Wall clock time and date at job start Wed Apr 1 2020 00:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46498 * 109.46937 * 2 1 4 4 C 1.46499 * 120.00032 * 90.00135 * 3 2 1 5 5 C 1.50698 * 109.47338 * 89.99500 * 4 3 2 6 6 H 1.07998 * 120.00088 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00173 * 179.72448 * 5 4 3 8 8 N 1.31519 * 119.99864 * 0.27704 * 7 5 4 9 9 Si 1.86802 * 120.00197 * 180.27557 * 7 5 4 10 10 H 1.48507 * 109.46954 * 60.00154 * 9 7 5 11 11 H 1.48497 * 109.47204 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47291 * 300.00239 * 9 7 5 13 13 C 1.34770 * 120.00223 * 269.99553 * 3 2 1 14 14 O 1.21274 * 120.00578 * 180.02562 * 13 3 2 15 15 C 1.50706 * 119.99995 * 0.02562 * 13 3 2 16 16 N 1.46894 * 109.47420 * 179.97438 * 15 13 3 17 17 C 1.48283 * 111.00186 * 76.51423 * 16 15 13 18 18 C 1.56010 * 105.07067 * 122.54564 * 17 16 15 19 19 H 1.08997 * 116.21478 * 158.90176 * 18 17 16 20 20 C 1.57073 * 99.67935 * 32.87715 * 18 17 16 21 21 C 1.49709 * 111.00180 * 194.11528 * 16 15 13 22 22 H 1.08999 * 116.16622 * 76.14537 * 21 16 15 23 23 C 1.56015 * 104.08063 * 306.12242 * 21 16 15 24 24 N 1.47864 * 105.11641 * 288.80070 * 23 21 16 25 25 C 1.34777 * 126.92898 * 181.91562 * 24 23 21 26 26 O 1.21277 * 119.99905 * 180.02562 * 25 24 23 27 27 C 1.50705 * 120.00001 * 0.02562 * 25 24 23 28 28 O 1.42890 * 109.47164 * 180.02562 * 27 25 24 29 29 C 1.42899 * 114.00345 * 180.02562 * 28 27 25 30 30 H 1.09000 * 109.46773 * 59.99937 * 1 2 3 31 31 H 1.08995 * 109.46971 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47139 * 300.00248 * 1 2 3 33 33 H 1.08996 * 109.47139 * 239.99752 * 2 1 3 34 34 H 1.09000 * 109.46773 * 120.00063 * 2 1 3 35 35 H 1.09007 * 109.46838 * 329.99646 * 4 3 2 36 36 H 1.08996 * 109.47463 * 209.99755 * 4 3 2 37 37 H 0.96996 * 119.99836 * 179.97438 * 8 7 5 38 38 H 1.08997 * 109.47306 * 300.00082 * 15 13 3 39 39 H 1.09005 * 109.47027 * 59.99836 * 15 13 3 40 40 H 1.08997 * 110.32310 * 241.44674 * 17 16 15 41 41 H 1.09001 * 110.32183 * 3.64688 * 17 16 15 42 42 H 1.08999 * 112.35325 * 64.13561 * 20 18 17 43 43 H 1.08997 * 112.35797 * 191.55516 * 20 18 17 44 44 H 1.09000 * 110.31743 * 47.71524 * 23 21 16 45 45 H 1.09005 * 110.31166 * 169.88991 * 23 21 16 46 46 H 1.08997 * 109.47094 * 300.00396 * 27 25 24 47 47 H 1.09003 * 109.46527 * 59.99769 * 27 25 24 48 48 H 1.09001 * 109.46652 * 59.99761 * 29 28 27 49 49 H 1.08997 * 109.47329 * 180.02562 * 29 28 27 50 50 H 1.08997 * 109.46953 * 300.00211 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.6858 1.8350 1.7038 6 1 4.3429 1.2308 1.0959 7 6 4.1509 2.3947 2.8749 8 7 3.3509 3.1308 3.6150 9 14 5.9174 2.1075 3.4103 10 1 6.8407 2.6303 2.3713 11 1 6.1666 2.8125 4.6933 12 1 6.1493 0.6520 3.5915 13 6 2.2431 2.0165 -1.1671 14 8 2.6477 3.1598 -1.1672 15 6 1.9915 1.3063 -2.4723 16 7 2.3093 2.2064 -3.5888 17 6 3.7753 2.3147 -3.7835 18 6 4.0226 1.8700 -5.2583 19 1 4.9553 2.2049 -5.7122 20 6 2.6959 2.3919 -5.9175 21 6 1.7603 1.6776 -4.8773 22 1 0.6870 1.7952 -5.0268 23 6 2.3309 0.2282 -4.9666 24 7 3.7738 0.3981 -5.2416 25 6 4.6813 -0.5788 -5.4373 26 8 5.8403 -0.2952 -5.6547 27 6 4.2560 -2.0237 -5.3861 28 8 5.3888 -2.8623 -5.6216 29 6 5.0928 -4.2600 -5.5949 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 1.5817 1.6877 2.0284 36 1 2.0956 3.1410 1.1384 37 1 3.6780 3.5243 4.4390 38 1 2.6213 0.4186 -2.5302 39 1 0.9434 1.0125 -2.5299 40 1 4.1013 3.3447 -3.6389 41 1 4.2986 1.6510 -3.0951 42 1 2.6108 3.4778 -5.8743 43 1 2.5579 2.0110 -6.9294 44 1 2.1848 -0.2949 -4.0215 45 1 1.8523 -0.3174 -5.7799 46 1 3.8386 -2.2449 -4.4038 47 1 3.5018 -2.2077 -6.1512 48 1 4.3565 -4.4903 -6.3649 49 1 6.0042 -4.8280 -5.7816 50 1 4.6921 -4.5279 -4.6173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494638038.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:35 Heat of formation + Delta-G solvation = -84.863827 kcal Electronic energy + Delta-G solvation = -31243.483367 eV Core-core repulsion = 27078.726704 eV Total energy + Delta-G solvation = -4164.756663 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.40248 -40.58361 -39.86401 -38.27852 -36.90373 -35.23157 -34.84815 -32.64853 -31.55662 -30.86626 -29.81822 -29.25939 -27.27915 -26.85757 -25.84088 -24.70556 -23.93788 -22.55703 -21.59610 -20.30406 -19.47555 -18.66334 -18.59937 -18.24898 -17.68069 -17.40144 -17.18827 -16.98194 -16.60676 -16.37194 -16.11272 -15.71884 -15.35028 -14.97674 -14.66061 -14.54884 -14.44279 -14.11250 -13.96049 -13.73079 -13.68317 -13.42588 -13.25885 -13.22334 -13.15589 -13.06012 -12.67928 -12.63631 -12.52525 -12.42495 -12.33175 -12.23121 -12.15232 -12.08317 -11.82936 -11.74997 -11.02084 -10.80009 -10.67150 -10.56350 -9.87690 -9.39868 -9.22511 -8.24999 -6.39767 1.31555 1.35942 1.43009 1.43430 1.54311 1.90664 2.21113 2.37363 2.86303 2.93814 3.03994 3.30021 3.39737 3.56380 3.67027 3.77399 3.92209 4.00843 4.10064 4.14852 4.19445 4.27758 4.30421 4.44514 4.47538 4.48948 4.54170 4.56215 4.65899 4.67582 4.79620 4.85628 4.90298 4.95358 4.96004 5.02286 5.04323 5.07328 5.14325 5.22110 5.43033 5.56416 5.69178 5.82208 5.93137 6.01938 6.05734 6.40176 6.68748 6.86557 7.01154 7.27109 7.57872 8.81450 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010150 B = 0.003365 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.002053 B = 8318.321156 C = 9069.724395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.608 5.608 4 C 0.266 3.734 5 C -0.543 4.543 6 H 0.047 0.953 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.962 3.038 10 H -0.283 1.283 11 H -0.275 1.275 12 H -0.260 1.260 13 C 0.492 3.508 14 O -0.583 6.583 15 C 0.045 3.955 16 N -0.514 5.514 17 C 0.043 3.957 18 C 0.105 3.895 19 H 0.114 0.886 20 C -0.116 4.116 21 C 0.064 3.936 22 H 0.177 0.823 23 C 0.055 3.945 24 N -0.619 5.619 25 C 0.521 3.479 26 O -0.581 6.581 27 C 0.053 3.947 28 O -0.410 6.410 29 C 0.025 3.975 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.035 0.965 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.021 0.979 36 H -0.006 1.006 37 H 0.268 0.732 38 H 0.075 0.925 39 H 0.140 0.860 40 H 0.067 0.933 41 H 0.026 0.974 42 H 0.097 0.903 43 H 0.111 0.889 44 H 0.087 0.913 45 H 0.119 0.881 46 H 0.100 0.900 47 H 0.117 0.883 48 H 0.066 0.934 49 H 0.093 0.907 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.157 -15.414 -22.628 29.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.023 4.023 3 N -0.340 5.340 4 C 0.145 3.855 5 C -0.582 4.582 6 H 0.065 0.935 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.786 3.214 10 H -0.209 1.209 11 H -0.199 1.199 12 H -0.185 1.185 13 C 0.280 3.720 14 O -0.462 6.462 15 C -0.085 4.085 16 N -0.239 5.239 17 C -0.086 4.086 18 C 0.001 3.999 19 H 0.132 0.868 20 C -0.155 4.155 21 C -0.043 4.043 22 H 0.194 0.806 23 C -0.067 4.067 24 N -0.355 5.355 25 C 0.310 3.690 26 O -0.461 6.461 27 C -0.026 4.026 28 O -0.329 6.329 29 C -0.071 4.071 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.054 0.946 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.012 0.988 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.157 0.843 40 H 0.086 0.914 41 H 0.044 0.956 42 H 0.116 0.884 43 H 0.129 0.871 44 H 0.105 0.895 45 H 0.137 0.863 46 H 0.118 0.882 47 H 0.135 0.865 48 H 0.084 0.916 49 H 0.111 0.889 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.340 -14.112 -22.443 28.109 hybrid contribution 1.596 -0.384 1.160 2.010 sum -7.744 -14.496 -21.283 26.890 Atomic orbital electron populations 1.22150 0.94032 1.03611 1.01917 1.21737 0.95698 0.81292 1.03527 1.48299 1.64463 1.15122 1.06154 1.18606 0.94852 0.91435 0.80629 1.21671 0.98062 1.31871 1.06576 0.93485 1.25796 1.02102 0.94496 0.96475 1.70033 1.37645 1.34002 1.14901 0.85566 0.79336 0.79069 0.77426 1.20878 1.19938 1.18451 1.21335 0.77441 0.86756 0.86429 1.90639 1.47047 1.20646 1.87873 1.22235 1.04716 0.93718 0.87872 1.64526 1.09307 1.46429 1.03590 1.23451 0.88963 1.00715 0.95485 1.24075 1.01121 0.79522 0.95147 0.86806 1.23917 0.90848 1.01882 0.98808 1.25097 1.01670 0.90418 0.87116 0.80623 1.23637 0.78974 1.00161 1.03927 1.49293 1.10197 1.05785 1.70180 1.20721 0.84464 0.87999 0.75785 1.90713 1.20338 1.84465 1.50551 1.22325 0.89782 0.86137 1.04373 1.87967 1.33162 1.18482 1.93317 1.23043 1.03196 0.79017 1.01811 0.91455 0.88423 0.94610 0.88454 0.91542 0.96051 0.98817 0.92352 0.90697 0.84274 0.91447 0.95581 0.88427 0.87066 0.89477 0.86277 0.88221 0.86540 0.91588 0.88901 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 10.24 71.99 0.74 -2.70 16 2 C 0.10 2.85 5.93 86.38 0.51 3.36 16 3 N -0.61 -25.45 2.46 -826.16 -2.03 -27.48 16 4 C 0.27 14.61 5.16 85.63 0.44 15.05 16 5 C -0.54 -32.21 9.39 25.60 0.24 -31.96 16 6 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 7 C 0.01 0.62 5.46 84.65 0.46 1.08 16 8 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 9 Si 0.96 46.47 29.54 68.60 2.03 48.50 16 10 H -0.28 -13.90 7.11 99.48 0.71 -13.20 16 11 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 12 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 13 C 0.49 20.23 7.52 87.66 0.66 20.89 16 14 O -0.58 -30.86 15.48 -3.01 -0.05 -30.91 16 15 C 0.05 1.15 2.68 85.56 0.23 1.38 16 16 N -0.51 -12.79 4.84 -844.18 -4.09 -16.88 16 17 C 0.04 1.28 5.44 87.08 0.47 1.75 16 18 C 0.10 2.35 5.22 46.93 0.24 2.59 16 19 H 0.11 2.84 8.08 -2.39 -0.02 2.82 16 20 C -0.12 -1.61 6.80 33.46 0.23 -1.38 16 21 C 0.06 0.79 5.21 46.85 0.24 1.04 16 22 H 0.18 0.99 8.14 -2.39 -0.02 0.97 16 23 C 0.06 0.57 5.63 87.16 0.49 1.06 16 24 N -0.62 -12.21 2.95 -768.39 -2.26 -14.47 16 25 C 0.52 13.10 7.97 87.66 0.70 13.79 16 26 O -0.58 -21.42 16.86 16.02 0.27 -21.15 16 27 C 0.05 0.86 5.70 71.24 0.41 1.27 16 28 O -0.41 -9.18 10.23 -129.94 -1.33 -10.51 16 29 C 0.02 0.30 11.01 113.37 1.25 1.55 16 30 H 0.07 1.24 7.22 -2.39 -0.02 1.23 16 31 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 2.02 6.44 -2.39 -0.02 2.01 16 34 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 35 H 0.02 1.19 8.07 -2.38 -0.02 1.17 16 36 H -0.01 -0.40 7.42 -2.39 -0.02 -0.42 16 37 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 38 H 0.08 1.71 5.37 -2.39 -0.01 1.70 16 39 H 0.14 2.35 7.07 -2.38 -0.02 2.33 16 40 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.03 0.94 7.42 -2.39 -0.02 0.92 16 42 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.09 0.82 5.54 -2.39 -0.01 0.81 16 45 H 0.12 0.34 8.14 -2.38 -0.02 0.32 16 46 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -93.72 400.86 1.07 -92.65 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 0.93 Total: 8.34 kcal Atomic # 6 Polarization: 21.47 SS G_CDS: 7.32 Total: 28.78 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -8.10 Total: -115.70 kcal Atomic # 8 Polarization: -61.46 SS G_CDS: -1.11 Total: -62.57 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -93.72 1.07 -92.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494638038.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.785 kcal (2) G-P(sol) polarization free energy of solvation -93.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds