Wall clock time and date at job start Wed Apr 1 2020 00:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99802 * 2 1 4 4 H 1.09001 * 110.67307 * 357.03955 * 3 2 1 5 5 O 1.44379 * 110.61590 * 234.07015 * 3 2 1 6 6 C 1.43750 * 106.97450 * 201.43694 * 5 3 2 7 7 C 1.54096 * 107.28934 * 26.51638 * 6 5 3 8 8 C 1.54802 * 104.19219 * 357.97018 * 7 6 5 9 9 H 1.09000 * 110.91262 * 97.35362 * 8 7 6 10 10 C 1.50709 * 110.91035 * 220.92087 * 8 7 6 11 11 O 1.21275 * 120.00134 * 118.54273 * 10 8 7 12 12 N 1.34780 * 119.99585 * 298.54547 * 10 8 7 13 13 C 1.46496 * 119.99680 * 179.97438 * 12 10 8 14 14 C 1.52994 * 109.47320 * 180.02562 * 13 12 10 15 15 N 1.46897 * 109.47308 * 184.88285 * 14 13 12 16 16 C 1.46905 * 111.00136 * 160.34177 * 15 14 13 17 17 C 1.53007 * 109.46954 * 287.66994 * 16 15 14 18 18 C 1.46905 * 110.99924 * 284.29342 * 15 14 13 19 19 C 1.50699 * 109.46648 * 170.00113 * 18 15 14 20 20 O 1.21290 * 120.00432 * 0.02562 * 19 18 15 21 21 N 1.34778 * 119.99645 * 180.02562 * 19 18 15 22 22 C 1.37106 * 120.00120 * 180.02562 * 21 19 18 23 23 H 1.07991 * 119.99785 * 359.97438 * 22 21 19 24 24 C 1.38943 * 119.99729 * 179.97438 * 22 21 19 25 25 N 1.31414 * 120.00325 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99572 * 180.27616 * 24 22 21 27 27 H 1.48502 * 109.46597 * 269.72419 * 26 24 22 28 28 H 1.48497 * 109.47041 * 29.72226 * 26 24 22 29 29 H 1.48501 * 109.46856 * 149.72700 * 26 24 22 30 30 H 1.08000 * 120.00492 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.99911 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.00492 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.87889 * 267.09227 * 6 5 3 34 34 H 1.08999 * 110.00293 * 146.01270 * 6 5 3 35 35 H 1.09005 * 110.48970 * 239.29197 * 7 6 5 36 36 H 1.09007 * 110.48581 * 116.64947 * 7 6 5 37 37 H 0.96999 * 119.99795 * 359.97438 * 12 10 8 38 38 H 1.09005 * 109.47105 * 59.99736 * 13 12 10 39 39 H 1.08999 * 109.47279 * 300.00216 * 13 12 10 40 40 H 1.09005 * 109.47081 * 64.87952 * 14 13 12 41 41 H 1.09001 * 109.47185 * 304.88167 * 14 13 12 42 42 H 1.09002 * 109.46739 * 47.66186 * 16 15 14 43 43 H 1.08992 * 109.47531 * 167.66564 * 16 15 14 44 44 H 1.08994 * 109.46760 * 178.93840 * 17 16 15 45 45 H 1.08999 * 109.46639 * 298.93721 * 17 16 15 46 46 H 1.08997 * 109.47144 * 58.93279 * 17 16 15 47 47 H 1.08988 * 109.46754 * 50.00112 * 18 15 14 48 48 H 1.08997 * 109.47018 * 289.99759 * 18 15 14 49 49 H 0.97006 * 120.00321 * 359.97438 * 21 19 18 50 50 H 0.97001 * 119.99977 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3738 2.1476 -0.0527 5 8 3.0043 1.3490 -1.0942 6 6 4.0001 2.3278 -0.7526 7 6 4.0580 2.4046 0.7854 8 6 2.9646 1.4152 1.2563 9 1 3.3984 0.4480 1.5104 10 6 2.1947 1.9794 2.4226 11 8 1.0024 2.1777 2.3232 12 7 2.8314 2.2637 3.5760 13 6 2.0832 2.8127 4.7095 14 6 3.0348 3.0437 5.8850 15 7 2.2670 3.4833 7.0576 16 6 3.0291 3.2715 8.2956 17 6 3.0853 1.7751 8.6101 18 6 1.8600 4.8885 6.9239 19 6 0.8773 5.2326 8.0133 20 8 0.5486 4.3903 8.8219 21 7 0.3635 6.4763 8.0892 22 6 -0.5302 6.7896 9.0806 23 1 -0.8228 6.0397 9.8005 24 6 -1.0593 8.0719 9.1590 25 7 -0.7028 8.9846 8.2833 26 14 -2.2711 8.5009 10.5145 27 1 -3.6542 8.2333 10.0447 28 1 -1.9864 7.6722 11.7134 29 1 -2.1359 9.9382 10.8626 30 1 -0.5401 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8501 -0.9353 -0.0004 33 1 3.7212 3.2988 -1.1619 34 1 4.9707 2.0251 -1.1454 35 1 3.8306 3.4149 1.1258 36 1 5.0376 2.0909 1.1464 37 1 3.7850 2.1048 3.6555 38 1 1.3039 2.1102 5.0050 39 1 1.6277 3.7597 4.4198 40 1 3.7620 3.8108 5.6184 41 1 3.5555 2.1151 6.1189 42 1 4.0417 3.6543 8.1688 43 1 2.5419 3.7973 9.1166 44 1 3.6666 1.6165 9.5183 45 1 2.0736 1.3962 8.7554 46 1 3.5554 1.2469 7.7807 47 1 1.3921 5.0402 5.9513 48 1 2.7368 5.5304 7.0095 49 1 0.6266 7.1500 7.4427 50 1 -1.0720 9.8799 8.3383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567345506.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:11 Heat of formation + Delta-G solvation = -89.821477 kcal Electronic energy + Delta-G solvation = -29446.874026 eV Core-core repulsion = 25281.902383 eV Total energy + Delta-G solvation = -4164.971643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.75917 -39.06896 -38.59770 -36.91614 -34.90758 -34.06556 -33.83175 -32.78599 -31.36198 -30.80957 -29.39980 -28.69105 -26.30749 -24.43583 -23.84140 -22.76341 -22.30585 -21.08175 -20.38974 -20.18404 -19.18065 -17.89215 -17.78705 -16.68312 -16.50162 -16.14010 -15.98924 -15.62750 -15.35803 -14.95235 -14.69467 -14.41625 -14.13518 -14.00748 -13.89812 -13.79729 -13.70335 -13.60490 -13.20715 -12.76849 -12.47731 -12.21997 -12.18400 -11.87497 -11.76718 -11.59411 -11.48888 -11.47014 -11.40936 -11.23117 -11.12369 -10.82516 -10.54816 -10.39062 -10.21662 -10.17145 -10.00029 -9.64650 -9.46432 -9.22129 -8.45080 -8.00170 -7.91924 -6.41415 -3.82175 1.93763 2.39456 2.80637 3.18240 3.26874 3.32431 3.61231 3.89312 3.97138 4.07431 4.18671 4.24445 4.36992 4.63128 4.72676 4.76483 4.84444 4.95270 4.96809 5.02250 5.10592 5.24658 5.29269 5.31000 5.31276 5.40778 5.45224 5.54202 5.55031 5.68121 5.74243 5.78972 5.83963 5.87366 5.94289 6.07919 6.21881 6.27675 6.34576 6.40499 6.44902 6.50548 6.58191 7.21841 7.23542 7.33973 7.55617 7.99365 8.06492 8.61746 9.18376 9.54553 10.06062 10.76371 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013391 B = 0.002110 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.413953 B =13269.367675 C =14169.469169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.161 4.161 3 C 0.127 3.873 4 H 0.088 0.912 5 O -0.369 6.369 6 C 0.047 3.953 7 C -0.148 4.148 8 C -0.138 4.138 9 H 0.114 0.886 10 C 0.523 3.477 11 O -0.527 6.527 12 N -0.727 5.727 13 C 0.121 3.879 14 C 0.043 3.957 15 N -0.511 5.511 16 C 0.051 3.949 17 C -0.140 4.140 18 C 0.043 3.957 19 C 0.443 3.557 20 O -0.576 6.576 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.270 1.270 29 H -0.284 1.284 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.398 0.602 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.038 0.962 41 H 0.080 0.920 42 H 0.021 0.979 43 H 0.100 0.900 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.044 0.956 47 H 0.089 0.911 48 H 0.048 0.952 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.025 -13.855 -15.873 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.179 4.179 3 C 0.070 3.930 4 H 0.105 0.895 5 O -0.288 6.288 6 C -0.029 4.029 7 C -0.186 4.186 8 C -0.160 4.160 9 H 0.132 0.868 10 C 0.308 3.692 11 O -0.402 6.402 12 N -0.379 5.379 13 C -0.003 4.003 14 C -0.086 4.086 15 N -0.236 5.236 16 C -0.076 4.076 17 C -0.198 4.198 18 C -0.089 4.089 19 C 0.229 3.771 20 O -0.460 6.460 21 N -0.201 5.201 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.194 1.194 29 H -0.210 1.210 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.232 0.768 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.098 0.902 42 H 0.040 0.960 43 H 0.119 0.881 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.063 0.937 47 H 0.107 0.893 48 H 0.066 0.934 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.428 -14.464 -15.543 24.602 hybrid contribution 0.865 1.342 0.448 1.658 sum 13.293 -13.122 -15.096 24.016 Atomic orbital electron populations 1.23944 0.95742 1.02473 0.96665 1.22521 0.95739 0.96672 1.02945 1.21993 0.90418 0.97365 0.83269 0.89466 1.88938 1.38487 1.60255 1.41166 1.23134 0.92986 0.93069 0.93754 1.22978 0.98992 1.00066 0.96595 1.22902 0.97035 1.01163 0.94891 0.86845 1.20115 0.87785 0.77982 0.83281 1.90753 1.14847 1.52095 1.82549 1.45932 1.12450 1.66124 1.13394 1.21375 0.94787 0.99930 0.84209 1.22258 0.94624 1.00719 0.90961 1.61438 1.41426 1.19586 1.01155 1.22197 0.94553 0.97709 0.93142 1.21717 1.02459 0.95656 0.99932 1.21939 0.98298 0.88473 1.00154 1.19691 0.85969 0.83540 0.87923 1.90503 1.63599 1.48178 1.43704 1.41877 1.39646 1.09791 1.28780 1.19691 1.18970 0.96575 1.07512 0.87897 1.25259 0.98766 0.95485 0.98446 1.69613 1.44475 1.04285 1.35981 0.85865 0.80219 0.77505 0.80746 1.20375 1.19431 1.20959 0.87899 0.87879 0.86887 0.91933 0.89378 0.89866 0.89381 0.76839 0.90099 0.91201 0.94373 0.90151 0.96030 0.88150 0.92821 0.91511 0.93737 0.89323 0.93404 0.77527 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 14.33 29.02 0.42 -1.03 16 2 C -0.16 -1.55 9.24 -36.02 -0.33 -1.88 16 3 C 0.13 1.26 2.73 -26.83 -0.07 1.19 16 4 H 0.09 1.00 7.25 -51.93 -0.38 0.63 16 5 O -0.37 -3.69 11.21 -35.23 -0.39 -4.08 16 6 C 0.05 0.32 7.70 37.73 0.29 0.61 16 7 C -0.15 -0.87 6.55 -25.21 -0.17 -1.04 16 8 C -0.14 -1.11 2.94 -89.76 -0.26 -1.38 16 9 H 0.11 0.74 8.05 -51.93 -0.42 0.32 16 10 C 0.52 5.71 7.05 -10.98 -0.08 5.64 16 11 O -0.53 -8.02 15.80 5.56 0.09 -7.93 16 12 N -0.73 -6.66 5.50 -60.30 -0.33 -6.99 16 13 C 0.12 1.45 5.71 -4.05 -0.02 1.42 16 14 C 0.04 0.49 4.94 -3.83 -0.02 0.47 16 15 N -0.51 -8.03 4.13 -236.07 -0.97 -9.00 16 16 C 0.05 0.79 5.23 -3.82 -0.02 0.77 16 17 C -0.14 -1.83 10.00 37.16 0.37 -1.46 16 18 C 0.04 0.74 5.28 -4.97 -0.03 0.72 16 19 C 0.44 10.32 7.34 -10.99 -0.08 10.24 16 20 O -0.58 -15.23 14.06 5.55 0.08 -15.15 16 21 N -0.56 -14.24 5.29 -10.97 -0.06 -14.29 16 22 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 23 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 26 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 29 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 30 H 0.10 1.06 7.87 -52.49 -0.41 0.64 16 31 H 0.10 0.80 8.06 -52.48 -0.42 0.37 16 32 H 0.11 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.52 7.85 -51.93 -0.41 0.11 16 36 H 0.09 0.32 8.14 -51.92 -0.42 -0.11 16 37 H 0.40 2.36 8.47 -40.82 -0.35 2.02 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 0.95 6.94 -51.93 -0.36 0.59 16 40 H 0.04 0.39 8.00 -51.93 -0.42 -0.03 16 41 H 0.08 0.79 6.26 -51.93 -0.32 0.46 16 42 H 0.02 0.29 8.05 -51.93 -0.42 -0.13 16 43 H 0.10 1.92 5.81 -51.93 -0.30 1.62 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.04 0.49 6.53 -51.93 -0.34 0.15 16 47 H 0.09 1.44 6.71 -51.94 -0.35 1.09 16 48 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 49 H 0.39 9.49 7.90 -40.82 -0.32 9.16 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 408.35 15.07 6.15 6.15 Total: -1.00 -33.57 408.35 -8.09 -41.66 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -8.11 Total: 11.09 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -0.24 Total: 6.34 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.64 Total: -54.17 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.23 Total: -27.16 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.57 -8.09 -41.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567345506.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.163 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds