Wall clock time and date at job start Wed Apr 1 2020 00:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46498 * 109.46937 * 2 1 4 4 C 1.46499 * 120.00032 * 90.00135 * 3 2 1 5 5 C 1.50698 * 109.47338 * 89.99500 * 4 3 2 6 6 H 1.07998 * 120.00088 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00173 * 179.72448 * 5 4 3 8 8 N 1.31519 * 119.99864 * 0.27704 * 7 5 4 9 9 Si 1.86802 * 120.00197 * 180.27557 * 7 5 4 10 10 H 1.48507 * 109.46954 * 60.00154 * 9 7 5 11 11 H 1.48497 * 109.47204 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47291 * 300.00239 * 9 7 5 13 13 C 1.34770 * 120.00223 * 269.99553 * 3 2 1 14 14 O 1.21274 * 120.00578 * 180.02562 * 13 3 2 15 15 C 1.50706 * 119.99995 * 0.02562 * 13 3 2 16 16 N 1.46894 * 109.47420 * 179.97438 * 15 13 3 17 17 C 1.48283 * 111.00186 * 76.51423 * 16 15 13 18 18 C 1.56010 * 105.07067 * 122.54564 * 17 16 15 19 19 H 1.08997 * 116.21478 * 158.90176 * 18 17 16 20 20 C 1.57073 * 99.67935 * 32.87715 * 18 17 16 21 21 C 1.49709 * 111.00180 * 194.11528 * 16 15 13 22 22 H 1.08999 * 116.16622 * 76.14537 * 21 16 15 23 23 C 1.56015 * 104.08063 * 306.12242 * 21 16 15 24 24 N 1.47864 * 105.11641 * 288.80070 * 23 21 16 25 25 C 1.34777 * 126.92898 * 181.91562 * 24 23 21 26 26 O 1.21277 * 119.99905 * 180.02562 * 25 24 23 27 27 C 1.50705 * 120.00001 * 0.02562 * 25 24 23 28 28 O 1.42890 * 109.47164 * 180.02562 * 27 25 24 29 29 C 1.42899 * 114.00345 * 180.02562 * 28 27 25 30 30 H 1.09000 * 109.46773 * 59.99937 * 1 2 3 31 31 H 1.08995 * 109.46971 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47139 * 300.00248 * 1 2 3 33 33 H 1.08996 * 109.47139 * 239.99752 * 2 1 3 34 34 H 1.09000 * 109.46773 * 120.00063 * 2 1 3 35 35 H 1.09007 * 109.46838 * 329.99646 * 4 3 2 36 36 H 1.08996 * 109.47463 * 209.99755 * 4 3 2 37 37 H 0.96996 * 119.99836 * 179.97438 * 8 7 5 38 38 H 1.08997 * 109.47306 * 300.00082 * 15 13 3 39 39 H 1.09005 * 109.47027 * 59.99836 * 15 13 3 40 40 H 1.08997 * 110.32310 * 241.44674 * 17 16 15 41 41 H 1.09001 * 110.32183 * 3.64688 * 17 16 15 42 42 H 1.08999 * 112.35325 * 64.13561 * 20 18 17 43 43 H 1.08997 * 112.35797 * 191.55516 * 20 18 17 44 44 H 1.09000 * 110.31743 * 47.71524 * 23 21 16 45 45 H 1.09005 * 110.31166 * 169.88991 * 23 21 16 46 46 H 1.08997 * 109.47094 * 300.00396 * 27 25 24 47 47 H 1.09003 * 109.46527 * 59.99769 * 27 25 24 48 48 H 1.09001 * 109.46652 * 59.99761 * 29 28 27 49 49 H 1.08997 * 109.47329 * 180.02562 * 29 28 27 50 50 H 1.08997 * 109.46953 * 300.00211 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.6858 1.8350 1.7038 6 1 4.3429 1.2308 1.0959 7 6 4.1509 2.3947 2.8749 8 7 3.3509 3.1308 3.6150 9 14 5.9174 2.1075 3.4103 10 1 6.8407 2.6303 2.3713 11 1 6.1666 2.8125 4.6933 12 1 6.1493 0.6520 3.5915 13 6 2.2431 2.0165 -1.1671 14 8 2.6477 3.1598 -1.1672 15 6 1.9915 1.3063 -2.4723 16 7 2.3093 2.2064 -3.5888 17 6 3.7753 2.3147 -3.7835 18 6 4.0226 1.8700 -5.2583 19 1 4.9553 2.2049 -5.7122 20 6 2.6959 2.3919 -5.9175 21 6 1.7603 1.6776 -4.8773 22 1 0.6870 1.7952 -5.0268 23 6 2.3309 0.2282 -4.9666 24 7 3.7738 0.3981 -5.2416 25 6 4.6813 -0.5788 -5.4373 26 8 5.8403 -0.2952 -5.6547 27 6 4.2560 -2.0237 -5.3861 28 8 5.3888 -2.8623 -5.6216 29 6 5.0928 -4.2600 -5.5949 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 1.5817 1.6877 2.0284 36 1 2.0956 3.1410 1.1384 37 1 3.6780 3.5243 4.4390 38 1 2.6213 0.4186 -2.5302 39 1 0.9434 1.0125 -2.5299 40 1 4.1013 3.3447 -3.6389 41 1 4.2986 1.6510 -3.0951 42 1 2.6108 3.4778 -5.8743 43 1 2.5579 2.0110 -6.9294 44 1 2.1848 -0.2949 -4.0215 45 1 1.8523 -0.3174 -5.7799 46 1 3.8386 -2.2449 -4.4038 47 1 3.5018 -2.2077 -6.1512 48 1 4.3565 -4.4903 -6.3649 49 1 6.0042 -4.8280 -5.7816 50 1 4.6921 -4.5279 -4.6173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494638038.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:36 Heat of formation + Delta-G solvation = -55.829210 kcal Electronic energy + Delta-G solvation = -31242.224332 eV Core-core repulsion = 27078.726704 eV Total energy + Delta-G solvation = -4163.497627 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.50505 -39.32779 -38.66137 -37.45025 -35.28517 -34.11500 -32.81319 -31.63696 -30.11932 -30.01579 -28.99777 -27.70838 -26.26999 -25.83262 -24.92236 -23.04530 -22.49683 -21.63420 -20.75416 -19.21972 -18.20147 -17.73670 -17.23040 -16.74123 -16.55556 -16.36884 -16.18956 -15.78436 -15.44875 -14.95438 -14.89768 -14.34156 -14.14773 -13.85740 -13.76730 -13.39396 -13.13451 -12.98275 -12.87227 -12.76481 -12.55531 -12.27622 -12.10299 -11.98678 -11.86593 -11.78318 -11.72230 -11.47627 -11.39779 -11.22234 -11.08195 -10.91792 -10.73387 -10.52033 -10.16934 -10.11651 -10.02244 -9.63922 -9.10672 -8.82919 -8.41973 -8.21531 -7.64088 -6.03233 -4.08000 2.30460 2.37244 3.32819 3.37415 3.39140 3.45850 3.47955 3.54265 4.00413 4.02359 4.24911 4.38557 4.46560 4.49311 4.66656 4.72411 4.76258 4.91075 4.95128 4.99717 5.01379 5.10281 5.21573 5.26104 5.31211 5.31571 5.31814 5.43339 5.47580 5.54502 5.58253 5.59806 5.73271 5.76216 5.87965 5.96566 6.13157 6.19529 6.43449 6.62162 6.67212 6.78045 7.11515 7.22041 7.46661 7.57112 7.91811 7.93568 8.24967 8.45093 8.92033 9.15400 9.57411 11.04697 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010150 B = 0.003365 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.002053 B = 8318.321156 C = 9069.724395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.601 5.601 4 C 0.249 3.751 5 C -0.527 4.527 6 H 0.055 0.945 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.506 3.494 14 O -0.520 6.520 15 C 0.026 3.974 16 N -0.492 5.492 17 C 0.038 3.962 18 C 0.111 3.889 19 H 0.129 0.871 20 C -0.132 4.132 21 C 0.054 3.946 22 H 0.138 0.862 23 C 0.058 3.942 24 N -0.622 5.622 25 C 0.532 3.468 26 O -0.517 6.517 27 C 0.049 3.951 28 O -0.367 6.367 29 C 0.030 3.970 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.264 0.736 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.043 0.957 49 H 0.092 0.908 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.785 -12.239 -20.446 25.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.130 3.870 5 C -0.565 4.565 6 H 0.073 0.927 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.203 1.203 13 C 0.291 3.709 14 O -0.395 6.395 15 C -0.106 4.106 16 N -0.216 5.216 17 C -0.091 4.091 18 C 0.008 3.992 19 H 0.147 0.853 20 C -0.170 4.170 21 C -0.054 4.054 22 H 0.156 0.844 23 C -0.066 4.066 24 N -0.360 5.360 25 C 0.320 3.680 26 O -0.391 6.391 27 C -0.031 4.031 28 O -0.284 6.284 29 C -0.067 4.067 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.102 0.898 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.062 0.938 49 H 0.110 0.890 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.887 -10.874 -20.250 23.995 hybrid contribution 0.891 -1.417 0.470 1.739 sum -5.996 -12.292 -19.780 24.048 Atomic orbital electron populations 1.22226 0.96773 1.01289 1.02421 1.21377 0.93497 0.84473 1.02341 1.48255 1.64350 1.13097 1.07731 1.19224 0.96090 0.93630 0.78035 1.21392 0.96943 1.31829 1.06378 0.92715 1.24918 0.97767 0.94890 0.96401 1.69920 1.35680 1.33307 1.14465 0.86590 0.84941 0.78222 0.77866 1.20170 1.21132 1.20296 1.20061 0.79115 0.87140 0.84561 1.90673 1.44415 1.17618 1.86804 1.22364 1.02123 0.94554 0.91544 1.64651 1.10404 1.45108 1.01406 1.23699 0.87934 1.03295 0.94160 1.24160 0.99713 0.78357 0.96931 0.85316 1.23946 0.93443 1.01922 0.97687 1.24775 1.00011 0.90206 0.90418 0.84426 1.23366 0.81252 1.00303 1.01716 1.49213 1.08726 1.06576 1.71492 1.19888 0.85082 0.86182 0.76878 1.90749 1.17614 1.83365 1.47393 1.22192 0.89853 0.89085 1.01999 1.88018 1.31216 1.16281 1.92920 1.22851 1.02303 0.81174 1.00333 0.93083 0.92280 0.91924 0.92348 0.90010 0.95141 0.93907 0.92674 0.92191 0.88536 0.88357 0.91901 0.88112 0.89776 0.90322 0.90729 0.90296 0.90373 0.93840 0.88978 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.24 37.16 0.38 -1.70 16 2 C 0.11 1.64 5.93 -4.04 -0.02 1.61 16 3 N -0.60 -12.37 2.46 -175.06 -0.43 -12.80 16 4 C 0.25 6.48 5.16 -5.20 -0.03 6.45 16 5 C -0.53 -15.00 9.39 -34.44 -0.32 -15.32 16 6 H 0.05 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 9 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.51 10.24 7.52 -10.99 -0.08 10.16 16 14 O -0.52 -12.99 15.48 5.56 0.09 -12.90 16 15 C 0.03 0.35 2.68 -4.98 -0.01 0.34 16 16 N -0.49 -6.51 4.84 -218.18 -1.06 -7.56 16 17 C 0.04 0.54 5.44 -1.45 -0.01 0.53 16 18 C 0.11 1.25 5.22 -62.57 -0.33 0.93 16 19 H 0.13 1.49 8.08 -51.93 -0.42 1.07 16 20 C -0.13 -1.10 6.80 -22.30 -0.15 -1.25 16 21 C 0.05 0.46 5.21 -62.31 -0.32 0.14 16 22 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 23 C 0.06 0.45 5.63 -1.68 -0.01 0.44 16 24 N -0.62 -6.83 2.95 -156.80 -0.46 -7.29 16 25 C 0.53 7.01 7.97 -10.98 -0.09 6.92 16 26 O -0.52 -9.21 16.86 -14.35 -0.24 -9.45 16 27 C 0.05 0.47 5.70 36.01 0.21 0.68 16 28 O -0.37 -4.39 10.23 -55.14 -0.56 -4.96 16 29 C 0.03 0.22 11.01 101.05 1.11 1.33 16 30 H 0.05 0.58 7.22 -51.93 -0.37 0.21 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 34 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.06 0.78 5.37 -51.93 -0.28 0.51 16 39 H 0.10 1.08 7.07 -51.93 -0.37 0.71 16 40 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.06 1.06 7.42 -51.93 -0.39 0.68 16 42 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.61 5.54 -51.93 -0.29 0.32 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 400.86 15.07 6.04 6.04 Total: -1.00 -37.96 400.86 -8.98 -46.94 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -8.29 Total: -2.15 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 0.22 Total: 12.96 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -1.21 Total: -53.65 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.72 Total: -27.31 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.96 -8.98 -46.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494638038.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.893 kcal (2) G-P(sol) polarization free energy of solvation -37.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds