Wall clock time and date at job start Wed Apr 1 2020 00:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99802 * 2 1 4 4 H 1.09001 * 110.67307 * 357.03955 * 3 2 1 5 5 O 1.44379 * 110.61590 * 234.07015 * 3 2 1 6 6 C 1.43750 * 106.97450 * 201.43694 * 5 3 2 7 7 C 1.54096 * 107.28934 * 26.51638 * 6 5 3 8 8 C 1.54802 * 104.19219 * 357.97018 * 7 6 5 9 9 H 1.09000 * 110.91262 * 97.35362 * 8 7 6 10 10 C 1.50709 * 110.91035 * 220.92087 * 8 7 6 11 11 O 1.21275 * 120.00134 * 118.54273 * 10 8 7 12 12 N 1.34780 * 119.99585 * 298.54547 * 10 8 7 13 13 C 1.46496 * 119.99680 * 179.97438 * 12 10 8 14 14 C 1.52994 * 109.47320 * 180.02562 * 13 12 10 15 15 N 1.46897 * 109.47308 * 184.88285 * 14 13 12 16 16 C 1.46905 * 111.00136 * 160.34177 * 15 14 13 17 17 C 1.53007 * 109.46954 * 287.66994 * 16 15 14 18 18 C 1.46905 * 110.99924 * 284.29342 * 15 14 13 19 19 C 1.50699 * 109.46648 * 170.00113 * 18 15 14 20 20 O 1.21290 * 120.00432 * 0.02562 * 19 18 15 21 21 N 1.34778 * 119.99645 * 180.02562 * 19 18 15 22 22 C 1.37106 * 120.00120 * 180.02562 * 21 19 18 23 23 H 1.07991 * 119.99785 * 359.97438 * 22 21 19 24 24 C 1.38943 * 119.99729 * 179.97438 * 22 21 19 25 25 N 1.31414 * 120.00325 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99572 * 180.27616 * 24 22 21 27 27 H 1.48502 * 109.46597 * 269.72419 * 26 24 22 28 28 H 1.48497 * 109.47041 * 29.72226 * 26 24 22 29 29 H 1.48501 * 109.46856 * 149.72700 * 26 24 22 30 30 H 1.08000 * 120.00492 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.99911 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.00492 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.87889 * 267.09227 * 6 5 3 34 34 H 1.08999 * 110.00293 * 146.01270 * 6 5 3 35 35 H 1.09005 * 110.48970 * 239.29197 * 7 6 5 36 36 H 1.09007 * 110.48581 * 116.64947 * 7 6 5 37 37 H 0.96999 * 119.99795 * 359.97438 * 12 10 8 38 38 H 1.09005 * 109.47105 * 59.99736 * 13 12 10 39 39 H 1.08999 * 109.47279 * 300.00216 * 13 12 10 40 40 H 1.09005 * 109.47081 * 64.87952 * 14 13 12 41 41 H 1.09001 * 109.47185 * 304.88167 * 14 13 12 42 42 H 1.09002 * 109.46739 * 47.66186 * 16 15 14 43 43 H 1.08992 * 109.47531 * 167.66564 * 16 15 14 44 44 H 1.08994 * 109.46760 * 178.93840 * 17 16 15 45 45 H 1.08999 * 109.46639 * 298.93721 * 17 16 15 46 46 H 1.08997 * 109.47144 * 58.93279 * 17 16 15 47 47 H 1.08988 * 109.46754 * 50.00112 * 18 15 14 48 48 H 1.08997 * 109.47018 * 289.99759 * 18 15 14 49 49 H 0.97006 * 120.00321 * 359.97438 * 21 19 18 50 50 H 0.97001 * 119.99977 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3738 2.1476 -0.0527 5 8 3.0043 1.3490 -1.0942 6 6 4.0001 2.3278 -0.7526 7 6 4.0580 2.4046 0.7854 8 6 2.9646 1.4152 1.2563 9 1 3.3984 0.4480 1.5104 10 6 2.1947 1.9794 2.4226 11 8 1.0024 2.1777 2.3232 12 7 2.8314 2.2637 3.5760 13 6 2.0832 2.8127 4.7095 14 6 3.0348 3.0437 5.8850 15 7 2.2670 3.4833 7.0576 16 6 3.0291 3.2715 8.2956 17 6 3.0853 1.7751 8.6101 18 6 1.8600 4.8885 6.9239 19 6 0.8773 5.2326 8.0133 20 8 0.5486 4.3903 8.8219 21 7 0.3635 6.4763 8.0892 22 6 -0.5302 6.7896 9.0806 23 1 -0.8228 6.0397 9.8005 24 6 -1.0593 8.0719 9.1590 25 7 -0.7028 8.9846 8.2833 26 14 -2.2711 8.5009 10.5145 27 1 -3.6542 8.2333 10.0447 28 1 -1.9864 7.6722 11.7134 29 1 -2.1359 9.9382 10.8626 30 1 -0.5401 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8501 -0.9353 -0.0004 33 1 3.7212 3.2988 -1.1619 34 1 4.9707 2.0251 -1.1454 35 1 3.8306 3.4149 1.1258 36 1 5.0376 2.0909 1.1464 37 1 3.7850 2.1048 3.6555 38 1 1.3039 2.1102 5.0050 39 1 1.6277 3.7597 4.4198 40 1 3.7620 3.8108 5.6184 41 1 3.5555 2.1151 6.1189 42 1 4.0417 3.6543 8.1688 43 1 2.5419 3.7973 9.1166 44 1 3.6666 1.6165 9.5183 45 1 2.0736 1.3962 8.7554 46 1 3.5554 1.2469 7.7807 47 1 1.3921 5.0402 5.9513 48 1 2.7368 5.5304 7.0095 49 1 0.6266 7.1500 7.4427 50 1 -1.0720 9.8799 8.3383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567345506.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:10 Heat of formation + Delta-G solvation = -116.087077 kcal Electronic energy + Delta-G solvation = -29448.012988 eV Core-core repulsion = 25281.902383 eV Total energy + Delta-G solvation = -4166.110604 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.53125 -40.49390 -39.62404 -38.32872 -36.06161 -35.67327 -34.78648 -33.47476 -33.30599 -32.00560 -30.45920 -29.44308 -27.78626 -26.06342 -24.82051 -23.51047 -23.08245 -22.24485 -21.25714 -21.02539 -20.83416 -19.86880 -18.58254 -17.92698 -17.40054 -17.16365 -16.87176 -16.82618 -16.42462 -16.29929 -16.00036 -15.79503 -15.52629 -15.39956 -14.82471 -14.76625 -14.61258 -14.53432 -14.24164 -14.02801 -13.67241 -13.51191 -13.43069 -13.00716 -12.89445 -12.84311 -12.62380 -12.55398 -12.42853 -12.41797 -12.14789 -12.05840 -11.98748 -11.87124 -11.74863 -11.40791 -10.98767 -10.73334 -10.38575 -10.25892 -10.13135 -9.99532 -9.22533 -8.46759 -5.95141 1.20737 1.37032 1.40471 1.53128 1.55549 1.95125 2.05969 2.28811 2.82344 3.01047 3.20347 3.37237 3.46152 3.52644 3.77250 3.88802 4.02471 4.06381 4.11776 4.18025 4.24312 4.27310 4.29647 4.39143 4.41756 4.46602 4.56473 4.59126 4.73476 4.73640 4.80860 4.83362 4.87748 4.92146 4.98381 5.05409 5.07517 5.23484 5.36901 5.40818 5.41853 5.59595 5.73937 5.89671 5.89843 6.08848 6.21998 6.51118 6.60690 7.13248 7.21304 7.56933 8.12772 8.70839 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013391 B = 0.002110 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.413953 B =13269.367675 C =14169.469169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.165 4.165 3 C 0.122 3.878 4 H 0.060 0.940 5 O -0.386 6.386 6 C 0.038 3.962 7 C -0.140 4.140 8 C -0.129 4.129 9 H 0.138 0.862 10 C 0.521 3.479 11 O -0.578 6.578 12 N -0.708 5.708 13 C 0.129 3.871 14 C 0.052 3.948 15 N -0.534 5.534 16 C 0.052 3.948 17 C -0.133 4.133 18 C 0.056 3.944 19 C 0.441 3.559 20 O -0.611 6.611 21 N -0.577 5.577 22 C -0.330 4.330 23 H 0.079 0.921 24 C -0.014 4.014 25 N -0.922 5.922 26 Si 0.992 3.008 27 H -0.273 1.273 28 H -0.272 1.272 29 H -0.270 1.270 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.123 0.877 37 H 0.419 0.581 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.105 0.895 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.038 0.962 46 H 0.072 0.928 47 H 0.101 0.899 48 H 0.072 0.928 49 H 0.395 0.605 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.885 -14.608 -16.488 27.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.183 4.183 3 C 0.064 3.936 4 H 0.078 0.922 5 O -0.306 6.306 6 C -0.038 4.038 7 C -0.177 4.177 8 C -0.150 4.150 9 H 0.156 0.844 10 C 0.307 3.693 11 O -0.457 6.457 12 N -0.361 5.361 13 C 0.004 3.996 14 C -0.075 4.075 15 N -0.260 5.260 16 C -0.075 4.075 17 C -0.190 4.190 18 C -0.075 4.075 19 C 0.228 3.772 20 O -0.497 6.497 21 N -0.214 5.214 22 C -0.460 4.460 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.563 5.563 26 Si 0.815 3.185 27 H -0.198 1.198 28 H -0.197 1.197 29 H -0.195 1.195 30 H 0.104 0.896 31 H 0.138 0.862 32 H 0.149 0.851 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.097 0.903 36 H 0.142 0.858 37 H 0.256 0.744 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.124 0.876 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.057 0.943 46 H 0.091 0.909 47 H 0.119 0.881 48 H 0.090 0.910 49 H 0.229 0.771 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.354 -15.220 -16.176 27.000 hybrid contribution 0.009 1.532 0.589 1.642 sum 15.362 -13.687 -15.587 25.812 Atomic orbital electron populations 1.24043 0.96129 1.02552 0.97312 1.22749 0.95840 0.97320 1.02398 1.21917 0.90621 0.96553 0.84523 0.92219 1.88919 1.39060 1.61109 1.41517 1.23379 0.93213 0.92519 0.94672 1.23013 0.99757 0.99281 0.95688 1.22868 0.96819 1.02748 0.92556 0.84396 1.20665 0.87327 0.77143 0.84127 1.90743 1.17269 1.54244 1.83417 1.45692 1.13279 1.65073 1.12055 1.21102 0.94809 0.98311 0.85389 1.22266 0.94152 1.02484 0.88636 1.61347 1.43413 1.18283 1.02948 1.22115 0.95085 0.98733 0.91564 1.21662 1.01336 0.94186 1.01848 1.21769 0.97498 0.90363 0.97843 1.20779 0.85702 0.82314 0.88377 1.90479 1.64792 1.49034 1.45416 1.41960 1.40006 1.10756 1.28702 1.19642 1.20919 0.96858 1.08549 0.90324 1.26028 0.99992 0.94901 1.00470 1.69674 1.45094 1.04611 1.36951 0.84948 0.77990 0.77675 0.77859 1.19849 1.19667 1.19473 0.89599 0.86161 0.85074 0.92212 0.87035 0.90269 0.85846 0.74365 0.92919 0.93175 0.91774 0.87639 0.93360 0.92742 0.91324 0.94316 0.90883 0.88125 0.91016 0.77149 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 14.33 67.78 0.97 -2.24 16 2 C -0.17 -3.11 9.24 25.65 0.24 -2.87 16 3 C 0.12 2.37 2.73 30.53 0.08 2.45 16 4 H 0.06 1.47 7.25 -2.39 -0.02 1.45 16 5 O -0.39 -7.26 11.21 -148.98 -1.67 -8.93 16 6 C 0.04 0.44 7.70 72.35 0.56 1.00 16 7 C -0.14 -1.20 6.55 31.58 0.21 -0.99 16 8 C -0.13 -1.79 2.94 -10.24 -0.03 -1.82 16 9 H 0.14 1.29 8.05 -2.39 -0.02 1.27 16 10 C 0.52 10.78 7.05 87.66 0.62 11.40 16 11 O -0.58 -18.07 15.80 -3.01 -0.05 -18.11 16 12 N -0.71 -11.24 5.50 -463.06 -2.55 -13.79 16 13 C 0.13 2.91 5.71 86.38 0.49 3.41 16 14 C 0.05 1.02 4.94 86.30 0.43 1.45 16 15 N -0.53 -16.05 4.13 -900.80 -3.72 -19.76 16 16 C 0.05 1.53 5.23 86.30 0.45 1.98 16 17 C -0.13 -3.23 10.00 71.98 0.72 -2.51 16 18 C 0.06 1.92 5.28 85.56 0.45 2.37 16 19 C 0.44 21.05 7.34 87.66 0.64 21.69 16 20 O -0.61 -33.66 14.06 -3.06 -0.04 -33.70 16 21 N -0.58 -29.94 5.29 -306.99 -1.62 -31.57 16 22 C -0.33 -18.96 9.68 84.04 0.81 -18.14 16 23 H 0.08 4.81 7.16 -2.92 -0.02 4.79 16 24 C -0.01 -0.78 5.50 84.92 0.47 -0.32 16 25 N -0.92 -50.47 13.05 21.66 0.28 -50.19 16 26 Si 0.99 43.58 29.55 68.60 2.03 45.61 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 28 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 29 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 30 H 0.09 1.94 7.87 -2.91 -0.02 1.92 16 31 H 0.12 1.84 8.06 -2.91 -0.02 1.82 16 32 H 0.13 1.94 8.06 -2.91 -0.02 1.91 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 0.78 7.85 -2.38 -0.02 0.76 16 36 H 0.12 0.24 8.14 -2.38 -0.02 0.22 16 37 H 0.42 3.19 8.47 -92.71 -0.79 2.40 16 38 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.05 1.34 6.94 -2.39 -0.02 1.33 16 40 H 0.06 0.99 8.00 -2.38 -0.02 0.97 16 41 H 0.11 1.57 6.26 -2.39 -0.01 1.56 16 42 H 0.05 1.15 8.05 -2.39 -0.02 1.13 16 43 H 0.05 2.11 5.81 -2.39 -0.01 2.10 16 44 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.07 1.34 6.53 -2.39 -0.02 1.33 16 47 H 0.10 3.20 6.71 -2.39 -0.02 3.19 16 48 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 49 H 0.39 19.55 7.90 -92.70 -0.73 18.82 16 50 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -77.63 408.35 -0.79 -78.42 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: -0.56 Total: 35.18 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 7.11 Total: 16.85 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -7.61 Total: -115.31 kcal Atomic # 8 Polarization: -58.99 SS G_CDS: -1.76 Total: -60.75 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -77.63 -0.79 -78.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567345506.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.664 kcal (2) G-P(sol) polarization free energy of solvation -77.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds