 12 C -0.127 4.127 13 C -0.102 4.102 14 C -0.065 4.065 15 N -0.255 5.255 16 C -0.075 4.075 17 C 0.232 3.768 18 O -0.495 6.495 19 N -0.214 5.214 20 C -0.457 4.457 21 H 0.099 0.901 22 C -0.215 4.215 23 N -0.564 5.564 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.197 1.197 27 H -0.198 1.198 28 C -0.070 4.070 29 C -0.109 4.109 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.251 0.749 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.041 0.959 43 H 0.075 0.925 44 H 0.125 0.875 45 H 0.228 0.772 46 H 0.086 0.914 47 H 0.046 0.954 48 H 0.103 0.897 49 H 0.106 0.894 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.012 -7.878 -17.030 23.418 hybrid contribution -0.238 0.086 1.623 1.643 sum -14.250 -7.792 -15.406 22.386 Atomic orbital electron populations 1.23104 0.78545 1.04237 1.01532 1.88013 1.22033 1.26325 1.95152 1.22036 0.92292 0.87174 0.97356 0.86211 1.22244 1.04258 1.02128 0.94029 1.20975 0.86984 0.83507 0.78514 1.90684 1.70547 1.31511 1.52186 1.45281 1.20250 1.09581 1.58610 1.21740 0.85205 0.96145 1.00011 0.86272 1.23638 1.02656 1.00605 0.92704 1.21964 0.94181 0.98056 0.98543 1.21004 0.99782 0.97399 0.92045 1.22144 0.86647 0.99223 0.98535 1.61439 1.12447 1.41450 1.10177 1.21711 1.02106 0.93731 0.89941 1.20683 0.82939 0.90904 0.82299 1.90451 1.48253 1.41785 1.68979 1.41969 1.53263 1.14259 1.11932 1.19687 1.37682 0.92290 0.96057 0.90147 1.26046 0.96055 1.02086 0.97296 1.69687 1.39811 1.31828 1.15120 0.84877 0.78251 0.77424 0.77826 1.19601 1.19699 1.19771 1.22181 1.01137 0.90021 0.93663 1.21185 0.92351 1.02395 0.94967 0.92436 0.88621 0.92090 0.89152 0.93240 0.89580 0.74881 0.87116 0.86467 0.91485 0.90278 0.91740 0.95938 0.92455 0.87467 0.77205 0.91406 0.95376 0.89658 0.89351 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.49 16 2 O -0.40 -8.62 9.89 -129.99 -1.29 -9.90 16 3 C 0.07 1.24 3.13 29.85 0.09 1.34 16 4 H 0.12 1.20 7.79 -2.39 -0.02 1.18 16 5 C -0.17 -2.56 9.48 71.98 0.68 -1.87 16 6 C 0.51 11.96 7.18 87.66 0.63 12.59 16 7 O -0.57 -18.94 16.07 15.96 0.26 -18.69 16 8 N -0.68 -12.48 5.31 -442.81 -2.35 -14.83 16 9 C 0.07 1.45 6.11 44.93 0.27 1.73 16 10 H 0.12 2.77 7.40 -2.39 -0.02 2.75 16 11 C -0.16 -2.34 9.93 30.52 0.30 -2.04 16 12 C -0.13 -2.45 2.02 -52.21 -0.11 -2.56 16 13 C -0.06 -1.51 5.65 30.75 0.17 -1.33 16 14 C 0.06 1.93 5.14 86.33 0.44 2.37 16 15 N -0.53 -17.04 4.33 -899.19 -3.90 -20.94 16 16 C 0.06 2.00 5.45 85.55 0.47 2.47 16 17 C 0.44 21.04 7.42 87.66 0.65 21.69 16 18 O -0.61 -32.73 13.89 -3.07 -0.04 -32.78 16 19 N -0.58 -29.63 5.29 -306.98 -1.62 -31.25 16 20 C -0.33 -18.48 9.68 84.04 0.81 -17.67 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 23 N -0.92 -50.05 13.05 21.66 0.28 -49.77 16 24 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 28 C 0.06 1.42 5.50 86.41 0.47 1.89 16 29 C -0.07 -1.43 5.87 30.76 0.18 -1.25 16 30 H 0.06 0.52 8.08 -2.39 -0.02 0.50 16 31 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 0.53 7.87 -2.38 -0.02 0.51 16 33 H 0.09 1.03 7.87 -2.39 -0.02 1.01 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 1.08 7.93 -2.39 -0.02 1.06 16 36 H 0.41 5.48 6.64 -92.71 -0.62 4.87 16 37 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.08 1.42 6.19 -2.39 -0.01 1.41 16 41 H 0.06 2.52 5.74 -2.39 -0.01 2.51 16 42 H 0.02 0.67 8.12 -2.38 -0.02 0.65 16 43 H 0.06 1.91 8.13 -2.39 -0.02 1.89 16 44 H 0.11 3.39 7.94 -2.39 -0.02 3.37 16 45 H 0.39 19.45 7.90 -92.71 -0.73 18.72 16 46 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 47 H 0.03 0.71 8.12 -2.39 -0.02 0.69 16 48 H 0.09 1.91 7.95 -2.38 -0.02 1.89 16 49 H 0.09 1.42 8.08 -2.39 -0.02 1.40 16 50 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -76.16 403.65 -0.25 -76.40 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: -0.39 Total: 38.48 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: 6.77 Total: 18.49 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -7.59 Total: -116.79 kcal Atomic # 8 Polarization: -60.29 SS G_CDS: -1.07 Total: -61.36 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -76.16 -0.25 -76.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490586918.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.628 kcal (2) G-P(sol) polarization free energy of solvation -76.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds