Wall clock time and date at job start Tue Mar 31 2020 22:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99246 * 2 1 4 4 C 1.53001 * 109.46939 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47017 * 54.99971 * 4 3 2 6 6 C 1.53001 * 109.47147 * 295.00501 * 4 3 2 7 7 C 1.50701 * 109.47364 * 175.00056 * 4 3 2 8 8 O 1.21282 * 119.99610 * 0.02562 * 7 4 3 9 9 N 1.34777 * 119.99677 * 180.02562 * 7 4 3 10 10 C 1.46505 * 119.99305 * 180.02562 * 9 7 4 11 11 C 1.50703 * 109.46784 * 180.02562 * 10 9 7 12 12 C 1.29823 * 118.55903 * 94.99514 * 11 10 9 13 13 C 1.50140 * 123.28749 * 180.39016 * 12 11 10 14 14 N 1.46846 * 110.27590 * 342.93553 * 13 12 11 15 15 C 1.46899 * 111.00302 * 174.31282 * 14 13 12 16 16 C 1.50698 * 109.46987 * 66.03980 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31413 * 119.99930 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99918 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47112 * 89.99702 * 23 21 19 25 25 H 1.48498 * 109.47011 * 209.99970 * 23 21 19 26 26 H 1.48494 * 109.47201 * 329.99943 * 23 21 19 27 27 C 1.47239 * 110.20601 * 50.91850 * 14 13 12 28 28 C 1.50311 * 118.54939 * 275.02136 * 11 10 9 29 29 H 1.09006 * 109.46724 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47552 * 299.99401 * 1 2 3 31 31 H 1.08996 * 109.47446 * 60.00124 * 1 2 3 32 32 H 1.09005 * 109.47034 * 60.00517 * 3 2 1 33 33 H 1.08991 * 109.47602 * 299.99866 * 3 2 1 34 34 H 1.09003 * 109.47080 * 179.97438 * 6 4 3 35 35 H 1.09000 * 109.47157 * 299.99080 * 6 4 3 36 36 H 1.08996 * 109.47455 * 59.99779 * 6 4 3 37 37 H 0.96995 * 120.00499 * 0.02562 * 9 7 4 38 38 H 1.08995 * 109.47150 * 60.00098 * 10 9 7 39 39 H 1.09003 * 109.47146 * 299.99438 * 10 9 7 40 40 H 1.08001 * 118.35167 * 0.37934 * 12 11 10 41 41 H 1.08998 * 109.34082 * 222.68723 * 13 12 11 42 42 H 1.09003 * 109.33334 * 103.17518 * 13 12 11 43 43 H 1.09003 * 109.46477 * 306.04469 * 15 14 13 44 44 H 1.08993 * 109.47002 * 186.04796 * 15 14 13 45 45 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 46 46 H 0.96999 * 119.99993 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.63934 * 50.89479 * 27 14 13 48 48 H 1.08999 * 109.63492 * 171.50188 * 27 14 13 49 49 H 1.09006 * 109.42858 * 283.57665 * 28 11 10 50 50 H 1.08998 * 109.43146 * 43.42197 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1849 0.0006 5 1 3.8514 0.5684 -0.8410 6 6 3.9951 0.5371 1.3083 7 6 4.1478 2.5562 -0.1232 8 8 3.4346 3.5339 -0.2035 9 7 5.4881 2.6961 -0.1446 10 6 6.0835 4.0294 -0.2644 11 6 7.5858 3.9104 -0.2652 12 6 8.2040 3.8620 -1.4058 13 6 9.6949 3.7354 -1.5303 14 7 10.3429 4.0810 -0.2587 15 6 11.7896 3.8337 -0.3207 16 6 12.4186 4.7783 -1.3122 17 8 11.7296 5.5791 -1.9081 18 7 13.7469 4.7339 -1.5359 19 6 14.3184 5.5895 -2.4421 20 1 13.7048 6.3021 -2.9733 21 6 15.6870 5.5399 -2.6770 22 7 16.2347 6.3597 -3.5459 23 14 16.7482 4.3070 -1.7587 24 1 16.8206 3.0422 -2.5335 25 1 18.1151 4.8613 -1.5871 26 1 16.1525 4.0373 -0.4255 27 6 9.7261 3.3297 0.8472 28 6 8.3025 3.8523 1.0548 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6884 1.8464 0.8901 33 1 1.6885 1.8464 -0.8899 34 1 5.0817 0.4507 1.3085 35 1 3.6792 1.1535 2.1499 36 1 3.5522 -0.4548 1.3978 37 1 6.0585 1.9142 -0.0807 38 1 5.7679 4.6452 0.5776 39 1 5.7556 4.4914 -1.1956 40 1 7.6163 3.9153 -2.3103 41 1 10.0503 4.4078 -2.3110 42 1 9.9488 2.7096 -1.7976 43 1 11.9692 2.8053 -0.6343 44 1 12.2283 3.9952 0.6639 45 1 14.2980 4.0938 -1.0591 46 1 17.1902 6.3253 -3.7096 47 1 9.6934 2.2694 0.5964 48 1 10.3066 3.4759 1.7580 49 1 8.3430 4.8511 1.4896 50 1 7.7660 3.1854 1.7297 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508194862.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:58 Heat of formation + Delta-G solvation = -95.337944 kcal Electronic energy + Delta-G solvation = -28862.477392 eV Core-core repulsion = 24697.266537 eV Total energy + Delta-G solvation = -4165.210855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.40036 -39.42138 -38.26722 -37.87070 -35.60433 -34.24182 -33.96024 -32.89794 -31.67956 -30.84975 -28.71246 -27.76192 -26.35464 -26.01761 -24.26700 -23.66144 -23.01188 -21.85132 -20.38352 -19.40356 -18.33273 -18.11207 -17.44166 -16.75321 -16.42346 -16.27037 -16.11075 -15.58764 -15.42563 -15.20674 -15.03852 -14.81685 -14.31244 -14.18431 -13.99212 -13.77592 -13.49618 -13.37546 -13.04805 -12.91242 -12.72206 -12.63290 -12.45453 -12.32839 -12.17939 -11.98154 -11.86979 -11.74888 -11.49897 -11.32928 -11.21648 -10.98149 -10.61638 -10.55048 -10.15767 -10.10402 -9.99157 -9.57286 -9.35692 -8.96204 -8.62126 -8.20498 -7.98118 -6.32711 -3.84219 1.90837 2.30919 2.86019 3.00745 3.04647 3.13452 3.57925 3.70861 3.87684 4.08531 4.23272 4.43056 4.46364 4.59139 4.62058 4.76601 4.84759 4.91480 4.94816 5.11811 5.17637 5.18367 5.22861 5.23481 5.24401 5.31767 5.35496 5.42103 5.44700 5.49169 5.55853 5.58532 5.65624 5.74530 5.78345 5.81922 5.89392 6.02241 6.11830 6.25198 6.34722 6.67968 6.83343 7.16264 7.18803 7.22629 7.56777 7.88121 8.12896 8.58395 8.93639 9.40666 9.81387 10.80386 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032524 B = 0.001635 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.702227 B =17116.855335 C =17331.489621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.080 3.920 4 C -0.110 4.110 5 H 0.106 0.894 6 C -0.140 4.140 7 C 0.520 3.480 8 O -0.543 6.543 9 N -0.721 5.721 10 C 0.158 3.842 11 C -0.156 4.156 12 C -0.106 4.106 13 C 0.072 3.928 14 N -0.509 5.509 15 C 0.042 3.958 16 C 0.452 3.548 17 O -0.559 6.559 18 N -0.591 5.591 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.050 3.950 28 C -0.071 4.071 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.402 0.598 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.041 0.959 43 H 0.049 0.951 44 H 0.091 0.909 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.034 0.966 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.730 -16.137 11.415 30.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.003 3.997 4 C -0.132 4.132 5 H 0.124 0.876 6 C -0.198 4.198 7 C 0.306 3.694 8 O -0.420 6.420 9 N -0.372 5.372 10 C 0.036 3.964 11 C -0.157 4.157 12 C -0.125 4.125 13 C -0.055 4.055 14 N -0.233 5.233 15 C -0.090 4.090 16 C 0.237 3.763 17 O -0.441 6.441 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.078 4.078 28 C -0.108 4.108 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.236 0.764 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.129 0.871 41 H 0.136 0.864 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.109 0.891 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.052 0.948 48 H 0.096 0.904 49 H 0.100 0.900 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.474 -14.430 10.923 30.438 hybrid contribution 1.322 -1.841 0.469 2.314 sum -23.151 -16.271 11.392 30.504 Atomic orbital electron populations 1.22738 0.80595 1.02763 1.00237 1.87797 1.19997 1.27860 1.95556 1.22220 0.91472 0.84256 1.01774 1.21183 0.95407 0.94646 1.01925 0.87560 1.21732 1.01314 1.01753 0.94986 1.20396 0.82381 0.90747 0.75918 1.90723 1.60975 1.40743 1.49540 1.46091 1.06347 1.10121 1.74660 1.20347 0.89650 0.83792 1.02659 1.20834 0.93579 1.05560 0.95748 1.22344 0.96036 0.96777 0.97351 1.21272 0.90722 0.99818 0.93715 1.62023 1.01757 1.55984 1.03564 1.21941 0.88756 0.97649 1.00608 1.19637 0.82600 0.87509 0.86514 1.90526 1.61241 1.40373 1.51945 1.42214 1.06741 1.34769 1.39287 1.19431 0.92441 1.14723 1.16766 0.86256 1.25034 0.96567 0.97484 0.97020 1.69621 1.12309 1.36729 1.33436 0.86677 0.81112 0.81711 0.79916 1.19686 1.20167 1.19494 1.22221 0.95358 0.95058 0.95168 1.20393 0.93857 1.02209 0.94345 0.89509 0.93955 0.93929 0.92438 0.92244 0.92009 0.92131 0.90551 0.76358 0.90855 0.90951 0.87060 0.86378 0.94078 0.93310 0.89052 0.79733 0.91609 0.94827 0.90405 0.90013 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.25 10.24 -35.23 -0.36 -3.61 16 3 C 0.08 0.66 4.67 37.16 0.17 0.84 16 4 C -0.11 -0.81 2.96 -91.77 -0.27 -1.09 16 5 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 6 C -0.14 -0.82 8.99 37.16 0.33 -0.49 16 7 C 0.52 5.07 7.15 -10.98 -0.08 4.99 16 8 O -0.54 -7.38 15.92 5.56 0.09 -7.29 16 9 N -0.72 -6.00 5.44 -61.47 -0.33 -6.34 16 10 C 0.16 1.58 5.72 -5.19 -0.03 1.55 16 11 C -0.16 -1.66 5.26 -100.92 -0.53 -2.19 16 12 C -0.11 -1.29 9.50 -35.97 -0.34 -1.63 16 13 C 0.07 1.06 5.22 -5.28 -0.03 1.04 16 14 N -0.51 -7.74 4.46 -237.58 -1.06 -8.80 16 15 C 0.04 0.67 5.44 -4.98 -0.03 0.64 16 16 C 0.45 9.95 7.54 -10.99 -0.08 9.87 16 17 O -0.56 -14.52 13.88 5.55 0.08 -14.44 16 18 N -0.59 -13.74 5.09 -10.96 -0.06 -13.80 16 19 C -0.30 -8.49 10.16 -14.93 -0.15 -8.64 16 20 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -25.50 13.96 55.50 0.77 -24.73 16 23 Si 0.88 19.05 27.74 -169.99 -4.71 14.34 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 27 C 0.05 0.56 5.59 -3.61 -0.02 0.54 16 28 C -0.07 -0.71 6.04 -28.04 -0.17 -0.87 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.53 7.95 -51.93 -0.41 0.12 16 34 H 0.06 0.28 7.57 -51.93 -0.39 -0.11 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.45 7.82 -51.93 -0.41 0.04 16 37 H 0.40 2.52 7.88 -40.82 -0.32 2.20 16 38 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 39 H 0.07 0.80 7.85 -51.93 -0.41 0.39 16 40 H 0.11 1.24 7.81 -52.49 -0.41 0.83 16 41 H 0.12 2.20 5.98 -51.93 -0.31 1.89 16 42 H 0.04 0.56 8.06 -51.93 -0.42 0.14 16 43 H 0.05 0.68 8.06 -51.93 -0.42 0.26 16 44 H 0.09 1.28 7.94 -51.93 -0.41 0.87 16 45 H 0.37 7.53 5.76 -40.82 -0.24 7.30 16 46 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 48 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 49 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 405.83 15.07 6.12 6.12 Total: -1.00 -34.24 405.83 -8.01 -42.25 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -8.34 Total: 9.43 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -0.21 Total: 6.89 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.68 Total: -53.67 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.20 Total: -25.35 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.34 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.24 -8.01 -42.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508194862.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.088 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds