Wall clock time and date at job start Tue Mar 31 2020 22:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99246 * 2 1 4 4 C 1.53001 * 109.46939 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47017 * 54.99971 * 4 3 2 6 6 C 1.53001 * 109.47147 * 295.00501 * 4 3 2 7 7 C 1.50701 * 109.47364 * 175.00056 * 4 3 2 8 8 O 1.21282 * 119.99610 * 0.02562 * 7 4 3 9 9 N 1.34777 * 119.99677 * 180.02562 * 7 4 3 10 10 C 1.46505 * 119.99305 * 180.02562 * 9 7 4 11 11 C 1.50703 * 109.46784 * 180.02562 * 10 9 7 12 12 C 1.29823 * 118.55903 * 94.99514 * 11 10 9 13 13 C 1.50140 * 123.28749 * 180.39016 * 12 11 10 14 14 N 1.46846 * 110.27590 * 342.93553 * 13 12 11 15 15 C 1.46899 * 111.00302 * 174.31282 * 14 13 12 16 16 C 1.50698 * 109.46987 * 66.03980 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31413 * 119.99930 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99918 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47112 * 89.99702 * 23 21 19 25 25 H 1.48498 * 109.47011 * 209.99970 * 23 21 19 26 26 H 1.48494 * 109.47201 * 329.99943 * 23 21 19 27 27 C 1.47239 * 110.20601 * 50.91850 * 14 13 12 28 28 C 1.50311 * 118.54939 * 275.02136 * 11 10 9 29 29 H 1.09006 * 109.46724 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47552 * 299.99401 * 1 2 3 31 31 H 1.08996 * 109.47446 * 60.00124 * 1 2 3 32 32 H 1.09005 * 109.47034 * 60.00517 * 3 2 1 33 33 H 1.08991 * 109.47602 * 299.99866 * 3 2 1 34 34 H 1.09003 * 109.47080 * 179.97438 * 6 4 3 35 35 H 1.09000 * 109.47157 * 299.99080 * 6 4 3 36 36 H 1.08996 * 109.47455 * 59.99779 * 6 4 3 37 37 H 0.96995 * 120.00499 * 0.02562 * 9 7 4 38 38 H 1.08995 * 109.47150 * 60.00098 * 10 9 7 39 39 H 1.09003 * 109.47146 * 299.99438 * 10 9 7 40 40 H 1.08001 * 118.35167 * 0.37934 * 12 11 10 41 41 H 1.08998 * 109.34082 * 222.68723 * 13 12 11 42 42 H 1.09003 * 109.33334 * 103.17518 * 13 12 11 43 43 H 1.09003 * 109.46477 * 306.04469 * 15 14 13 44 44 H 1.08993 * 109.47002 * 186.04796 * 15 14 13 45 45 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 46 46 H 0.96999 * 119.99993 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.63934 * 50.89479 * 27 14 13 48 48 H 1.08999 * 109.63492 * 171.50188 * 27 14 13 49 49 H 1.09006 * 109.42858 * 283.57665 * 28 11 10 50 50 H 1.08998 * 109.43146 * 43.42197 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1849 0.0006 5 1 3.8514 0.5684 -0.8410 6 6 3.9951 0.5371 1.3083 7 6 4.1478 2.5562 -0.1232 8 8 3.4346 3.5339 -0.2035 9 7 5.4881 2.6961 -0.1446 10 6 6.0835 4.0294 -0.2644 11 6 7.5858 3.9104 -0.2652 12 6 8.2040 3.8620 -1.4058 13 6 9.6949 3.7354 -1.5303 14 7 10.3429 4.0810 -0.2587 15 6 11.7896 3.8337 -0.3207 16 6 12.4186 4.7783 -1.3122 17 8 11.7296 5.5791 -1.9081 18 7 13.7469 4.7339 -1.5359 19 6 14.3184 5.5895 -2.4421 20 1 13.7048 6.3021 -2.9733 21 6 15.6870 5.5399 -2.6770 22 7 16.2347 6.3597 -3.5459 23 14 16.7482 4.3070 -1.7587 24 1 16.8206 3.0422 -2.5335 25 1 18.1151 4.8613 -1.5871 26 1 16.1525 4.0373 -0.4255 27 6 9.7261 3.3297 0.8472 28 6 8.3025 3.8523 1.0548 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6884 1.8464 0.8901 33 1 1.6885 1.8464 -0.8899 34 1 5.0817 0.4507 1.3085 35 1 3.6792 1.1535 2.1499 36 1 3.5522 -0.4548 1.3978 37 1 6.0585 1.9142 -0.0807 38 1 5.7679 4.6452 0.5776 39 1 5.7556 4.4914 -1.1956 40 1 7.6163 3.9153 -2.3103 41 1 10.0503 4.4078 -2.3110 42 1 9.9488 2.7096 -1.7976 43 1 11.9692 2.8053 -0.6343 44 1 12.2283 3.9952 0.6639 45 1 14.2980 4.0938 -1.0591 46 1 17.1902 6.3253 -3.7096 47 1 9.6934 2.2694 0.5964 48 1 10.3066 3.4759 1.7580 49 1 8.3430 4.8511 1.4896 50 1 7.7660 3.1854 1.7297 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508194862.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:57 Heat of formation + Delta-G solvation = -123.022704 kcal Electronic energy + Delta-G solvation = -28863.677893 eV Core-core repulsion = 24697.266537 eV Total energy + Delta-G solvation = -4166.411356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.21089 -40.69961 -39.44371 -38.76748 -36.63344 -35.89244 -34.89159 -33.88736 -33.64790 -31.77037 -29.87731 -28.32246 -27.53067 -26.67626 -25.73969 -24.70139 -23.81828 -22.81725 -21.26231 -21.11340 -20.21408 -18.87699 -18.28511 -17.76189 -17.47457 -17.07449 -16.99750 -16.79723 -16.60862 -16.18665 -16.00476 -15.83876 -15.50889 -15.44211 -15.05767 -14.83324 -14.68002 -14.46528 -14.22574 -13.91897 -13.84710 -13.75476 -13.44006 -13.28563 -13.17861 -12.99285 -12.91282 -12.48885 -12.43879 -12.39896 -12.30446 -12.09608 -11.95846 -11.87168 -11.46129 -11.44232 -10.97355 -10.68727 -10.34683 -10.22293 -10.15586 -9.87828 -9.16544 -8.39659 -6.00426 1.01234 1.31307 1.36747 1.45846 1.54696 1.98641 2.15435 2.24525 2.65044 2.97838 3.16735 3.24369 3.57650 3.61112 3.80981 3.87563 4.01477 4.13440 4.22601 4.31424 4.38108 4.40541 4.43777 4.46390 4.49475 4.49661 4.60173 4.62569 4.64319 4.65847 4.71284 4.80321 4.84784 4.90716 4.97937 4.99593 5.09741 5.21134 5.30865 5.34620 5.40241 5.55885 5.88638 5.94889 6.12149 6.12467 6.21738 6.48761 6.62202 6.90969 7.16091 7.42467 8.00585 8.78132 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032524 B = 0.001635 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.702227 B =17116.855335 C =17331.489621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.081 3.919 4 C -0.104 4.104 5 H 0.121 0.879 6 C -0.135 4.135 7 C 0.520 3.480 8 O -0.586 6.586 9 N -0.707 5.707 10 C 0.164 3.836 11 C -0.133 4.133 12 C -0.126 4.126 13 C 0.077 3.923 14 N -0.536 5.536 15 C 0.054 3.946 16 C 0.450 3.550 17 O -0.607 6.607 18 N -0.592 5.592 19 C -0.327 4.327 20 H 0.054 0.946 21 C -0.016 4.016 22 N -0.936 5.936 23 Si 0.965 3.035 24 H -0.257 1.257 25 H -0.277 1.277 26 H -0.229 1.229 27 C 0.051 3.949 28 C -0.072 4.072 29 H 0.103 0.897 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.416 0.584 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.113 0.887 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.081 0.919 44 H 0.123 0.877 45 H 0.389 0.611 46 H 0.278 0.722 47 H 0.054 0.946 48 H 0.096 0.904 49 H 0.073 0.927 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.619 -19.991 14.768 34.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C 0.004 3.996 4 C -0.125 4.125 5 H 0.139 0.861 6 C -0.193 4.193 7 C 0.307 3.693 8 O -0.466 6.466 9 N -0.359 5.359 10 C 0.040 3.960 11 C -0.134 4.134 12 C -0.146 4.146 13 C -0.050 4.050 14 N -0.261 5.261 15 C -0.077 4.077 16 C 0.238 3.762 17 O -0.491 6.491 18 N -0.234 5.234 19 C -0.456 4.456 20 H 0.072 0.928 21 C -0.214 4.214 22 N -0.577 5.577 23 Si 0.785 3.215 24 H -0.182 1.182 25 H -0.202 1.202 26 H -0.152 1.152 27 C -0.076 4.076 28 C -0.109 4.109 29 H 0.121 0.879 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.253 0.747 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.131 0.869 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.141 0.859 45 H 0.225 0.775 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.114 0.886 49 H 0.092 0.908 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -24.374 -18.329 14.304 33.685 hybrid contribution 1.114 -0.543 -0.630 1.390 sum -23.260 -18.872 13.674 32.927 Atomic orbital electron populations 1.22933 0.79406 1.04029 1.00678 1.87771 1.21383 1.27591 1.95588 1.22159 0.92292 0.84299 1.00870 1.21165 0.94582 0.93231 1.03516 0.86150 1.21721 1.02529 1.01436 0.93578 1.20819 0.82400 0.91169 0.74874 1.90710 1.61975 1.42326 1.51585 1.45917 1.06144 1.09982 1.73811 1.20186 0.89228 0.84615 1.01935 1.20921 0.93689 1.03024 0.95769 1.22213 0.94741 0.99359 0.98282 1.21026 0.92152 0.99089 0.92717 1.61945 1.01468 1.58021 1.04671 1.21875 0.89142 0.96942 0.99726 1.20976 0.81903 0.87199 0.86151 1.90523 1.62337 1.42527 1.53706 1.42038 1.07562 1.34761 1.39087 1.18994 0.92746 1.15418 1.18489 0.92832 1.26116 0.97673 0.99853 0.97744 1.69812 1.13073 1.39273 1.35571 0.85361 0.77987 0.78170 0.79973 1.18179 1.20207 1.15243 1.22357 0.95507 0.95647 0.94070 1.20487 0.93723 1.02608 0.94047 0.87863 0.93362 0.93692 0.93060 0.93565 0.90093 0.92657 0.90265 0.74696 0.91021 0.92361 0.86920 0.91383 0.92922 0.90123 0.85918 0.77494 0.91225 0.92777 0.88574 0.90813 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.40 -6.18 10.24 -148.98 -1.53 -7.71 16 3 C 0.08 1.29 4.67 71.98 0.34 1.63 16 4 C -0.10 -1.35 2.96 -11.54 -0.03 -1.38 16 5 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 6 C -0.14 -1.21 8.99 71.98 0.65 -0.57 16 7 C 0.52 9.49 7.15 87.66 0.63 10.11 16 8 O -0.59 -15.88 15.92 -3.04 -0.05 -15.93 16 9 N -0.71 -10.25 5.44 -466.77 -2.54 -12.79 16 10 C 0.16 3.05 5.72 85.63 0.49 3.54 16 11 C -0.13 -2.58 5.26 -15.40 -0.08 -2.66 16 12 C -0.13 -3.01 9.50 26.68 0.25 -2.76 16 13 C 0.08 2.28 5.22 85.39 0.45 2.72 16 14 N -0.54 -15.18 4.46 -905.56 -4.04 -19.22 16 15 C 0.05 1.57 5.44 85.56 0.47 2.04 16 16 C 0.45 19.88 7.54 87.66 0.66 20.54 16 17 O -0.61 -33.22 13.88 -3.07 -0.04 -33.27 16 18 N -0.59 -27.44 5.09 -306.98 -1.56 -29.00 16 19 C -0.33 -19.07 10.16 84.04 0.85 -18.21 16 20 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 21 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 22 N -0.94 -56.46 13.96 21.66 0.30 -56.16 16 23 Si 0.97 38.21 27.74 68.60 1.90 40.11 16 24 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 25 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 26 H -0.23 -7.53 6.52 99.48 0.65 -6.88 16 27 C 0.05 0.92 5.59 86.26 0.48 1.40 16 28 C -0.07 -1.17 6.04 29.75 0.18 -0.99 16 29 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.05 0.84 7.95 -2.39 -0.02 0.82 16 34 H 0.08 0.42 7.57 -2.39 -0.02 0.40 16 35 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.08 0.71 7.82 -2.39 -0.02 0.69 16 37 H 0.42 3.80 7.88 -92.71 -0.73 3.07 16 38 H 0.07 1.41 8.13 -2.39 -0.02 1.39 16 39 H 0.06 1.28 7.85 -2.39 -0.02 1.26 16 40 H 0.11 2.57 7.81 -2.91 -0.02 2.55 16 41 H 0.07 2.69 5.98 -2.39 -0.01 2.68 16 42 H 0.05 1.37 8.06 -2.39 -0.02 1.35 16 43 H 0.08 1.89 8.06 -2.39 -0.02 1.87 16 44 H 0.12 2.85 7.94 -2.39 -0.02 2.83 16 45 H 0.39 14.76 5.76 -92.71 -0.53 14.22 16 46 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 47 H 0.05 0.79 8.08 -2.39 -0.02 0.77 16 48 H 0.10 1.42 7.92 -2.39 -0.02 1.40 16 49 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 50 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -82.47 405.83 -0.89 -83.36 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: -0.38 Total: 34.07 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 7.04 Total: 16.53 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -7.84 Total: -117.17 kcal Atomic # 8 Polarization: -55.29 SS G_CDS: -1.62 Total: -56.90 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 1.90 Total: 40.11 kcal Total: -82.47 -0.89 -83.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508194862.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.663 kcal (2) G-P(sol) polarization free energy of solvation -82.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds