Wall clock time and date at job start Tue Mar 31 2020 23:59:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 O 1.42900 * 109.47481 * 2 1
4 4 C 1.42899 * 114.00249 * 186.92443 * 3 2 1
5 5 C 1.53001 * 109.47111 * 156.49111 * 4 3 2
6 6 N 1.46503 * 109.47222 * 185.00288 * 5 4 3
7 7 C 1.34256 * 125.75767 * 124.99766 * 6 5 4
8 8 C 1.38042 * 107.41583 * 179.97438 * 7 6 5
9 9 C 1.47430 * 126.41458 * 180.02562 * 8 7 6
10 10 O 1.21608 * 119.99916 * 348.97865 * 9 8 7
11 11 N 1.34774 * 120.00096 * 168.97890 * 9 8 7
12 12 C 1.46495 * 119.99933 * 353.16240 * 11 9 8
13 13 C 1.53004 * 109.46915 * 95.12308 * 12 11 9
14 14 C 1.46505 * 120.00071 * 173.16409 * 11 9 8
15 15 C 1.50699 * 109.47156 * 89.99711 * 14 11 9
16 16 H 1.08003 * 120.00050 * 0.02562 * 15 14 11
17 17 C 1.37874 * 119.99577 * 180.02562 * 15 14 11
18 18 N 1.31509 * 120.00625 * 0.02562 * 17 15 14
19 19 Si 1.86810 * 119.99626 * 180.02562 * 17 15 14
20 20 H 1.48501 * 109.46929 * 90.00111 * 19 17 15
21 21 H 1.48494 * 109.46915 * 210.00178 * 19 17 15
22 22 H 1.48498 * 109.46735 * 330.00009 * 19 17 15
23 23 C 1.41292 * 107.17320 * 0.02562 * 8 7 6
24 24 N 1.30454 * 108.01783 * 359.71507 * 23 8 7
25 25 O 1.42895 * 109.47102 * 276.48796 * 4 3 2
26 26 C 1.42896 * 114.00003 * 77.95743 * 25 4 3
27 27 C 1.53002 * 109.47499 * 172.93792 * 26 25 4
28 28 H 1.09006 * 109.46919 * 60.00283 * 1 2 3
29 29 H 1.09000 * 109.47150 * 179.97438 * 1 2 3
30 30 H 1.08992 * 109.47234 * 300.00502 * 1 2 3
31 31 H 1.09000 * 109.47812 * 239.99772 * 2 1 3
32 32 H 1.08998 * 109.47253 * 119.99792 * 2 1 3
33 33 H 1.08997 * 109.47060 * 36.49371 * 4 3 2
34 34 H 1.09006 * 109.46911 * 305.00134 * 5 4 3
35 35 H 1.08997 * 109.47550 * 64.99531 * 5 4 3
36 36 H 1.08000 * 126.29021 * 359.97438 * 7 6 5
37 37 H 1.09001 * 109.47175 * 215.11580 * 12 11 9
38 38 H 1.08991 * 109.47370 * 335.12040 * 12 11 9
39 39 H 1.08997 * 109.46914 * 309.39235 * 13 12 11
40 40 H 1.08996 * 109.47341 * 69.39424 * 13 12 11
41 41 H 1.09007 * 109.46930 * 189.39954 * 13 12 11
42 42 H 1.08992 * 109.46929 * 210.00397 * 14 11 9
43 43 H 1.09004 * 109.46586 * 330.00005 * 14 11 9
44 44 H 0.97003 * 120.00242 * 180.02562 * 18 17 15
45 45 H 1.07994 * 125.99140 * 180.02562 * 23 8 7
46 46 H 1.09000 * 109.47503 * 292.94524 * 26 25 4
47 47 H 1.09002 * 109.46740 * 52.93928 * 26 25 4
48 48 H 1.08997 * 109.47313 * 180.02562 * 27 26 25
49 49 H 1.09003 * 109.46837 * 300.00290 * 27 26 25
50 50 H 1.08996 * 109.46815 * 59.99903 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0064 1.3472 0.0000
4 6 3.4219 1.4632 -0.1574
5 6 3.7610 2.8451 -0.7199
6 7 5.1982 2.9218 -0.9933
7 6 5.7567 3.2477 -2.1699
8 6 7.1263 3.2034 -2.0036
9 6 8.1426 3.4895 -3.0326
10 8 7.8131 3.6028 -4.1977
11 7 9.4368 3.6256 -2.6820
12 6 9.8148 3.6389 -1.2667
13 6 10.2280 2.2300 -0.8360
14 6 10.4657 3.7603 -3.7162
15 6 10.6622 5.2184 -4.0424
16 1 10.0793 5.9697 -3.5302
17 6 11.5861 5.5933 -4.9947
18 7 12.2954 4.6785 -5.6188
19 14 11.8302 7.4008 -5.3985
20 1 12.8803 7.9680 -4.5148
21 1 12.2488 7.5390 -6.8165
22 1 10.5555 8.1321 -5.1851
23 6 7.3719 2.8324 -0.6625
24 7 6.2203 2.6734 -0.0705
25 8 4.0575 1.2965 1.1115
26 6 4.1528 -0.0635 1.5396
27 6 4.9986 -0.1396 2.8123
28 1 -0.3633 0.5138 -0.8901
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5139 0.8899
31 1 1.8934 -0.5138 -0.8899
32 1 1.8933 -0.5138 0.8900
33 1 3.7752 0.6945 -0.8446
34 1 3.2061 3.0073 -1.6440
35 1 3.4880 3.6102 0.0068
36 1 5.2309 3.4984 -3.0794
37 1 10.6505 4.3232 -1.1202
38 1 8.9662 3.9679 -0.6670
39 1 9.4584 1.5184 -1.1349
40 1 11.1718 1.9663 -1.3132
41 1 10.3480 2.2018 0.2471
42 1 11.4032 3.3396 -3.3530
43 1 10.1512 3.2266 -4.6131
44 1 12.9457 4.9424 -6.2885
45 1 8.3427 2.7077 -0.2061
46 1 3.1547 -0.4514 1.7429
47 1 4.6213 -0.6590 0.7559
48 1 5.0717 -1.1771 3.1385
49 1 5.9968 0.2481 2.6089
50 1 4.5302 0.4559 3.5959
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001545057033.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:59:19
Heat of formation + Delta-G solvation = -51.532736 kcal
Electronic energy + Delta-G solvation = -30207.031484 eV
Core-core repulsion = 26043.720165 eV
Total energy + Delta-G solvation = -4163.311318 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-42.50690 -40.49496 -40.01800 -37.41750 -37.07515 -35.27862 -34.64834 -32.70951
-31.77625 -31.59530 -31.35381 -29.56642 -28.56912 -25.40944 -24.47202 -24.36858
-24.11567 -23.28581 -22.62424 -21.78034 -20.19548 -18.88668 -18.74086 -18.57033
-18.02048 -17.24263 -16.92926 -16.74316 -16.39020 -16.15794 -15.75372 -15.73277
-15.70417 -14.95470 -14.69246 -14.63092 -14.34016 -14.20507 -14.08273 -13.58246
-13.48081 -13.33716 -13.27216 -13.12442 -13.03735 -12.99162 -12.82670 -12.78679
-12.65307 -12.47808 -12.28872 -12.14648 -12.09235 -11.93378 -11.82443 -11.68458
-11.04266 -10.64114 -10.60940 -10.59514 -10.49363 -9.75313 -9.32480 -8.18306
-6.32427 0.53888 1.18219 1.24618 1.38026 1.40888 1.51614 2.32000
2.34516 2.50160 2.61210 2.70893 3.10420 3.45207 3.54259 3.77009
3.83572 3.89426 4.03380 4.05111 4.11622 4.16807 4.18959 4.24676
4.30984 4.39586 4.42064 4.49773 4.57475 4.61370 4.64595 4.79082
4.82828 4.95519 4.97222 5.01641 5.03565 5.10855 5.23073 5.25363
5.25979 5.39753 5.44712 5.62979 5.78712 5.91635 5.95417 6.08271
6.11694 6.55190 6.74956 6.86742 7.32426 7.55292 8.88294
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.020388 B = 0.002346 C = 0.002197
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1373.001165 B =11934.011489 C =12740.603935
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.038 3.962
3 O -0.400 6.400
4 C 0.240 3.760
5 C 0.143 3.857
6 N -0.356 5.356
7 C 0.130 3.870
8 C -0.304 4.304
9 C 0.575 3.425
10 O -0.603 6.603
11 N -0.598 5.598
12 C 0.085 3.915
13 C -0.172 4.172
14 C 0.266 3.734
15 C -0.539 4.539
16 H 0.050 0.950
17 C 0.007 3.993
18 N -0.928 5.928
19 Si 0.967 3.033
20 H -0.263 1.263
21 H -0.280 1.280
22 H -0.275 1.275
23 C 0.057 3.943
24 N -0.283 5.283
25 O -0.386 6.386
26 C 0.045 3.955
27 C -0.146 4.146
28 H 0.063 0.937
29 H 0.090 0.910
30 H 0.060 0.940
31 H 0.059 0.941
32 H 0.062 0.938
33 H 0.060 0.940
34 H 0.152 0.848
35 H 0.109 0.891
36 H 0.206 0.794
37 H 0.074 0.926
38 H 0.103 0.897
39 H 0.058 0.942
40 H 0.052 0.948
41 H 0.104 0.896
42 H 0.026 0.974
43 H -0.003 1.003
44 H 0.267 0.733
45 H 0.224 0.776
46 H 0.065 0.935
47 H 0.045 0.955
48 H 0.088 0.912
49 H 0.054 0.946
50 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.374 -11.634 17.832 30.169
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.037 4.037
3 O -0.321 6.321
4 C 0.143 3.857
5 C 0.023 3.977
6 N -0.136 5.136
7 C -0.021 4.021
8 C -0.319 4.319
9 C 0.365 3.635
10 O -0.486 6.486
11 N -0.327 5.327
12 C -0.037 4.037
13 C -0.230 4.230
14 C 0.145 3.855
15 C -0.577 4.577
16 H 0.068 0.932
17 C -0.192 4.192
18 N -0.568 5.568
19 Si 0.791 3.209
20 H -0.188 1.188
21 H -0.205 1.205
22 H -0.200 1.200
23 C -0.130 4.130
24 N -0.102 5.102
25 O -0.307 6.307
26 C -0.031 4.031
27 C -0.203 4.203
28 H 0.082 0.918
29 H 0.109 0.891
30 H 0.079 0.921
31 H 0.077 0.923
32 H 0.080 0.920
33 H 0.077 0.923
34 H 0.170 0.830
35 H 0.127 0.873
36 H 0.222 0.778
37 H 0.093 0.907
38 H 0.121 0.879
39 H 0.077 0.923
40 H 0.071 0.929
41 H 0.123 0.877
42 H 0.044 0.956
43 H 0.015 0.985
44 H 0.076 0.924
45 H 0.240 0.760
46 H 0.083 0.917
47 H 0.064 0.936
48 H 0.107 0.893
49 H 0.073 0.927
50 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -22.195 -11.614 18.393 31.077
hybrid contribution 1.046 0.611 -1.700 2.088
sum -21.148 -11.003 16.693 29.103
Atomic orbital electron populations
1.21772 0.92127 1.03603 1.03072 1.23075 0.97118 0.82324 1.01196
1.87949 1.21719 1.28974 1.93417 1.23251 0.79374 0.96952 0.86102
1.21735 0.74265 0.96561 1.05148 1.48386 1.06934 1.51371 1.06895
1.23188 0.92841 0.94816 0.91247 1.20273 0.93402 1.21924 0.96265
1.17829 0.82405 0.76139 0.87149 1.90687 1.81286 1.54729 1.21909
1.47991 1.06287 1.70229 1.08227 1.22210 1.02098 0.98840 0.80565
1.22299 1.01798 0.95625 1.03240 1.18709 0.85463 0.95570 0.85800
1.21693 1.20795 0.93216 1.22022 0.93213 1.25840 0.95356 1.02572
0.95431 1.70045 1.25121 1.35023 1.26612 0.85428 0.78441 0.79303
0.77700 1.18833 1.20530 1.19999 1.25444 0.98904 0.96935 0.91710
1.77404 0.94614 1.23117 1.15103 1.88161 1.77791 1.27531 1.37220
1.22899 1.00010 0.82578 0.97599 1.21716 0.99801 1.03018 0.95776
0.91795 0.89097 0.92089 0.92258 0.91974 0.92256 0.82998 0.87267
0.77769 0.90742 0.87947 0.92341 0.92910 0.87729 0.95555 0.98516
0.92446 0.75996 0.91731 0.93623 0.89289 0.92654 0.92158
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.32 10.28 71.98 0.74 -0.58 16
2 C 0.04 0.45 6.20 71.98 0.45 0.90 16
3 O -0.40 -6.65 10.23 -126.21 -1.29 -7.94 16
4 C 0.24 4.25 3.03 71.98 0.22 4.47 16
5 C 0.14 2.40 6.56 86.38 0.57 2.97 16
6 N -0.36 -8.44 3.65 -346.29 -1.26 -9.70 16
7 C 0.13 3.56 11.27 84.28 0.95 4.51 16
8 C -0.30 -10.36 5.87 -20.15 -0.12 -10.48 16
9 C 0.57 26.06 7.64 86.67 0.66 26.72 16
10 O -0.60 -32.85 16.57 -4.06 -0.07 -32.92 16
11 N -0.60 -26.93 2.46 -830.05 -2.04 -28.97 16
12 C 0.09 2.81 5.56 86.38 0.48 3.29 16
13 C -0.17 -4.47 8.57 71.98 0.62 -3.85 16
14 C 0.27 14.79 5.13 85.63 0.44 15.22 16
15 C -0.54 -32.03 9.39 25.60 0.24 -31.79 16
16 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16
17 C 0.01 0.40 5.46 84.65 0.46 0.86 16
18 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16
19 Si 0.97 45.99 29.54 68.60 2.03 48.02 16
20 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16
21 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16
22 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16
23 C 0.06 1.63 9.02 85.65 0.77 2.40 16
24 N -0.28 -7.75 11.47 -56.27 -0.65 -8.40 16
25 O -0.39 -8.18 9.26 -126.21 -1.17 -9.35 16
26 C 0.04 0.72 6.12 71.98 0.44 1.16 16
27 C -0.15 -2.12 10.28 71.98 0.74 -1.38 16
28 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16
29 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16
30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16
31 H 0.06 0.60 7.93 -2.39 -0.02 0.58 16
32 H 0.06 0.68 5.05 -2.39 -0.01 0.66 16
33 H 0.06 1.04 7.50 -2.39 -0.02 1.02 16
34 H 0.15 1.54 8.06 -2.38 -0.02 1.52 16
35 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16
36 H 0.21 4.67 8.06 -2.91 -0.02 4.64 16
37 H 0.07 2.54 8.11 -2.39 -0.02 2.52 16
38 H 0.10 2.93 4.59 -2.39 -0.01 2.92 16
39 H 0.06 1.55 7.05 -2.39 -0.02 1.53 16
40 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16
41 H 0.10 1.87 8.11 -2.38 -0.02 1.85 16
42 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16
43 H 0.00 -0.21 7.53 -2.38 -0.02 -0.23 16
44 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16
45 H 0.22 5.42 3.39 -2.91 -0.01 5.41 16
46 H 0.06 0.84 5.17 -2.39 -0.01 0.83 16
47 H 0.05 0.72 7.96 -2.39 -0.02 0.70 16
48 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16
49 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16
50 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16
Total: -1.00 -81.06 405.98 4.43 -76.63
By element:
Atomic # 1 Polarization: 13.96 SS G_CDS: 0.94 Total: 14.90 kcal
Atomic # 6 Polarization: 6.75 SS G_CDS: 7.66 Total: 14.41 kcal
Atomic # 7 Polarization: -100.09 SS G_CDS: -3.66 Total: -103.75 kcal
Atomic # 8 Polarization: -47.68 SS G_CDS: -2.53 Total: -50.21 kcal
Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal
Total: -81.06 4.43 -76.63 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001545057033.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.093 kcal
(2) G-P(sol) polarization free energy of solvation -81.055 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.962 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.626 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.533 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds